Wall clock time and date at job start Mon Mar 30 2020 00:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00436 * 2 1 4 4 C 1.53004 * 109.47100 * 124.99643 * 3 2 1 5 5 C 1.53003 * 109.46829 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47136 * 304.99791 * 5 4 3 7 7 N 1.46904 * 109.47405 * 65.00255 * 5 4 3 8 8 C 1.46900 * 110.99761 * 58.54410 * 7 5 4 9 9 C 1.53007 * 109.46694 * 185.46442 * 8 7 5 10 10 C 1.53008 * 109.46634 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46827 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00113 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00145 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00226 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47177 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.47342 * 300.00223 * 15 13 11 18 18 H 1.48503 * 109.47188 * 59.99697 * 15 13 11 19 19 C 1.53005 * 109.46926 * 185.00086 * 5 4 3 20 20 H 1.08992 * 110.27575 * 68.73933 * 19 5 4 21 21 C 1.54948 * 110.30890 * 190.93967 * 19 5 4 22 22 C 1.55302 * 100.94151 * 155.35831 * 21 19 5 23 23 C 1.54384 * 102.25409 * 325.86447 * 22 21 19 24 24 O 1.43235 * 107.58783 * 21.35689 * 23 22 21 25 25 H 1.07996 * 120.00238 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99815 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99815 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.46774 * 4.99811 * 3 2 1 29 29 H 1.08996 * 109.47246 * 245.00010 * 3 2 1 30 30 H 1.08998 * 109.47244 * 60.00410 * 4 3 2 31 31 H 1.09000 * 109.47187 * 299.99817 * 4 3 2 32 32 H 1.00897 * 111.00272 * 182.50299 * 7 5 4 33 33 H 1.09001 * 109.46818 * 65.47162 * 8 7 5 34 34 H 1.08997 * 109.47557 * 305.46474 * 8 7 5 35 35 H 1.09001 * 109.46900 * 60.00770 * 9 8 7 36 36 H 1.08997 * 109.47145 * 300.00284 * 9 8 7 37 37 H 1.08991 * 109.47087 * 60.00477 * 10 9 8 38 38 H 1.08997 * 109.47280 * 299.99826 * 10 9 8 39 39 H 0.97007 * 119.99681 * 0.02562 * 14 13 11 40 40 H 1.09001 * 111.12449 * 273.28016 * 21 19 5 41 41 H 1.09001 * 111.12468 * 37.43918 * 21 19 5 42 42 H 1.09001 * 110.84664 * 207.67288 * 22 21 19 43 43 H 1.08998 * 111.02273 * 84.13815 * 22 21 19 44 44 H 1.08996 * 109.83140 * 261.84274 * 23 22 21 45 45 H 1.09000 * 109.90158 * 140.91123 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7997 2.6583 1.1820 6 1 4.2857 2.7975 0.2164 7 7 2.8630 3.7640 1.4228 8 6 2.1626 3.5914 2.7025 9 6 1.1022 4.6839 2.8548 10 6 0.3732 4.5045 4.1880 11 6 -0.6717 5.5801 4.3379 12 1 -0.8029 6.3175 3.5598 13 6 -1.4601 5.6227 5.4681 14 7 -1.3007 4.7244 6.4153 15 14 -2.7557 6.9554 5.6535 16 1 -3.4633 6.7814 6.9475 17 1 -2.1026 8.2887 5.6212 18 1 -3.7318 6.8554 4.5388 19 6 4.8577 2.6363 2.2871 20 1 5.6452 1.9238 2.0419 21 6 5.4540 4.0522 2.4888 22 6 5.9433 3.9591 3.9598 23 6 4.8801 3.0418 4.6014 24 8 4.2555 2.3000 3.5472 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9313 30 1 3.7399 0.5065 1.0922 31 1 2.4772 1.2356 2.1131 32 1 3.3372 4.6539 1.3872 33 1 2.8787 3.6635 3.5211 34 1 1.6823 2.6132 2.7249 35 1 0.3861 4.6118 2.0362 36 1 1.5825 5.6621 2.8325 37 1 1.0894 4.5768 5.0064 38 1 -0.1071 3.5263 4.2108 39 1 -0.6281 4.0320 6.3189 40 1 6.2870 4.2282 1.8081 41 1 4.6888 4.8203 2.3772 42 1 5.9434 4.9417 4.4315 43 1 6.9323 3.5042 4.0149 44 1 4.1355 3.6454 5.1202 45 1 5.3557 2.3572 5.3037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883185549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:15 Heat of formation + Delta-G solvation = -47.309213 kcal Electronic energy + Delta-G solvation = -21423.880839 eV Core-core repulsion = 18440.958773 eV Total energy + Delta-G solvation = -2982.922067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21298 -36.89346 -34.97670 -33.84772 -32.20816 -31.89045 -29.72318 -29.01864 -25.93544 -24.83262 -22.84286 -22.18809 -21.51537 -20.42601 -19.63602 -19.47532 -17.03610 -16.60567 -16.47429 -15.84894 -15.08909 -14.38536 -14.28702 -13.98613 -13.73982 -13.66562 -13.32805 -13.14787 -12.80519 -12.50755 -12.20786 -11.90004 -11.73710 -11.47056 -11.41766 -11.30119 -10.96301 -10.82009 -10.70887 -10.55984 -10.51166 -10.26098 -10.06069 -9.70453 -9.59747 -9.57039 -9.17113 -8.43546 -8.24011 -7.88224 -6.27538 -3.95448 2.41587 3.48070 3.50672 3.69203 3.76065 4.33908 4.42917 4.60549 4.64959 4.76950 4.95993 5.09111 5.13670 5.14221 5.20234 5.37259 5.49573 5.51582 5.57741 5.62652 5.69509 5.71685 5.77174 5.85643 5.90026 5.98260 6.01766 6.05861 6.20044 6.39056 6.45894 6.56677 6.74958 6.77349 6.86677 6.94151 7.03126 7.12167 7.41318 7.57254 7.65455 7.75138 8.33999 8.56403 8.98481 9.76765 11.13111 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.005390 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.424567 B = 5193.517849 C = 6589.300680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.087 4.087 4 C -0.104 4.104 5 C 0.090 3.910 6 H 0.087 0.913 7 N -0.679 5.679 8 C 0.048 3.952 9 C -0.100 4.100 10 C 0.013 3.987 11 C -0.598 4.598 12 H 0.047 0.953 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.068 2.932 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.288 1.288 19 C 0.048 3.952 20 H 0.066 0.934 21 C -0.158 4.158 22 C -0.153 4.153 23 C 0.046 3.954 24 O -0.365 6.365 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.333 0.667 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.138 -5.848 -10.786 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C -0.124 4.124 4 C -0.141 4.141 5 C -0.021 4.021 6 H 0.105 0.895 7 N -0.310 5.310 8 C -0.080 4.080 9 C -0.138 4.138 10 C -0.025 4.025 11 C -0.637 4.637 12 H 0.065 0.935 13 C -0.191 4.191 14 N -0.552 5.552 15 Si 0.896 3.104 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.215 1.215 19 C -0.011 4.011 20 H 0.084 0.916 21 C -0.196 4.196 22 C -0.191 4.191 23 C -0.030 4.030 24 O -0.285 6.285 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.270 -5.692 -10.117 17.631 hybrid contribution 2.192 -0.255 -0.351 2.234 sum 15.462 -5.947 -10.468 19.596 Atomic orbital electron populations 1.23877 0.96117 1.01789 1.01367 1.22997 0.96079 0.98536 0.99763 1.20689 0.98648 0.95424 0.97685 1.21515 0.97871 0.95034 0.99728 1.21783 0.91268 0.93248 0.95765 0.89521 1.60713 1.30072 1.03834 1.36386 1.22446 0.96337 1.00280 0.88929 1.21497 0.96447 0.96033 0.99831 1.19142 0.94869 0.96809 0.91683 1.22085 1.20511 1.14447 1.06645 0.93497 1.25831 0.99807 1.00723 0.92703 1.70773 1.34665 1.15356 1.34446 0.83566 0.75769 0.74951 0.76078 1.20826 1.21554 1.21480 1.23847 0.95870 0.94810 0.86597 0.91612 1.23376 1.01335 0.98066 0.96786 1.23068 0.99212 1.01030 0.95744 1.23093 0.95005 0.94170 0.90777 1.88543 1.59452 1.65657 1.14811 0.88990 0.88327 0.88118 0.89976 0.91916 0.92394 0.90355 0.84749 0.93123 0.91246 0.93004 0.94129 0.97956 0.97635 0.92136 0.90098 0.89892 0.90050 0.90869 0.90765 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 29.02 0.42 -2.03 16 2 C -0.16 -1.91 9.52 -36.02 -0.34 -2.25 16 3 C -0.09 -1.09 5.55 -27.88 -0.15 -1.25 16 4 C -0.10 -1.32 4.14 -26.73 -0.11 -1.44 16 5 C 0.09 1.08 2.75 -67.71 -0.19 0.90 16 6 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 7 N -0.68 -9.72 5.69 -106.72 -0.61 -10.33 16 8 C 0.05 0.86 4.25 -3.82 -0.02 0.84 16 9 C -0.10 -2.18 5.46 -26.72 -0.15 -2.32 16 10 C 0.01 0.34 4.28 -27.88 -0.12 0.22 16 11 C -0.60 -17.76 9.11 -34.44 -0.31 -18.07 16 12 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 13 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -28.98 13.65 55.43 0.76 -28.22 16 15 Si 1.07 26.08 29.90 -169.99 -5.08 21.00 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.05 0.56 3.22 -25.70 -0.08 0.48 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.16 -1.61 6.16 -24.48 -0.15 -1.76 16 22 C -0.15 -1.55 7.02 -24.78 -0.17 -1.72 16 23 C 0.05 0.59 7.05 37.88 0.27 0.85 16 24 O -0.37 -5.27 7.64 -35.23 -0.27 -5.54 16 25 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 27 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.08 1.21 7.40 -51.92 -0.38 0.82 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.22 5.60 -51.93 -0.29 0.93 16 32 H 0.33 4.44 6.56 -39.29 -0.26 4.18 16 33 H 0.05 0.92 4.14 -51.93 -0.22 0.70 16 34 H 0.07 1.35 5.88 -51.93 -0.31 1.05 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 38 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 39 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.94 5.69 -51.93 -0.30 0.64 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.07 7.53 -51.93 -0.39 0.68 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -31.80 345.66 -9.16 -40.96 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.95 Total: 4.20 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -1.21 Total: -27.28 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.15 Total: -38.55 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.27 Total: -5.54 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.80 -9.16 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883185549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.346 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds