Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09002 * 109.47097 * 55.00131 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 3 2 1 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09002 * 109.47153 * 60.00231 * 9 8 7 11 11 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 12 12 N 1.46501 * 109.46932 * 295.00126 * 11 9 8 13 13 C 1.34781 * 119.99929 * 180.02562 * 12 11 9 14 14 O 1.21273 * 119.99811 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00036 * 180.02562 * 13 12 11 16 16 C 1.52993 * 109.47267 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47384 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99724 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99851 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99441 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46858 * 60.00269 * 21 19 17 23 23 H 1.48503 * 109.46745 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.46975 * 300.00093 * 21 19 17 25 25 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47396 * 299.99642 * 1 2 3 27 27 H 1.08998 * 109.47230 * 59.99893 * 1 2 3 28 28 H 1.09000 * 109.47396 * 240.00358 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00107 * 2 1 3 30 30 H 1.08996 * 109.46929 * 59.99225 * 5 3 2 31 31 H 1.09002 * 109.46716 * 300.00030 * 5 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 38 38 H 1.08997 * 109.47011 * 55.00129 * 11 9 8 39 39 H 1.08999 * 109.47369 * 175.00236 * 11 9 8 40 40 H 0.96998 * 120.00102 * 359.97438 * 12 11 9 41 41 H 1.08996 * 109.46933 * 300.00027 * 15 13 12 42 42 H 1.09008 * 109.47224 * 59.99562 * 15 13 12 43 43 H 1.08996 * 109.47701 * 300.00212 * 16 15 13 44 44 H 1.08999 * 109.46977 * 60.00202 * 16 15 13 45 45 H 0.97002 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.1457 3.5690 -1.3075 7 6 3.6705 3.5702 -1.1821 8 6 4.0754 2.8862 0.1253 9 6 3.5648 1.4439 0.1255 10 1 3.9991 0.9046 -0.7164 11 6 3.9691 0.7600 1.4330 12 7 5.4288 0.6544 1.4979 13 6 6.0162 0.0817 2.5673 14 8 5.3364 -0.3458 3.4760 15 6 7.5178 -0.0263 2.6343 16 6 7.9221 -0.7103 3.9417 17 6 9.4237 -0.8189 4.0085 18 1 10.0292 -0.4378 3.1994 19 6 10.0246 -1.4049 5.1024 20 7 9.2873 -1.8695 6.0874 21 14 11.8860 -1.5388 5.1854 22 1 12.4828 -0.1801 5.1332 23 1 12.2783 -2.2040 6.4539 24 1 12.3763 -2.3394 4.0350 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 -1.3968 31 1 2.0698 1.5877 -2.1491 32 1 1.7114 4.1083 -0.4656 33 1 1.8576 4.0562 -2.2390 34 1 4.1048 3.0310 -2.0239 35 1 4.0342 4.5978 -1.1818 36 1 5.1616 2.8874 0.2149 37 1 3.6410 3.4254 0.9671 38 1 3.6095 1.3484 2.2771 39 1 3.5306 -0.2372 1.4722 40 1 5.9726 0.9960 0.7709 41 1 7.8778 -0.6140 1.7899 42 1 7.9560 0.9711 2.5958 43 1 7.5621 -0.1223 4.7860 44 1 7.4840 -1.7076 3.9806 45 1 9.7100 -2.2820 6.8568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452419340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = -112.725261 kcal Electronic energy + Delta-G solvation = -20522.730584 eV Core-core repulsion = 17536.971865 eV Total energy + Delta-G solvation = -2985.758719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98322 -39.88838 -35.92721 -35.51091 -34.83776 -33.14038 -31.94069 -29.96007 -28.10122 -26.29149 -24.84109 -23.57127 -22.07566 -21.61219 -21.20538 -20.53151 -18.80486 -17.48237 -17.03655 -16.66633 -16.42206 -16.04228 -15.66535 -15.42510 -14.96954 -14.74294 -14.37645 -14.23986 -14.18670 -14.01282 -13.50544 -13.29217 -13.20725 -12.78029 -12.72538 -12.50521 -12.43433 -12.25704 -11.96434 -11.91020 -11.87579 -11.63998 -11.61476 -11.32284 -11.29003 -10.91665 -10.79653 -10.61564 -10.56052 -9.99870 -8.17619 -6.32073 1.42058 1.46930 1.54632 1.73386 2.29156 2.46147 3.15071 3.64914 3.68573 3.81279 4.06866 4.09334 4.23919 4.32604 4.39087 4.46606 4.51765 4.53727 4.55660 4.58641 4.61726 4.77983 4.80303 4.85798 4.87983 5.00429 5.07600 5.15149 5.19315 5.20846 5.28716 5.32563 5.38517 5.39657 5.43778 5.48187 5.55152 5.57266 5.63416 5.66691 5.85708 6.17835 6.63876 6.86393 7.36810 7.38876 8.94973 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.003143 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.294179 B = 8907.946409 C = 9516.936489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.075 4.075 4 H 0.065 0.935 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.081 4.081 10 H 0.087 0.913 11 C 0.120 3.880 12 N -0.716 5.716 13 C 0.508 3.492 14 O -0.592 6.592 15 C -0.120 4.120 16 C 0.042 3.958 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.104 0.896 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 11.224 -20.614 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.146 4.146 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.099 4.099 10 H 0.105 0.895 11 C -0.003 4.003 12 N -0.370 5.370 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.159 4.159 16 C 0.004 3.996 17 C -0.582 4.582 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.213 1.213 24 H -0.186 1.186 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.252 0.748 41 H 0.122 0.878 42 H 0.122 0.878 43 H -0.001 1.001 44 H 0.000 1.000 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.500 10.851 -19.824 27.404 hybrid contribution 0.885 -0.304 0.611 1.118 sum -14.614 10.546 -19.213 26.343 Atomic orbital electron populations 1.21798 0.95167 1.01715 1.02144 1.21687 0.96625 0.96403 1.01791 1.21102 0.93230 0.96024 0.99054 0.91703 1.21584 1.01134 0.95517 0.96347 1.21554 0.95548 0.96671 1.01992 1.21513 0.96176 1.00619 0.96998 1.21612 1.00804 0.94425 0.98524 1.21351 0.96682 0.96437 0.95480 0.89506 1.21520 0.79876 1.00351 0.98595 1.45931 1.08017 1.61251 1.21755 1.21354 0.91684 0.75989 0.81297 1.90648 1.66952 1.49858 1.39814 1.21635 0.89519 1.03700 1.01065 1.18682 0.95143 0.93850 0.91891 1.21700 0.92581 1.38920 1.05039 0.90538 1.26163 1.04292 0.94891 0.95181 1.70175 1.37896 1.40580 1.09195 0.85357 0.78274 0.78965 0.77542 1.18637 1.21338 1.18635 0.92892 0.93141 0.91406 0.91468 0.93199 0.90998 0.91495 0.92463 0.91102 0.91326 0.91582 0.91631 0.92686 0.93553 0.92571 0.74813 0.87752 0.87775 1.00060 1.00046 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.44 16 2 C -0.13 -2.08 5.19 30.59 0.16 -1.92 16 3 C -0.08 -1.14 1.72 -10.79 -0.02 -1.16 16 4 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.11 -1.26 4.96 30.59 0.15 -1.11 16 6 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 7 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 8 C -0.12 -1.78 5.08 30.59 0.16 -1.63 16 9 C -0.08 -1.35 1.75 -10.79 -0.02 -1.37 16 10 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 11 C 0.12 3.02 4.85 86.38 0.42 3.44 16 12 N -0.72 -19.80 5.28 -463.07 -2.45 -22.25 16 13 C 0.51 20.29 7.83 87.66 0.69 20.97 16 14 O -0.59 -30.20 15.98 -3.01 -0.05 -30.25 16 15 C -0.12 -4.89 5.64 29.84 0.17 -4.73 16 16 C 0.04 2.39 4.26 29.85 0.13 2.52 16 17 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 20 N -0.94 -60.41 13.29 21.45 0.28 -60.12 16 21 Si 0.98 44.67 29.54 68.60 2.03 46.69 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.78 6.56 -2.39 -0.02 0.76 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.01 6.07 -2.39 -0.01 1.00 16 30 H 0.07 0.76 6.56 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.00 7.18 -2.39 -0.02 0.98 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.58 6.07 -2.39 -0.01 1.56 16 40 H 0.41 8.40 7.66 -92.71 -0.71 7.69 16 41 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 43 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 44 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -75.79 349.12 3.63 -72.16 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.23 Total: 13.76 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 3.58 Total: -20.00 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.16 Total: -82.37 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.79 3.63 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452419340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.565 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds