Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47363 * 2 1 4 4 H 1.09002 * 110.05381 * 53.58586 * 3 2 1 5 5 C 1.54261 * 110.03299 * 292.16742 * 3 2 1 6 6 C 1.54885 * 104.19725 * 217.10104 * 5 3 2 7 7 C 1.54887 * 102.74727 * 37.94668 * 6 5 3 8 8 C 1.53871 * 110.03154 * 174.99956 * 3 2 1 9 9 C 1.52998 * 110.07531 * 359.97438 * 8 3 2 10 10 C 1.50701 * 110.03637 * 238.56947 * 8 3 2 11 11 O 1.21278 * 119.99482 * 1.38183 * 10 8 3 12 12 N 1.34771 * 120.00074 * 181.37976 * 10 8 3 13 13 C 1.46505 * 119.99643 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46903 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46873 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46545 * 299.99920 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99646 * 1 2 3 27 27 H 1.09003 * 109.46545 * 240.00080 * 2 1 3 28 28 H 1.08999 * 109.47144 * 120.00354 * 2 1 3 29 29 H 1.09010 * 110.48777 * 98.42703 * 5 3 2 30 30 H 1.08992 * 110.60053 * 335.84104 * 5 3 2 31 31 H 1.08997 * 110.76062 * 279.63229 * 6 5 3 32 32 H 1.09006 * 110.75607 * 156.25422 * 6 5 3 33 33 H 1.08997 * 110.49059 * 203.37751 * 7 6 5 34 34 H 1.09004 * 110.48852 * 80.72874 * 7 6 5 35 35 H 1.08999 * 109.47272 * 299.28130 * 9 8 3 36 36 H 1.09003 * 109.46978 * 59.28370 * 9 8 3 37 37 H 1.09005 * 109.47349 * 179.27754 * 9 8 3 38 38 H 0.96994 * 120.00413 * 0.02562 * 12 10 8 39 39 H 1.08994 * 109.47383 * 60.00051 * 13 12 10 40 40 H 1.09003 * 109.47228 * 299.99438 * 13 12 10 41 41 H 1.09004 * 109.47180 * 59.99849 * 14 13 12 42 42 H 1.08997 * 109.46702 * 300.00020 * 14 13 12 43 43 H 1.09004 * 109.47139 * 60.00071 * 15 14 13 44 44 H 1.08997 * 109.47675 * 299.99671 * 15 14 13 45 45 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9974 0.8240 5 6 1.7007 2.1229 -1.3422 6 6 2.9290 3.0200 -1.6345 7 6 4.1124 2.1495 -1.1441 8 6 3.5735 1.4592 0.1260 9 6 4.1091 0.0287 0.2126 10 6 3.9825 2.2379 1.3497 11 8 3.1362 2.7156 2.0753 12 7 5.2886 2.4033 1.6378 13 6 5.6861 3.1599 2.8277 14 6 7.2129 3.1982 2.9212 15 6 7.6280 3.9888 4.1636 16 6 9.1317 4.0260 4.2560 17 1 9.7314 3.5353 3.5037 18 6 9.7420 4.6866 5.3010 19 7 11.0544 4.7196 5.3814 20 14 8.7050 5.5349 6.6027 21 1 8.4135 4.5807 7.7027 22 1 7.4301 5.9962 5.9968 23 1 9.4469 6.7021 7.1436 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.7999 2.7292 -1.2455 30 1 1.5759 1.3788 -2.1287 31 1 2.8722 3.9494 -1.0678 32 1 3.0145 3.2219 -2.7023 33 1 4.9719 2.7750 -0.9028 34 1 4.3785 1.4080 -1.8974 35 1 3.6936 -0.4622 1.0926 36 1 3.8190 -0.5226 -0.6820 37 1 5.1962 0.0516 0.2886 38 1 5.9655 2.0216 1.0573 39 1 5.2793 2.6786 3.7170 40 1 5.3013 4.1772 2.7569 41 1 7.6194 3.6798 2.0318 42 1 7.5981 2.1811 2.9918 43 1 7.2215 3.5076 5.0531 44 1 7.2428 5.0060 4.0926 45 1 11.4837 5.1840 6.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878730867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = -79.406145 kcal Electronic energy + Delta-G solvation = -20857.186668 eV Core-core repulsion = 17872.872774 eV Total energy + Delta-G solvation = -2984.313894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74569 -37.93670 -35.48178 -33.62929 -33.15540 -32.04916 -31.05770 -27.82790 -27.17853 -25.51826 -23.74880 -22.63124 -21.62224 -20.64373 -20.02420 -18.42385 -17.20221 -16.62797 -15.90773 -15.69616 -14.98662 -14.91339 -14.61309 -14.10702 -13.90279 -13.76102 -13.55790 -13.38100 -12.71479 -12.60930 -12.47398 -12.01078 -11.94252 -11.67822 -11.66097 -11.23205 -11.18571 -11.07221 -10.94712 -10.87471 -10.78364 -10.56644 -10.42487 -10.14784 -9.94311 -9.76469 -9.40304 -9.23088 -8.82590 -8.56157 -6.07052 -4.05759 2.77044 3.30718 3.34205 3.38499 3.42795 4.24315 4.34564 4.43861 4.52179 4.88028 4.92780 4.97180 5.09032 5.13428 5.19565 5.27051 5.29093 5.43519 5.46429 5.56573 5.57955 5.64121 5.65006 5.66695 5.71996 5.75148 5.84510 5.92860 5.97084 6.01861 6.04712 6.09031 6.16579 6.33788 6.41748 6.44487 6.71627 6.80214 7.22182 7.35694 7.67192 7.76672 8.37600 8.49787 8.96777 9.55273 11.06209 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035705 B = 0.003341 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.007153 B = 8379.267773 C = 8543.459412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.098 0.902 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.114 4.114 8 C -0.082 4.082 9 C -0.140 4.140 10 C 0.520 3.480 11 O -0.544 6.544 12 N -0.724 5.724 13 C 0.114 3.886 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.265 1.265 23 H -0.288 1.288 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.014 0.986 44 H 0.018 0.982 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.496 -9.287 -15.456 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.102 4.102 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.151 4.151 8 C -0.085 4.085 9 C -0.197 4.197 10 C 0.306 3.694 11 O -0.421 6.421 12 N -0.375 5.375 13 C -0.009 4.009 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.189 1.189 23 H -0.214 1.214 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.037 0.963 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.943 -8.863 -14.797 25.619 hybrid contribution 0.071 0.324 0.561 0.652 sum -18.872 -8.539 -14.235 25.134 Atomic orbital electron populations 1.21801 0.96073 1.01258 1.01906 1.21748 0.95633 0.96142 1.01905 1.21862 0.92320 0.96759 0.99271 0.88436 1.22419 0.97904 0.98370 0.96609 1.22495 0.94613 0.98484 1.00796 1.22498 0.98368 0.98875 0.95400 1.21429 0.97390 0.96000 0.93685 1.21990 1.00860 0.94025 1.02832 1.20434 0.82527 0.80054 0.86390 1.90644 1.50530 1.49827 1.51102 1.46147 1.07043 1.55806 1.28499 1.21645 0.97083 0.95654 0.86530 1.21700 0.90865 1.01440 1.01072 1.19501 0.97554 0.95197 0.92643 1.21099 0.89619 1.34526 1.10751 0.91012 1.25030 0.94820 0.95820 0.97805 1.69913 1.08510 1.43608 1.32189 0.86777 0.80913 0.79504 0.82109 1.20236 1.18906 1.21356 0.93038 0.92702 0.92771 0.91912 0.91650 0.91712 0.91591 0.91392 0.91358 0.91099 0.90461 0.91748 0.91152 0.92279 0.76719 0.91888 0.91892 0.92140 0.92156 0.96772 0.96333 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.77 37.16 0.36 -0.84 16 2 C -0.12 -0.99 4.11 -26.73 -0.11 -1.10 16 3 C -0.08 -0.85 2.53 -89.51 -0.23 -1.08 16 4 H 0.10 1.29 6.39 -51.93 -0.33 0.96 16 5 C -0.12 -1.00 5.53 -25.08 -0.14 -1.14 16 6 C -0.13 -1.13 6.91 -24.74 -0.17 -1.31 16 7 C -0.11 -1.02 5.85 -25.07 -0.15 -1.16 16 8 C -0.08 -0.85 0.77 -154.54 -0.12 -0.97 16 9 C -0.14 -1.20 7.09 37.16 0.26 -0.94 16 10 C 0.52 7.46 6.44 -10.99 -0.07 7.39 16 11 O -0.54 -9.90 15.21 5.56 0.08 -9.82 16 12 N -0.72 -10.05 5.14 -60.29 -0.31 -10.36 16 13 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 14 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.39 7.51 -51.93 -0.39 0.00 16 27 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 28 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.49 7.77 -51.93 -0.40 0.09 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 7.40 -51.93 -0.38 0.29 16 34 H 0.08 0.56 7.85 -51.93 -0.41 0.16 16 35 H 0.06 0.59 6.67 -51.93 -0.35 0.25 16 36 H 0.07 0.49 6.83 -51.93 -0.35 0.13 16 37 H 0.06 0.48 7.59 -51.93 -0.39 0.08 16 38 H 0.40 4.56 7.69 -40.82 -0.31 4.24 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -32.03 345.01 -8.16 -40.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.18 Total: -0.20 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.06 Total: -15.13 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.46 Total: -37.40 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.03 -8.16 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878730867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.213 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds