Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09002 * 109.47097 * 55.00131 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 3 2 1 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09002 * 109.47153 * 60.00231 * 9 8 7 11 11 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 12 12 N 1.46501 * 109.46932 * 295.00126 * 11 9 8 13 13 C 1.34781 * 119.99929 * 180.02562 * 12 11 9 14 14 O 1.21273 * 119.99811 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00036 * 180.02562 * 13 12 11 16 16 C 1.52993 * 109.47267 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47384 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99724 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99851 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99441 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46858 * 60.00269 * 21 19 17 23 23 H 1.48503 * 109.46745 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.46975 * 300.00093 * 21 19 17 25 25 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47396 * 299.99642 * 1 2 3 27 27 H 1.08998 * 109.47230 * 59.99893 * 1 2 3 28 28 H 1.09000 * 109.47396 * 240.00358 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00107 * 2 1 3 30 30 H 1.08996 * 109.46929 * 59.99225 * 5 3 2 31 31 H 1.09002 * 109.46716 * 300.00030 * 5 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 38 38 H 1.08997 * 109.47011 * 55.00129 * 11 9 8 39 39 H 1.08999 * 109.47369 * 175.00236 * 11 9 8 40 40 H 0.96998 * 120.00102 * 359.97438 * 12 11 9 41 41 H 1.08996 * 109.46933 * 300.00027 * 15 13 12 42 42 H 1.09008 * 109.47224 * 59.99562 * 15 13 12 43 43 H 1.08996 * 109.47701 * 300.00212 * 16 15 13 44 44 H 1.08999 * 109.46977 * 60.00202 * 16 15 13 45 45 H 0.97002 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.1457 3.5690 -1.3075 7 6 3.6705 3.5702 -1.1821 8 6 4.0754 2.8862 0.1253 9 6 3.5648 1.4439 0.1255 10 1 3.9991 0.9046 -0.7164 11 6 3.9691 0.7600 1.4330 12 7 5.4288 0.6544 1.4979 13 6 6.0162 0.0817 2.5673 14 8 5.3364 -0.3458 3.4760 15 6 7.5178 -0.0263 2.6343 16 6 7.9221 -0.7103 3.9417 17 6 9.4237 -0.8189 4.0085 18 1 10.0292 -0.4378 3.1994 19 6 10.0246 -1.4049 5.1024 20 7 9.2873 -1.8695 6.0874 21 14 11.8860 -1.5388 5.1854 22 1 12.4828 -0.1801 5.1332 23 1 12.2783 -2.2040 6.4539 24 1 12.3763 -2.3394 4.0350 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 -1.3968 31 1 2.0698 1.5877 -2.1491 32 1 1.7114 4.1083 -0.4656 33 1 1.8576 4.0562 -2.2390 34 1 4.1048 3.0310 -2.0239 35 1 4.0342 4.5978 -1.1818 36 1 5.1616 2.8874 0.2149 37 1 3.6410 3.4254 0.9671 38 1 3.6095 1.3484 2.2771 39 1 3.5306 -0.2372 1.4722 40 1 5.9726 0.9960 0.7709 41 1 7.8778 -0.6140 1.7899 42 1 7.9560 0.9711 2.5958 43 1 7.5621 -0.1223 4.7860 44 1 7.4840 -1.7076 3.9806 45 1 9.7100 -2.2820 6.8568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452419340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = -92.256190 kcal Electronic energy + Delta-G solvation = -20521.842979 eV Core-core repulsion = 17536.971865 eV Total energy + Delta-G solvation = -2984.871114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89910 -38.64665 -34.63298 -34.20301 -33.40442 -31.46843 -30.60204 -29.31467 -26.44411 -24.86225 -24.18388 -21.89602 -21.03333 -20.87309 -20.15381 -19.38219 -16.86197 -15.87056 -15.70626 -15.28464 -15.16564 -14.98170 -14.42275 -14.30894 -14.08729 -13.79555 -13.49473 -13.01913 -12.88277 -12.65880 -12.14301 -12.07625 -11.91477 -11.76096 -11.59955 -11.30861 -11.16029 -11.12521 -10.97167 -10.88569 -10.63503 -10.59984 -10.17778 -10.07647 -9.91346 -9.62509 -9.14166 -8.95564 -8.66324 -8.28993 -5.93298 -3.97711 3.33599 3.36160 3.40485 3.42210 3.64306 4.35832 4.40302 4.48441 4.51028 4.79839 4.85379 5.01057 5.08057 5.12925 5.20675 5.23142 5.30295 5.41361 5.43002 5.49057 5.54714 5.63262 5.67925 5.73525 5.80383 5.82141 5.88572 5.93053 6.01651 6.03081 6.06056 6.08450 6.23383 6.27523 6.29451 6.32887 6.82692 6.94343 7.77170 7.90339 7.97197 8.10726 8.42112 8.86092 9.11091 9.65555 11.17655 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.003143 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.294179 B = 8907.946409 C = 9516.936489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.078 4.078 4 H 0.072 0.928 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.093 4.093 10 H 0.076 0.924 11 C 0.120 3.880 12 N -0.743 5.743 13 C 0.508 3.492 14 O -0.537 6.537 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.395 0.605 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 9.960 -17.786 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.112 4.112 10 H 0.094 0.906 11 C -0.003 4.003 12 N -0.398 5.398 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.229 0.771 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.483 9.545 -16.918 25.476 hybrid contribution 1.270 0.081 -0.266 1.300 sum -15.213 9.626 -17.184 24.887 Atomic orbital electron populations 1.21810 0.95973 1.01522 1.01684 1.21701 0.95859 0.96358 1.02561 1.21129 0.94138 0.96141 0.98302 0.90920 1.21617 1.00574 0.95541 0.97350 1.21547 0.95897 0.96830 1.01519 1.21534 0.95840 1.00428 0.97861 1.21607 1.00888 0.95021 0.97819 1.21415 0.95868 0.96283 0.97585 0.90610 1.21397 0.81443 1.00618 0.96882 1.46226 1.06936 1.63551 1.23057 1.21535 0.92095 0.75965 0.80776 1.90661 1.66094 1.47039 1.37409 1.21856 0.88446 1.02714 1.04019 1.18886 0.95384 0.96114 0.89649 1.21200 0.91876 1.39140 1.04364 0.92680 1.25027 0.98101 0.95532 0.95733 1.69987 1.35145 1.39459 1.08282 0.86653 0.85795 0.78217 0.77260 1.20259 1.21292 1.20263 0.92896 0.92773 0.92724 0.91996 0.91163 0.91769 0.92045 0.92058 0.92285 0.92041 0.92108 0.91668 0.91741 0.92050 0.91519 0.77086 0.90352 0.90354 0.95855 0.95857 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.13 -1.08 5.19 -26.73 -0.14 -1.22 16 3 C -0.08 -0.64 1.72 -90.62 -0.16 -0.80 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.11 -0.80 4.96 -26.73 -0.13 -0.93 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 8 C -0.12 -1.00 5.08 -26.73 -0.14 -1.13 16 9 C -0.09 -0.85 1.75 -90.62 -0.16 -1.01 16 10 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 11 C 0.12 1.52 4.85 -4.04 -0.02 1.50 16 12 N -0.74 -10.63 5.28 -60.30 -0.32 -10.95 16 13 C 0.51 10.03 7.83 -10.99 -0.09 9.95 16 14 O -0.54 -13.03 15.98 5.56 0.09 -12.94 16 15 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.37 6.56 -51.93 -0.34 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 6.07 -51.93 -0.32 0.38 16 30 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.91 6.07 -51.93 -0.32 0.60 16 40 H 0.40 4.50 7.66 -40.82 -0.31 4.18 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -33.47 349.12 -9.02 -42.49 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.30 Total: -1.35 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.47 Total: -12.32 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.42 Total: -38.00 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.47 -9.02 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452419340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.765 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds