Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.53001 * 109.46855 * 119.99764 * 2 1 3 5 5 N 1.46490 * 109.47305 * 65.00203 * 4 2 1 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 2 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47241 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47303 * 119.99759 * 11 9 7 14 14 H 1.48495 * 109.47340 * 239.99921 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 2 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 5 19 19 C 1.52992 * 109.47482 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.50015 * 243.74696 * 20 19 18 22 22 C 1.53008 * 117.50075 * 175.09104 * 20 19 18 23 23 H 1.09007 * 109.46603 * 60.00486 * 1 2 3 24 24 H 1.08998 * 109.46903 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47016 * 300.00346 * 1 2 3 26 26 H 1.08997 * 109.47728 * 239.99828 * 2 1 3 27 27 H 1.09005 * 109.47402 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47528 * 299.99818 * 3 2 1 29 29 H 1.09002 * 109.47349 * 59.99651 * 3 2 1 30 30 H 1.09006 * 109.47320 * 305.00085 * 4 2 1 31 31 H 1.09002 * 109.47139 * 185.00310 * 4 2 1 32 32 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 33 33 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 34 34 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 37 37 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 38 38 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 39 39 H 1.09002 * 109.47103 * 300.00247 * 19 18 17 40 40 H 1.09001 * 109.47066 * 60.00169 * 19 18 17 41 41 H 1.08997 * 115.55067 * 29.41999 * 20 19 18 42 42 H 1.09000 * 117.49856 * 359.97438 * 21 20 19 43 43 H 1.08999 * 117.49661 * 145.01806 * 21 20 19 44 44 H 1.08999 * 117.49506 * 214.98514 * 22 20 19 45 45 H 1.09002 * 117.49810 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 0.3746 -2.5659 1.7613 7 6 0.5715 -2.9407 3.2076 8 1 1.5508 -2.8644 3.6567 9 6 -0.4983 -3.3811 3.9575 10 7 -1.6909 -3.4736 3.4107 11 14 -0.2543 -3.8451 5.7504 12 1 1.1706 -3.6530 6.1219 13 1 -1.1098 -2.9836 6.6055 14 1 -0.6296 -5.2681 5.9490 15 6 2.4715 -3.0330 0.6117 16 8 2.1510 -4.2016 0.5636 17 6 3.7863 -2.5875 0.0251 18 6 4.5172 -3.7955 -0.5642 19 6 5.8517 -3.3433 -1.1603 20 6 6.5829 -4.5514 -1.7491 21 6 7.9185 -4.9463 -1.1157 22 6 7.8912 -4.2893 -2.4980 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6053 -0.2617 2.1371 31 1 3.1263 -0.6443 1.2953 32 1 -0.3484 -1.7531 1.6919 33 1 0.0042 -3.4297 1.2093 34 1 -2.4437 -3.7831 3.9384 35 1 3.6038 -1.8541 -0.7604 36 1 4.3992 -2.1382 0.8065 37 1 4.6997 -4.5286 0.2215 38 1 3.9046 -4.2453 -1.3455 39 1 5.6688 -2.6103 -1.9461 40 1 6.4646 -2.8933 -0.3793 41 1 5.9440 -5.3537 -2.1178 42 1 8.2765 -4.3452 -0.2799 43 1 8.1584 -6.0085 -1.0681 44 1 8.1129 -4.9195 -3.3592 45 1 8.2307 -3.2561 -2.5716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813236205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = -45.405890 kcal Electronic energy + Delta-G solvation = -20860.340959 eV Core-core repulsion = 17877.501427 eV Total energy + Delta-G solvation = -2982.839532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.24436 -37.75291 -36.33081 -33.79487 -33.26234 -32.22654 -28.71561 -27.01754 -26.79313 -25.32927 -23.20279 -22.49750 -21.39328 -20.47616 -20.15723 -18.15115 -16.51931 -16.22855 -15.69428 -15.54128 -15.11603 -14.48893 -14.43956 -14.22965 -13.82045 -13.31123 -13.00630 -12.45341 -12.29038 -12.17928 -12.03843 -11.81212 -11.66600 -11.61002 -11.39327 -11.33331 -10.98370 -10.91467 -10.88686 -10.72914 -10.60989 -10.37317 -10.27984 -10.19388 -10.08434 -9.90709 -9.52475 -8.78090 -8.39199 -7.55558 -6.00850 -4.04861 3.31273 3.38797 3.42447 3.53919 3.69134 4.00654 4.47045 4.57924 4.81773 4.83299 5.06030 5.12021 5.19042 5.23160 5.29725 5.33443 5.38159 5.49010 5.49926 5.67175 5.75005 5.77550 5.79810 5.85716 5.90977 5.92184 5.97917 6.00418 6.12412 6.18152 6.20596 6.22614 6.33486 6.41993 6.57472 6.60056 6.72356 7.16656 7.50175 7.63375 7.96525 8.29401 8.51958 8.95619 9.19551 9.60148 11.07026 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004855 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.315064 B = 5766.426940 C = 7126.849815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.242 3.758 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.503 3.497 16 O -0.544 6.544 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.088 4.088 20 C -0.149 4.149 21 C -0.182 4.182 22 C -0.186 4.186 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.997 6.792 -9.898 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.122 3.878 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.290 3.710 16 O -0.422 6.422 17 C -0.181 4.181 18 C -0.138 4.138 19 C -0.126 4.126 20 C -0.167 4.167 21 C -0.219 4.219 22 C -0.223 4.223 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.611 6.119 -9.859 17.886 hybrid contribution 0.040 -0.186 1.082 1.099 sum 13.651 5.934 -8.777 17.280 Atomic orbital electron populations 1.21927 0.94673 1.03067 1.00899 1.21586 0.97065 0.95744 0.98958 1.21781 1.00505 0.96079 1.01733 1.21517 0.99011 0.82482 0.97803 1.48213 1.21834 1.06300 1.56432 1.19377 0.78898 0.96285 0.93192 1.21509 0.95017 1.44103 0.95637 0.92548 1.24924 0.95084 0.95502 0.98628 1.69942 0.99781 1.47261 1.36466 0.86474 0.78118 0.78223 0.84799 1.19852 1.21014 1.20922 1.20409 0.85685 0.86106 0.78832 1.90657 1.75305 1.17581 1.58658 1.21731 0.95538 0.99676 1.01106 1.21293 0.94422 0.97162 1.00918 1.21212 0.96155 0.95706 0.99504 1.22378 0.90002 1.00813 1.03482 1.23033 1.01430 1.01104 0.96348 1.22965 1.02194 1.01673 0.95432 0.93696 0.91270 0.92548 0.91602 0.92942 0.92896 0.92528 0.90134 0.91722 0.94260 0.94190 0.92862 0.89853 0.89811 0.91159 0.91351 0.91744 0.91989 0.87719 0.88865 0.89074 0.89124 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.56 3.12 -90.62 -0.28 -1.85 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C 0.12 1.88 4.70 -4.05 -0.02 1.86 16 5 N -0.60 -12.55 2.28 -175.06 -0.40 -12.95 16 6 C 0.24 6.29 4.23 -5.19 -0.02 6.27 16 7 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 11 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 15 C 0.50 10.50 7.67 -10.98 -0.08 10.41 16 16 O -0.54 -13.88 15.56 5.56 0.09 -13.79 16 17 C -0.14 -2.07 4.25 -27.88 -0.12 -2.19 16 18 C -0.10 -1.40 4.46 -26.74 -0.12 -1.52 16 19 C -0.09 -0.95 5.50 -26.74 -0.15 -1.10 16 20 C -0.15 -1.55 5.73 -90.62 -0.52 -2.07 16 21 C -0.18 -1.73 10.18 -26.69 -0.27 -2.00 16 22 C -0.19 -1.65 10.25 -26.69 -0.27 -1.92 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.27 5.89 -51.93 -0.31 0.97 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.05 7.26 -51.93 -0.38 0.67 16 36 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 37 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 41 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.09 0.85 8.03 -51.93 -0.42 0.44 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -32.28 359.66 -9.14 -41.42 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.33 Total: -0.22 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.63 Total: -10.94 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.34 Total: -38.96 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.28 -9.14 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813236205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.982 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds