Wall clock time and date at job start Mon Mar 30 2020 00:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52991 * 109.47177 * 2 1 4 4 C 1.53001 * 109.46852 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46933 * 184.86165 * 4 3 2 6 6 H 1.08998 * 109.47457 * 305.63097 * 5 4 3 7 7 C 1.50700 * 109.47197 * 185.62554 * 5 4 3 8 8 O 1.21290 * 120.00114 * 305.47044 * 7 5 4 9 9 N 1.34778 * 119.99888 * 125.19014 * 7 5 4 10 10 C 1.37098 * 119.99950 * 174.74454 * 9 7 5 11 11 H 1.08001 * 120.00216 * 8.96868 * 10 9 7 12 12 C 1.38950 * 119.99865 * 188.96553 * 10 9 7 13 13 N 1.31412 * 119.99934 * 7.24209 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 187.24301 * 12 10 9 15 15 H 1.48500 * 109.47282 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47278 * 119.99916 * 14 12 10 17 17 H 1.48505 * 109.46990 * 239.99960 * 14 12 10 18 18 C 1.46493 * 120.00071 * 354.74471 * 9 7 5 19 19 C 1.53006 * 117.50107 * 311.84799 * 18 9 7 20 20 C 1.53003 * 117.50262 * 243.18444 * 18 9 7 21 21 C 1.52999 * 109.46867 * 65.62718 * 5 4 3 22 22 C 1.53003 * 109.47328 * 63.59238 * 21 5 4 23 23 C 1.53002 * 109.47082 * 183.58823 * 21 5 4 24 24 H 1.09000 * 109.46559 * 60.00125 * 1 2 3 25 25 H 1.09001 * 109.46911 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47301 * 300.00303 * 1 2 3 27 27 H 1.09004 * 109.46884 * 239.99248 * 2 1 3 28 28 H 1.09000 * 109.46559 * 119.99875 * 2 1 3 29 29 H 1.08995 * 109.47252 * 59.99667 * 3 2 1 30 30 H 1.09000 * 109.47275 * 299.99437 * 3 2 1 31 31 H 1.08999 * 109.47010 * 64.86832 * 4 3 2 32 32 H 1.08998 * 109.47226 * 304.86363 * 4 3 2 33 33 H 0.97000 * 119.99552 * 184.99089 * 13 12 10 34 34 H 1.09003 * 115.55068 * 97.50987 * 18 9 7 35 35 H 1.09005 * 117.49396 * 359.97438 * 19 18 9 36 36 H 1.08998 * 117.50260 * 145.01713 * 19 18 9 37 37 H 1.09001 * 117.49967 * 214.98050 * 20 18 9 38 38 H 1.09000 * 117.49628 * 359.97438 * 20 18 9 39 39 H 1.08993 * 109.47671 * 303.59137 * 21 5 4 40 40 H 1.09003 * 109.47374 * 65.66781 * 22 21 5 41 41 H 1.08996 * 109.47650 * 185.67189 * 22 21 5 42 42 H 1.09005 * 109.46579 * 305.67321 * 22 21 5 43 43 H 1.08993 * 109.47179 * 64.94566 * 23 21 5 44 44 H 1.09005 * 109.47157 * 184.94592 * 23 21 5 45 45 H 1.09004 * 109.47250 * 304.94140 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0801 2.8797 0.1229 6 1 3.6371 3.4906 -0.6637 7 6 5.5807 2.8937 -0.0150 8 8 6.2624 2.1942 0.7040 9 7 6.1649 3.6794 -0.9413 10 6 7.5315 3.7748 -0.9958 11 1 8.1432 3.1151 -0.3982 12 6 8.1296 4.7201 -1.8201 13 7 7.3912 5.6149 -2.4372 14 14 9.9833 4.7188 -2.0509 15 1 10.5808 3.6185 -1.2525 16 1 10.3031 4.5189 -3.4872 17 1 10.5396 6.0184 -1.5961 18 6 5.3398 4.4315 -1.8897 19 6 4.2228 3.6736 -2.6101 20 6 5.4817 4.0910 -3.3745 21 6 3.6883 3.4453 1.4894 22 6 4.3820 2.6424 2.5917 23 6 4.1194 4.9106 1.5776 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5140 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9562 -0.8900 31 1 3.9338 1.0057 -0.9295 32 1 3.9330 0.8550 0.8441 33 1 7.7990 6.2284 -3.0683 34 1 5.1534 5.4730 -1.6277 35 1 4.1023 2.6152 -2.3787 36 1 3.3019 4.2166 -2.8226 37 1 5.3885 4.9084 -4.0895 38 1 6.1894 3.3076 -3.6458 39 1 2.6078 3.3763 1.6151 40 1 5.4597 2.7927 2.5272 41 1 4.0259 2.9789 3.5654 42 1 4.1548 1.5836 2.4678 43 1 3.5598 5.4984 0.8501 44 1 3.9201 5.2884 2.5805 45 1 5.1857 4.9891 1.3651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598807712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:38 Heat of formation + Delta-G solvation = -24.650314 kcal Electronic energy + Delta-G solvation = -22295.856840 eV Core-core repulsion = 19313.917337 eV Total energy + Delta-G solvation = -2981.939503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.53204 -36.78259 -35.69159 -34.25333 -32.88086 -31.03299 -30.56206 -26.96417 -26.44871 -24.68525 -22.34245 -21.72137 -21.39465 -21.16236 -19.82782 -17.68549 -16.94047 -15.78769 -15.44044 -15.05043 -14.70284 -14.15147 -13.97320 -13.71928 -13.53346 -13.26287 -12.77693 -12.46337 -12.28415 -12.10360 -12.03619 -11.48929 -11.31130 -11.22570 -11.10739 -11.03148 -10.87997 -10.64947 -10.59164 -10.55850 -10.26384 -10.20488 -10.18312 -9.99322 -9.85583 -9.72400 -9.05192 -8.70976 -8.04919 -7.74041 -6.15818 -3.73755 3.18158 3.28884 3.35478 3.95782 4.16331 4.76579 4.85941 5.04783 5.07310 5.18833 5.22304 5.32918 5.47599 5.57180 5.62922 5.77660 5.81645 5.89662 5.90431 5.98022 6.03211 6.10315 6.14097 6.19192 6.22424 6.25814 6.28940 6.35646 6.36777 6.45377 6.53900 6.56690 6.64696 6.72948 6.80115 6.89921 6.95335 7.05564 7.15337 7.33085 7.63814 8.14440 8.57540 9.27957 9.54069 10.09114 10.80677 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.006012 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.505389 B = 4655.994854 C = 5057.698293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.106 4.106 6 H 0.094 0.906 7 C 0.463 3.537 8 O -0.588 6.588 9 N -0.428 5.428 10 C -0.303 4.303 11 H 0.102 0.898 12 C 0.031 3.969 13 N -0.877 5.877 14 Si 0.919 3.081 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.153 3.847 19 C -0.237 4.237 20 C -0.130 4.130 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.148 4.148 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.263 0.737 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -3.338 1.546 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.128 4.128 6 H 0.112 0.888 7 C 0.252 3.748 8 O -0.473 6.473 9 N -0.146 5.146 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.172 4.172 13 N -0.516 5.516 14 Si 0.747 3.253 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.047 3.953 19 C -0.275 4.275 20 C -0.168 4.168 21 C -0.095 4.095 22 C -0.205 4.205 23 C -0.205 4.205 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.985 -3.461 1.808 11.658 hybrid contribution 0.935 0.229 -0.483 1.077 sum -10.050 -3.232 1.325 10.640 Atomic orbital electron populations 1.21777 0.96336 1.01109 1.01628 1.21537 0.95304 0.97525 1.01895 1.21677 0.95914 0.96131 1.01936 1.21480 0.94203 0.96169 1.02264 1.21517 0.94995 0.97550 0.98714 0.88843 1.19808 0.88915 0.83650 0.82444 1.90463 1.65437 1.44615 1.46758 1.43275 1.05657 1.39170 1.26504 1.19770 0.80827 1.16541 1.25880 0.88009 1.25147 0.99718 0.94881 0.97415 1.70028 1.35242 1.18488 1.27887 0.85958 0.83292 0.78104 0.77953 1.19474 1.20881 1.20935 1.20870 0.91962 0.93564 0.88883 1.23765 0.94079 1.00770 1.08856 1.22690 0.96252 1.01578 0.96235 1.20945 0.99029 0.95140 0.94409 1.21988 1.03180 0.99420 0.95923 1.21861 1.02691 0.95575 1.00416 0.92893 0.93200 0.92908 0.92243 0.92182 0.91804 0.92218 0.92549 0.91043 0.92609 0.87676 0.89620 0.89586 0.89808 0.90146 0.91608 0.90302 0.94631 0.92902 0.93122 0.93472 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.43 5.93 -26.73 -0.16 -1.59 16 3 C -0.12 -1.53 5.09 -26.74 -0.14 -1.67 16 4 C -0.10 -1.69 4.07 -26.73 -0.11 -1.80 16 5 C -0.11 -1.95 0.99 -91.77 -0.09 -2.04 16 6 H 0.09 1.66 4.43 -51.93 -0.23 1.43 16 7 C 0.46 10.91 4.88 -10.98 -0.05 10.86 16 8 O -0.59 -15.66 13.78 5.55 0.08 -15.59 16 9 N -0.43 -10.69 2.94 -107.73 -0.32 -11.01 16 10 C -0.30 -8.33 9.45 -14.93 -0.14 -8.47 16 11 H 0.10 2.98 7.20 -52.49 -0.38 2.61 16 12 C 0.03 0.80 5.18 -17.47 -0.09 0.71 16 13 N -0.88 -22.44 9.25 55.50 0.51 -21.92 16 14 Si 0.92 20.86 29.56 -169.99 -5.03 15.83 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.15 3.39 3.51 -67.93 -0.24 3.15 16 19 C -0.24 -4.33 7.74 -26.69 -0.21 -4.53 16 20 C -0.13 -2.71 8.32 -26.69 -0.22 -2.93 16 21 C -0.08 -1.28 2.56 -90.62 -0.23 -1.51 16 22 C -0.15 -2.59 8.19 37.16 0.30 -2.29 16 23 C -0.15 -2.54 9.07 37.16 0.34 -2.20 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.79 6.30 -51.93 -0.33 0.47 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.97 7.47 -51.93 -0.39 0.58 16 32 H 0.07 1.24 6.15 -51.93 -0.32 0.92 16 33 H 0.26 6.47 8.32 -40.82 -0.34 6.13 16 34 H 0.11 2.45 7.81 -51.93 -0.41 2.05 16 35 H 0.09 1.57 6.29 -51.93 -0.33 1.25 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 40 H 0.08 1.66 6.07 -51.93 -0.32 1.35 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.90 6.16 -51.93 -0.32 0.58 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.33 7.18 -51.93 -0.37 0.95 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -28.20 339.15 -8.23 -36.43 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.92 Total: 6.55 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.67 Total: -15.40 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.20 Total: -32.93 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.08 Total: -15.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.20 -8.23 -36.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598807712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.777 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds