Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53007 * 109.47271 * 2 1 4 4 C 1.52999 * 109.47165 * 240.00630 * 2 1 3 5 5 C 1.50693 * 109.47396 * 59.99503 * 4 2 1 6 6 H 1.08002 * 120.00411 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00028 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47424 * 90.00258 * 9 7 5 11 11 H 1.48504 * 109.47064 * 210.00193 * 9 7 5 12 12 H 1.48501 * 109.47309 * 330.00329 * 9 7 5 13 13 C 1.52996 * 109.47738 * 120.00286 * 2 1 3 14 14 N 1.46909 * 109.46874 * 305.29149 * 13 2 1 15 15 C 1.45603 * 110.99883 * 273.99767 * 14 13 2 16 16 C 1.50995 * 113.19949 * 180.68530 * 15 14 13 17 17 C 1.50426 * 115.15838 * 42.91547 * 16 15 14 18 18 H 1.08999 * 109.31817 * 197.80818 * 17 16 15 19 19 O 1.44018 * 111.93049 * 76.59964 * 17 16 15 20 20 C 1.44081 * 106.27206 * 195.27516 * 19 17 16 21 21 C 1.54335 * 107.13357 * 26.80470 * 20 19 17 22 22 C 1.53969 * 113.62232 * 319.56012 * 17 16 15 23 23 H 1.08999 * 112.32688 * 281.28334 * 22 17 16 24 24 C 1.46167 * 110.99747 * 148.15645 * 14 13 2 25 25 H 1.09005 * 109.47477 * 299.99676 * 1 2 3 26 26 H 1.08998 * 109.47964 * 59.99926 * 1 2 3 27 27 H 1.09006 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47344 * 166.34604 * 3 2 1 29 29 H 1.09003 * 109.47050 * 286.35275 * 3 2 1 30 30 H 1.09007 * 109.46537 * 46.34453 * 3 2 1 31 31 H 1.09000 * 109.47347 * 180.02562 * 4 2 1 32 32 H 1.09008 * 109.46713 * 299.99637 * 4 2 1 33 33 H 0.97003 * 120.00120 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47766 * 185.28867 * 13 2 1 35 35 H 1.08995 * 109.47194 * 65.28588 * 13 2 1 36 36 H 1.08997 * 108.73293 * 59.72350 * 15 14 13 37 37 H 1.08996 * 108.63776 * 301.57502 * 15 14 13 38 38 H 1.08999 * 108.34601 * 281.44360 * 16 15 14 39 39 H 1.09005 * 108.34344 * 164.38658 * 16 15 14 40 40 H 1.09006 * 109.90755 * 267.42536 * 20 19 17 41 41 H 1.09008 * 110.05613 * 146.26577 * 20 19 17 42 42 H 1.09000 * 110.54823 * 117.41554 * 21 20 19 43 43 H 1.08999 * 110.54872 * 240.22533 * 21 20 19 44 44 H 1.08997 * 109.38695 * 307.89937 * 24 14 13 45 45 H 1.09000 * 109.38229 * 67.68716 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9169 0.8676 -2.3806 7 6 1.8702 -0.4820 -3.7320 8 7 2.6255 -1.5518 -3.8528 9 14 1.2469 0.3982 -5.2572 10 1 2.2247 1.4399 -5.6620 11 1 1.0815 -0.5812 -6.3611 12 1 -0.0612 1.0357 -4.9609 13 6 2.0400 -0.7213 1.2491 14 7 1.4489 -0.1065 2.4453 15 6 2.2354 1.0363 2.8875 16 6 1.6799 1.6971 4.1263 17 6 1.2168 0.7529 5.2018 18 1 0.5616 1.2852 5.8913 19 8 2.3210 0.1893 5.9347 20 6 1.7915 -0.9382 6.6588 21 6 0.5714 -1.4546 5.8672 22 6 0.4710 -0.4806 4.6606 23 1 -0.5613 -0.2558 4.3928 24 6 1.2589 -1.0966 3.5036 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1025 1.4522 0.2426 29 1 1.8883 1.8816 -0.9861 30 1 1.4921 2.0215 0.7436 31 1 3.1299 -0.7215 -1.2491 32 1 1.6766 -1.7489 -1.2493 33 1 2.8593 -1.8836 -4.7338 34 1 3.1259 -0.6400 1.2978 35 1 1.7561 -1.7726 1.2030 36 1 2.2679 1.7712 2.0831 37 1 3.2513 0.7005 3.0954 38 1 0.8370 2.3227 3.8327 39 1 2.4513 2.3431 4.5457 40 1 1.4818 -0.6264 7.6563 41 1 2.5450 -1.7224 6.7326 42 1 0.7427 -2.4743 5.5224 43 1 -0.3305 -1.4023 6.4771 44 1 0.7100 -1.9503 3.1061 45 1 2.2314 -1.4291 3.8667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573489182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -53.785872 kcal Electronic energy + Delta-G solvation = -21820.260412 eV Core-core repulsion = 18837.057496 eV Total energy + Delta-G solvation = -2983.202916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52269 -38.01122 -35.36316 -32.84943 -32.48536 -31.43218 -28.84543 -26.94875 -26.40922 -25.97620 -23.66993 -23.25885 -22.18676 -21.25571 -19.20571 -17.86741 -16.60860 -16.16563 -15.87143 -15.53630 -15.34106 -14.53723 -14.46213 -14.39705 -13.45254 -13.13803 -13.08758 -12.76029 -12.53813 -12.24179 -12.03627 -11.95240 -11.72622 -11.49002 -11.33781 -10.96994 -10.93487 -10.79763 -10.72356 -10.55912 -10.43521 -10.23992 -10.18372 -9.87096 -9.66971 -9.56400 -8.90234 -8.80188 -8.28064 -7.80071 -5.92848 -3.92504 3.35537 3.42118 3.45144 3.75974 4.09408 4.45062 4.52318 4.62375 4.75046 4.87864 5.03918 5.14861 5.30643 5.39801 5.42892 5.44244 5.56184 5.61520 5.68817 5.71842 5.80747 5.84672 5.91435 5.97176 6.05730 6.08702 6.20001 6.24464 6.36167 6.41003 6.62229 6.77539 6.80047 6.87192 6.92187 7.29843 7.30717 7.35290 7.54797 7.57170 7.75816 7.91498 8.08039 8.53058 9.12995 9.69937 11.18882 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043731 B = 0.004037 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.130025 B = 6933.716024 C = 7109.403853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.133 4.133 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.536 5.536 15 C 0.049 3.951 16 C -0.108 4.108 17 C 0.086 3.914 18 H 0.059 0.941 19 O -0.375 6.375 20 C 0.046 3.954 21 C -0.155 4.155 22 C -0.110 4.110 23 H 0.099 0.901 24 C 0.070 3.930 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.012 0.988 32 H 0.013 0.987 33 H 0.258 0.742 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 2.593 19.594 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.190 4.190 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.057 4.057 14 N -0.260 5.260 15 C -0.078 4.078 16 C -0.146 4.146 17 C 0.029 3.971 18 H 0.077 0.923 19 O -0.294 6.294 20 C -0.031 4.031 21 C -0.193 4.193 22 C -0.129 4.129 23 H 0.117 0.883 24 C -0.058 4.058 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.815 2.730 19.350 19.911 hybrid contribution 0.362 -0.123 -0.601 0.712 sum -3.453 2.608 18.750 19.242 Atomic orbital electron populations 1.21566 0.95116 1.00225 1.00135 1.20566 0.95781 0.95013 0.93886 1.22001 0.98608 0.96879 1.01481 1.19129 0.95890 0.95147 0.90303 1.21244 1.30634 1.11839 0.90599 0.92245 1.25015 0.95454 0.95115 0.99022 1.69968 1.37457 1.23184 1.23220 0.86676 0.79250 0.79413 0.83151 1.20846 1.21419 1.19909 1.22315 0.96174 0.97794 0.89372 1.60768 1.51412 1.08405 1.05412 1.21743 0.94293 0.94721 0.97077 1.20600 1.02125 0.97752 0.94078 1.22220 0.87721 0.94382 0.92816 0.92335 1.88946 1.32810 1.44525 1.63118 1.23171 0.95867 0.89153 0.94895 1.23183 0.98584 1.00514 0.97045 1.22639 1.00708 0.94753 0.94784 0.88259 1.21888 0.98237 0.94475 0.91210 0.93648 0.92915 0.94585 0.94554 0.91587 0.93836 0.97001 0.96825 0.93215 0.94869 0.91851 0.88423 0.95934 0.90401 0.91003 0.92629 0.90173 0.90253 0.90712 0.90868 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 7.96 37.15 0.30 -1.91 16 2 C -0.05 -1.04 0.61 -154.51 -0.09 -1.14 16 3 C -0.13 -2.52 6.89 37.16 0.26 -2.26 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.50 -13.86 7.46 -34.44 -0.26 -14.12 16 6 H 0.06 1.59 5.78 -52.49 -0.30 1.29 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.25 4.24 -3.82 -0.02 1.23 16 14 N -0.54 -8.09 3.47 -237.66 -0.82 -8.91 16 15 C 0.05 0.70 5.00 -5.53 -0.03 0.67 16 16 C -0.11 -1.28 5.62 -29.02 -0.16 -1.45 16 17 C 0.09 0.99 3.19 -27.51 -0.09 0.90 16 18 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 19 O -0.37 -4.79 10.99 -35.23 -0.39 -5.18 16 20 C 0.05 0.45 7.63 37.86 0.29 0.73 16 21 C -0.16 -1.38 6.43 -24.77 -0.16 -1.54 16 22 C -0.11 -1.21 3.69 -88.88 -0.33 -1.54 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 C 0.07 0.93 4.30 -4.25 -0.02 0.91 16 25 H 0.04 0.80 7.47 -51.93 -0.39 0.41 16 26 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.66 7.78 -51.93 -0.40 0.26 16 29 H 0.07 1.38 6.29 -51.93 -0.33 1.05 16 30 H 0.04 0.73 6.13 -51.92 -0.32 0.41 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.03 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.06 1.14 7.56 -51.93 -0.39 0.74 16 36 H 0.10 1.43 4.10 -51.93 -0.21 1.21 16 37 H 0.02 0.35 7.97 -51.93 -0.41 -0.07 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 45 H 0.03 0.45 7.78 -51.93 -0.40 0.04 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -29.79 331.61 -9.10 -38.89 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.08 Total: -2.84 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.52 Total: -17.33 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.09 Total: -35.19 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.39 Total: -5.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.79 -9.10 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573489182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.899 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds