Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46973 * 2 1 4 4 H 1.09001 * 109.46936 * 306.55779 * 3 2 1 5 5 C 1.50690 * 109.47024 * 186.55467 * 3 2 1 6 6 H 1.08005 * 120.00160 * 245.13178 * 5 3 2 7 7 C 1.37880 * 120.00447 * 65.13242 * 5 3 2 8 8 N 1.31515 * 119.99342 * 5.95099 * 7 5 3 9 9 Si 1.86800 * 120.00299 * 185.95546 * 7 5 3 10 10 H 1.48492 * 109.47003 * 94.99448 * 9 7 5 11 11 H 1.48501 * 109.46761 * 214.99433 * 9 7 5 12 12 H 1.48500 * 109.47134 * 334.99063 * 9 7 5 13 13 N 1.46503 * 109.47174 * 66.55273 * 3 2 1 14 14 C 1.34782 * 119.99777 * 266.30309 * 13 3 2 15 15 O 1.21274 * 120.00312 * 5.85354 * 14 13 3 16 16 C 1.50708 * 119.99396 * 185.84869 * 14 13 3 17 17 C 1.52999 * 110.01085 * 172.97168 * 16 14 13 18 18 C 1.54260 * 110.07252 * 51.56017 * 16 14 13 19 19 C 1.54884 * 104.19495 * 217.07923 * 18 16 14 20 20 C 1.54890 * 102.75092 * 37.94130 * 19 18 16 21 21 C 1.53870 * 110.03402 * 294.36572 * 16 14 13 22 22 H 1.09004 * 110.03306 * 238.66956 * 21 16 14 23 23 C 1.53002 * 110.03298 * 0.04726 * 21 16 14 24 24 C 1.53004 * 109.47010 * 184.40955 * 23 21 16 25 25 H 1.08997 * 109.46815 * 63.96017 * 1 2 3 26 26 H 1.09001 * 109.46745 * 183.95681 * 1 2 3 27 27 H 1.09001 * 109.46822 * 303.95314 * 1 2 3 28 28 H 1.08996 * 109.47437 * 239.99730 * 2 1 3 29 29 H 1.09001 * 109.46673 * 119.99580 * 2 1 3 30 30 H 0.96999 * 119.99479 * 180.02562 * 8 7 5 31 31 H 0.96993 * 119.99844 * 86.30461 * 13 3 2 32 32 H 1.09002 * 109.46655 * 181.39012 * 17 16 14 33 33 H 1.08997 * 109.47361 * 301.39613 * 17 16 14 34 34 H 1.09008 * 109.46923 * 61.39632 * 17 16 14 35 35 H 1.09003 * 110.48818 * 335.75671 * 18 16 14 36 36 H 1.08993 * 110.49144 * 98.40083 * 18 16 14 37 37 H 1.09002 * 110.75888 * 156.25548 * 19 18 16 38 38 H 1.09001 * 110.75827 * 279.44541 * 19 18 16 39 39 H 1.08995 * 110.48836 * 203.38089 * 20 19 18 40 40 H 1.09004 * 110.48855 * 80.73381 * 20 19 18 41 41 H 1.09001 * 109.47014 * 64.41278 * 23 21 16 42 42 H 1.09000 * 109.47673 * 304.41199 * 23 21 16 43 43 H 1.08999 * 109.46769 * 299.99898 * 24 23 21 44 44 H 1.09004 * 109.46637 * 180.02562 * 24 23 21 45 45 H 1.08994 * 109.47253 * 60.00584 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5840 1.9891 -0.8255 5 6 3.5382 1.4456 -0.1622 6 1 4.1673 1.8075 0.6377 7 6 4.1061 0.9865 -1.3317 8 7 3.3406 0.6560 -2.3488 9 14 5.9626 0.8338 -1.4716 10 1 6.3710 -0.5557 -1.1440 11 1 6.3829 1.1596 -2.8581 12 1 6.6096 1.7765 -0.5239 13 7 1.6847 2.0861 1.2672 14 6 0.5467 2.8020 1.3635 15 8 -0.2348 2.8262 0.4365 16 6 0.2455 3.5721 2.6234 17 6 -1.0027 4.4342 2.4243 18 6 1.4478 4.4622 3.0001 19 6 1.4925 4.4055 4.5472 20 6 1.1140 2.9337 4.8465 21 6 0.0332 2.6003 3.7973 22 1 -0.9594 2.7421 4.2247 23 6 0.1956 1.1563 3.3182 24 6 -0.1255 0.1985 4.4674 25 1 -0.3633 0.4511 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8525 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.7400 0.3327 -3.1714 31 1 2.2683 1.9971 2.0367 32 1 -1.1981 5.0056 3.3318 33 1 -0.8425 5.1186 1.5913 34 1 -1.8569 3.7924 2.2082 35 1 2.3681 4.0595 2.5769 36 1 1.2864 5.4852 2.6604 37 1 2.4946 4.6287 4.9133 38 1 0.7633 5.0904 4.9801 39 1 0.7089 2.8412 5.8541 40 1 1.9802 2.2840 4.7214 41 1 1.2219 0.9963 2.9879 42 1 -0.4863 0.9698 2.4886 43 1 0.5565 0.3850 5.2970 44 1 -0.0094 -0.8302 4.1261 45 1 -1.1518 0.3584 4.7977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879484521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -67.796636 kcal Electronic energy + Delta-G solvation = -22609.015835 eV Core-core repulsion = 19625.205367 eV Total energy + Delta-G solvation = -2983.810468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42773 -37.30686 -35.11003 -33.17264 -32.24163 -31.11874 -30.67851 -27.51912 -27.14997 -25.29028 -23.07091 -22.46731 -21.33743 -20.31925 -19.47014 -18.75515 -16.69056 -15.75436 -15.55607 -15.14655 -14.68653 -14.45782 -14.04897 -13.80032 -13.34351 -13.06539 -12.75279 -12.50538 -12.40501 -12.19227 -11.90140 -11.67192 -11.43530 -11.35493 -11.29432 -10.98409 -10.93602 -10.90144 -10.76395 -10.47501 -10.44865 -10.39048 -10.25664 -10.18251 -9.96098 -9.53287 -9.07020 -8.72433 -8.43659 -7.69396 -6.10394 -4.16861 3.25373 3.32824 3.34495 3.50015 4.15653 4.40194 4.67722 4.71737 4.85834 5.22200 5.24063 5.31994 5.39394 5.45065 5.55301 5.64765 5.68961 5.72653 5.77090 5.91698 5.93028 6.05773 6.10360 6.13795 6.22406 6.27368 6.31450 6.35431 6.37618 6.44035 6.49681 6.55247 6.60053 6.69838 7.05239 7.22084 7.37245 7.50984 7.65465 7.75535 7.94470 8.15095 8.76975 8.84805 9.24935 9.50472 10.97041 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.006474 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.973827 B = 4323.830220 C = 4588.964760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.519 3.481 15 O -0.552 6.552 16 C -0.086 4.086 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.076 4.076 22 H 0.075 0.925 23 C -0.140 4.140 24 C -0.147 4.147 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.386 0.614 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 3.691 14.264 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.165 3.835 4 H 0.074 0.926 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.304 3.696 15 O -0.431 6.431 16 C -0.090 4.090 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.095 4.095 22 H 0.094 0.906 23 C -0.177 4.177 24 C -0.205 4.205 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.221 0.779 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.179 3.636 13.356 14.779 hybrid contribution 1.305 -0.226 0.146 1.332 sum -3.874 3.410 13.502 14.455 Atomic orbital electron populations 1.21920 0.98387 0.98249 1.01636 1.21819 0.92756 1.00014 1.01145 1.18767 0.94408 0.89167 0.81135 0.92570 1.21254 0.90987 1.43570 1.01367 0.92266 1.24890 0.98215 0.95191 0.95302 1.69971 1.34965 1.43467 1.03448 0.86524 0.85321 0.78354 0.77450 1.20631 1.21175 1.19881 1.46646 1.21990 1.51249 1.15814 1.20102 0.82038 0.79460 0.87993 1.90643 1.47585 1.64467 1.40397 1.21569 0.97226 0.95930 0.94235 1.21618 0.96186 0.99015 1.00857 1.22520 0.97567 0.99564 0.95739 1.22484 1.01130 0.96688 0.95709 1.22482 0.98565 0.96396 0.98241 1.21835 0.99468 0.94341 0.93834 0.90642 1.22228 1.03747 0.93354 0.98366 1.21759 1.00819 0.99403 0.98511 0.93436 0.95780 0.93144 0.90048 0.94915 0.92681 0.77938 0.92812 0.92283 0.92178 0.90499 0.91263 0.91547 0.91684 0.91798 0.91188 0.90122 0.90939 0.92917 0.92877 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.91 37.16 0.33 -2.83 16 2 C -0.12 -2.80 5.50 -26.72 -0.15 -2.94 16 3 C 0.27 6.62 2.06 -69.08 -0.14 6.48 16 4 H 0.06 1.65 7.38 -51.93 -0.38 1.27 16 5 C -0.53 -14.01 8.69 -34.44 -0.30 -14.31 16 6 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 7 C 0.07 1.82 5.20 -17.82 -0.09 1.72 16 8 N -0.88 -24.97 11.97 55.43 0.66 -24.30 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.30 2.97 -54.93 -0.16 -14.47 16 14 C 0.52 10.14 3.89 -10.98 -0.04 10.10 16 15 O -0.55 -12.94 13.87 5.56 0.08 -12.86 16 16 C -0.09 -1.28 0.80 -154.54 -0.12 -1.40 16 17 C -0.12 -1.68 7.45 37.16 0.28 -1.40 16 18 C -0.12 -1.53 5.79 -25.08 -0.15 -1.68 16 19 C -0.12 -1.28 6.91 -24.74 -0.17 -1.46 16 20 C -0.12 -1.28 5.50 -25.07 -0.14 -1.41 16 21 C -0.08 -0.96 2.59 -89.50 -0.23 -1.20 16 22 H 0.08 0.90 7.67 -51.93 -0.40 0.51 16 23 C -0.14 -1.98 3.92 -26.73 -0.10 -2.08 16 24 C -0.15 -1.74 9.76 37.16 0.36 -1.38 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.06 3.42 -51.93 -0.18 0.88 16 28 H 0.08 2.15 6.60 -51.93 -0.34 1.80 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 7.01 6.46 -40.82 -0.26 6.75 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.89 8.08 -51.92 -0.42 0.47 16 35 H 0.08 1.12 6.87 -51.93 -0.36 0.76 16 36 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 41 H 0.08 1.24 5.20 -51.93 -0.27 0.97 16 42 H 0.07 1.22 4.87 -51.93 -0.25 0.96 16 43 H 0.05 0.55 7.49 -51.93 -0.39 0.16 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -29.05 333.83 -7.92 -36.97 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.84 Total: 7.76 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.67 Total: -13.79 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.50 Total: -38.77 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.05 -7.92 -36.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879484521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.830 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds