Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 C 1.53003 * 109.47236 * 184.94167 * 3 2 1 5 5 H 1.09011 * 109.99336 * 306.55501 * 4 3 2 6 6 C 1.54320 * 109.88522 * 67.64993 * 4 3 2 7 7 C 1.55153 * 102.94035 * 141.61219 * 6 4 3 8 8 C 1.55123 * 101.48712 * 324.33302 * 7 6 4 9 9 N 1.47019 * 109.88247 * 185.46222 * 4 3 2 10 10 C 1.34776 * 125.64901 * 61.60388 * 9 4 3 11 11 O 1.21281 * 120.00445 * 355.05987 * 10 9 4 12 12 C 1.50698 * 119.99999 * 175.06037 * 10 9 4 13 13 C 1.52998 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46921 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46747 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99724 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00222 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47318 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47156 * 300.00063 * 20 18 16 23 23 H 1.48502 * 109.47112 * 59.99799 * 20 18 16 24 24 H 1.08992 * 109.47439 * 59.99888 * 1 2 3 25 25 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47176 * 299.99699 * 1 2 3 27 27 H 1.08994 * 109.47296 * 240.00312 * 2 1 3 28 28 H 1.09004 * 109.47610 * 119.99737 * 2 1 3 29 29 H 1.08996 * 109.47194 * 64.93949 * 3 2 1 30 30 H 1.09005 * 109.47224 * 304.93635 * 3 2 1 31 31 H 1.09004 * 110.72088 * 259.97535 * 6 4 3 32 32 H 1.08999 * 110.71700 * 23.07222 * 6 4 3 33 33 H 1.09005 * 111.00239 * 82.57520 * 7 6 4 34 34 H 1.09003 * 111.00025 * 206.38428 * 7 6 4 35 35 H 1.09003 * 110.49984 * 278.45124 * 8 7 6 36 36 H 1.09007 * 110.34534 * 156.06175 * 8 7 6 37 37 H 1.08997 * 109.47464 * 59.99753 * 12 10 9 38 38 H 1.09008 * 109.47315 * 299.99754 * 12 10 9 39 39 H 1.09003 * 109.47203 * 60.00468 * 13 12 10 40 40 H 1.08995 * 109.47130 * 300.00046 * 13 12 10 41 41 H 1.09003 * 109.46421 * 60.00225 * 14 13 12 42 42 H 1.08995 * 109.47262 * 300.00200 * 14 13 12 43 43 H 1.08992 * 109.47066 * 60.00481 * 15 14 13 44 44 H 1.08995 * 109.47318 * 300.00168 * 15 14 13 45 45 H 0.96994 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5649 1.4444 -0.1243 5 1 4.0025 0.8113 0.6478 6 6 3.9784 0.9320 -1.5199 7 6 5.1849 1.8388 -1.8796 8 6 4.7554 3.1891 -1.2482 9 7 4.0755 2.8169 0.0058 10 6 3.9395 3.6062 1.0897 11 8 3.2775 3.2308 2.0341 12 6 4.6099 4.9553 1.1284 13 6 4.2977 5.6420 2.4594 14 6 4.9789 7.0115 2.4989 15 6 4.6661 7.6985 3.8298 16 6 5.3366 9.0476 3.8684 17 1 5.9264 9.3818 3.0277 18 6 5.1962 9.8557 4.9767 19 7 4.4767 9.4494 5.9999 20 14 6.0278 11.5277 5.0249 21 1 5.7242 12.1946 6.3165 22 1 7.4966 11.3540 4.8913 23 1 5.5244 12.3634 3.9053 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7506 1.9302 0.9309 30 1 1.6062 1.9813 -0.8425 31 1 4.2826 -0.1137 -1.4723 32 1 3.1666 1.0638 -2.2352 33 1 6.1030 1.4658 -1.4256 34 1 5.2954 1.9316 -2.9600 35 1 4.0691 3.7184 -1.9092 36 1 5.6303 3.8041 -1.0373 37 1 4.2390 5.5690 0.3075 38 1 5.6880 4.8283 1.0288 39 1 4.6684 5.0285 3.2806 40 1 3.2197 5.7691 2.5587 41 1 4.6086 7.6252 1.6778 42 1 6.0569 6.8841 2.3999 43 1 5.0361 7.0849 4.6511 44 1 3.5882 7.8259 3.9284 45 1 4.3782 10.0178 6.7796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120713323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = -79.403711 kcal Electronic energy + Delta-G solvation = -20283.370857 eV Core-core repulsion = 17299.057069 eV Total energy + Delta-G solvation = -2984.313788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32432 -37.78947 -35.01094 -34.77213 -32.61681 -31.76976 -30.25884 -29.32805 -25.94982 -25.66893 -23.40288 -22.13194 -21.80935 -20.67338 -19.93664 -18.83852 -17.01281 -16.48157 -16.12194 -15.53676 -15.33718 -14.82162 -14.40018 -14.06251 -13.88004 -13.71265 -13.27290 -13.13176 -12.81877 -12.55140 -12.29661 -12.12088 -11.81103 -11.65865 -11.56887 -11.41963 -11.23741 -11.18972 -11.00889 -10.93394 -10.64417 -10.50859 -10.48242 -10.36479 -9.65519 -9.57530 -9.18121 -8.95900 -8.69468 -8.27845 -5.92720 -3.95283 2.76549 2.92687 3.36863 3.41117 3.43423 4.20983 4.25477 4.50876 4.52113 4.72752 4.83797 4.90032 4.94210 5.05717 5.10722 5.28281 5.33740 5.36650 5.41151 5.42856 5.44920 5.52411 5.60307 5.61828 5.66331 5.72139 5.84164 5.89518 5.97729 6.10069 6.14943 6.18298 6.32036 6.42071 6.59151 6.87943 7.05506 7.23450 7.50775 7.76674 7.93370 8.08943 8.29239 8.50603 9.12293 9.68120 11.18630 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.002958 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.422328 B = 9462.635625 C =10163.088178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.137 3.863 5 H 0.072 0.928 6 C -0.128 4.128 7 C -0.134 4.134 8 C 0.099 3.901 9 N -0.624 5.624 10 C 0.528 3.472 11 O -0.532 6.532 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -19.605 -19.053 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.171 4.171 4 C 0.034 3.966 5 H 0.091 0.909 6 C -0.166 4.166 7 C -0.172 4.172 8 C -0.024 4.024 9 N -0.360 5.360 10 C 0.318 3.682 11 O -0.408 6.408 12 C -0.174 4.174 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.049 -19.683 -18.269 26.933 hybrid contribution 0.466 0.968 0.009 1.075 sum -1.583 -18.715 -18.261 26.195 Atomic orbital electron populations 1.21756 0.95789 1.01399 1.01973 1.21471 0.96003 0.96498 1.01813 1.22019 0.94312 0.97189 1.03586 1.21568 0.94401 0.83426 0.97242 0.90949 1.22736 0.98231 0.99788 0.95825 1.22818 0.98415 0.94819 1.01171 1.22362 0.97108 0.97358 0.85619 1.48702 1.57324 1.15026 1.14977 1.20792 0.80455 0.86440 0.80503 1.90688 1.40076 1.74495 1.35495 1.21783 1.01170 0.92357 1.02073 1.21460 1.01631 0.97008 0.94024 1.21645 0.98634 0.93448 1.01000 1.19089 0.96947 0.94633 0.91016 1.21253 1.31068 1.01853 1.01722 0.92819 1.25042 0.95482 0.98271 0.95771 1.69966 1.39998 1.37373 1.06166 0.86671 0.79939 0.84300 0.77142 1.21322 1.20292 1.20289 0.92893 0.92864 0.92557 0.92124 0.91986 0.90016 0.92084 0.90240 0.90441 0.90505 0.89879 0.91344 0.90233 0.89379 0.89292 0.91826 0.91825 0.93521 0.93517 0.96600 0.96601 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.15 0.37 -0.86 16 2 C -0.12 -1.01 5.85 -26.73 -0.16 -1.17 16 3 C -0.13 -1.40 4.69 -26.73 -0.13 -1.52 16 4 C 0.14 1.38 2.92 -66.95 -0.20 1.19 16 5 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 6 C -0.13 -0.85 5.55 -24.90 -0.14 -0.99 16 7 C -0.13 -0.81 7.10 -24.47 -0.17 -0.99 16 8 C 0.10 0.79 6.75 -2.42 -0.02 0.78 16 9 N -0.62 -7.23 3.06 -162.88 -0.50 -7.73 16 10 C 0.53 7.98 7.66 -10.99 -0.08 7.90 16 11 O -0.53 -10.09 14.77 5.56 0.08 -10.00 16 12 C -0.13 -1.91 4.63 -27.89 -0.13 -2.04 16 13 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.85 13.29 55.43 0.74 -27.12 16 20 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.42 7.36 -51.93 -0.38 0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 30 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.47 7.76 -51.93 -0.40 0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.59 7.48 -51.92 -0.39 0.20 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.12 7.96 -51.92 -0.41 0.70 16 39 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -33.56 357.58 -9.41 -42.97 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -8.64 Total: -4.82 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.46 Total: -15.79 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.24 Total: -34.85 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.56 -9.41 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120713323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.433 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds