Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 C 1.53003 * 109.47236 * 184.94167 * 3 2 1 5 5 H 1.09011 * 109.99336 * 306.55501 * 4 3 2 6 6 C 1.54320 * 109.88522 * 67.64993 * 4 3 2 7 7 C 1.55153 * 102.94035 * 141.61219 * 6 4 3 8 8 C 1.55123 * 101.48712 * 324.33302 * 7 6 4 9 9 N 1.47019 * 109.88247 * 185.46222 * 4 3 2 10 10 C 1.34776 * 125.64901 * 61.60388 * 9 4 3 11 11 O 1.21281 * 120.00445 * 355.05987 * 10 9 4 12 12 C 1.50698 * 119.99999 * 175.06037 * 10 9 4 13 13 C 1.52998 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47293 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46921 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46747 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99724 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00222 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47318 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47156 * 300.00063 * 20 18 16 23 23 H 1.48502 * 109.47112 * 59.99799 * 20 18 16 24 24 H 1.08992 * 109.47439 * 59.99888 * 1 2 3 25 25 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47176 * 299.99699 * 1 2 3 27 27 H 1.08994 * 109.47296 * 240.00312 * 2 1 3 28 28 H 1.09004 * 109.47610 * 119.99737 * 2 1 3 29 29 H 1.08996 * 109.47194 * 64.93949 * 3 2 1 30 30 H 1.09005 * 109.47224 * 304.93635 * 3 2 1 31 31 H 1.09004 * 110.72088 * 259.97535 * 6 4 3 32 32 H 1.08999 * 110.71700 * 23.07222 * 6 4 3 33 33 H 1.09005 * 111.00239 * 82.57520 * 7 6 4 34 34 H 1.09003 * 111.00025 * 206.38428 * 7 6 4 35 35 H 1.09003 * 110.49984 * 278.45124 * 8 7 6 36 36 H 1.09007 * 110.34534 * 156.06175 * 8 7 6 37 37 H 1.08997 * 109.47464 * 59.99753 * 12 10 9 38 38 H 1.09008 * 109.47315 * 299.99754 * 12 10 9 39 39 H 1.09003 * 109.47203 * 60.00468 * 13 12 10 40 40 H 1.08995 * 109.47130 * 300.00046 * 13 12 10 41 41 H 1.09003 * 109.46421 * 60.00225 * 14 13 12 42 42 H 1.08995 * 109.47262 * 300.00200 * 14 13 12 43 43 H 1.08992 * 109.47066 * 60.00481 * 15 14 13 44 44 H 1.08995 * 109.47318 * 300.00168 * 15 14 13 45 45 H 0.96994 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5649 1.4444 -0.1243 5 1 4.0025 0.8113 0.6478 6 6 3.9784 0.9320 -1.5199 7 6 5.1849 1.8388 -1.8796 8 6 4.7554 3.1891 -1.2482 9 7 4.0755 2.8169 0.0058 10 6 3.9395 3.6062 1.0897 11 8 3.2775 3.2308 2.0341 12 6 4.6099 4.9553 1.1284 13 6 4.2977 5.6420 2.4594 14 6 4.9789 7.0115 2.4989 15 6 4.6661 7.6985 3.8298 16 6 5.3366 9.0476 3.8684 17 1 5.9264 9.3818 3.0277 18 6 5.1962 9.8557 4.9767 19 7 4.4767 9.4494 5.9999 20 14 6.0278 11.5277 5.0249 21 1 5.7242 12.1946 6.3165 22 1 7.4966 11.3540 4.8913 23 1 5.5244 12.3634 3.9053 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7506 1.9302 0.9309 30 1 1.6062 1.9813 -0.8425 31 1 4.2826 -0.1137 -1.4723 32 1 3.1666 1.0638 -2.2352 33 1 6.1030 1.4658 -1.4256 34 1 5.2954 1.9316 -2.9600 35 1 4.0691 3.7184 -1.9092 36 1 5.6303 3.8041 -1.0373 37 1 4.2390 5.5690 0.3075 38 1 5.6880 4.8283 1.0288 39 1 4.6684 5.0285 3.2806 40 1 3.2197 5.7691 2.5587 41 1 4.6086 7.6252 1.6778 42 1 6.0569 6.8841 2.3999 43 1 5.0361 7.0849 4.6511 44 1 3.5882 7.8259 3.9284 45 1 4.3782 10.0178 6.7796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120713323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = -98.528302 kcal Electronic energy + Delta-G solvation = -20284.200162 eV Core-core repulsion = 17299.057069 eV Total energy + Delta-G solvation = -2985.143093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28640 -38.80157 -36.62857 -35.69823 -34.60197 -32.72607 -31.42033 -30.57677 -27.52093 -26.59033 -24.80256 -23.24481 -22.66558 -21.83339 -21.35026 -19.82533 -18.43860 -17.98202 -17.35223 -16.76116 -16.50008 -16.11968 -15.86917 -15.27607 -14.65842 -14.59357 -14.40212 -14.18544 -13.93275 -13.76140 -13.58418 -13.45345 -13.26232 -12.88877 -12.79680 -12.53825 -12.37975 -12.19107 -12.16307 -12.02520 -11.95823 -11.83930 -11.55733 -11.41417 -11.39704 -11.34813 -11.14430 -10.67117 -10.55152 -9.63083 -8.19054 -6.31707 1.39833 1.44249 1.52115 1.62261 2.00461 2.41757 3.13413 3.47504 3.68030 3.83255 3.90284 4.01206 4.09159 4.13491 4.17436 4.24806 4.39576 4.51345 4.56513 4.60683 4.64180 4.76121 4.79836 4.84205 4.90204 4.91229 4.94454 5.00990 5.04776 5.14450 5.15956 5.21648 5.30054 5.33661 5.34636 5.37688 5.41465 5.54720 5.56507 5.76214 5.86657 6.24278 6.52862 6.86460 7.18687 7.37952 8.93183 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.002958 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.422328 B = 9462.635625 C =10163.088178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.128 3.872 5 H 0.055 0.945 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.087 3.913 9 N -0.621 5.621 10 C 0.520 3.480 11 O -0.586 6.586 12 C -0.122 4.122 13 C -0.095 4.095 14 C -0.094 4.094 15 C 0.019 3.981 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.264 1.264 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.061 0.939 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -19.600 -22.482 29.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.025 3.975 5 H 0.073 0.927 6 C -0.156 4.156 7 C -0.163 4.163 8 C -0.035 4.035 9 N -0.354 5.354 10 C 0.311 3.689 11 O -0.466 6.466 12 C -0.162 4.162 13 C -0.133 4.133 14 C -0.131 4.131 15 C -0.018 4.018 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.188 1.188 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.371 -19.699 -21.765 29.358 hybrid contribution -0.087 0.915 1.084 1.421 sum -0.458 -18.784 -20.680 27.942 Atomic orbital electron populations 1.21766 0.95601 1.02169 1.01422 1.21451 0.96157 0.95099 1.02574 1.21936 0.94999 0.98271 1.01386 1.21765 0.93841 0.82590 0.99325 0.92666 1.22733 0.98950 1.00725 0.93205 1.22835 0.97879 0.92994 1.02614 1.22728 0.97563 0.99081 0.84097 1.48759 1.56388 1.15163 1.15098 1.20905 0.80137 0.87032 0.80845 1.90672 1.42528 1.75675 1.37755 1.21639 1.02755 0.91980 0.99786 1.21243 0.99809 0.95903 0.96335 1.21437 0.99756 0.94188 0.97768 1.19045 0.94630 0.94649 0.93446 1.21726 1.31344 1.02675 1.02352 0.91498 1.26117 0.96051 1.03078 0.95194 1.70132 1.41527 1.39273 1.06983 0.85417 0.79165 0.78454 0.77501 1.21048 1.18842 1.18838 0.92186 0.91413 0.94398 0.89572 0.92880 0.94388 0.91608 0.88561 0.89218 0.90416 0.87178 0.90025 0.89132 0.86854 0.86727 0.93990 0.94018 0.92052 0.92025 0.99783 0.99802 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.11 -1.86 5.85 30.59 0.18 -1.68 16 3 C -0.13 -2.72 4.69 30.60 0.14 -2.57 16 4 C 0.13 2.48 2.92 45.34 0.13 2.61 16 5 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 6 C -0.12 -1.19 5.55 31.78 0.18 -1.02 16 7 C -0.13 -1.03 7.10 32.06 0.23 -0.80 16 8 C 0.09 1.12 6.75 86.93 0.59 1.71 16 9 N -0.62 -13.73 3.06 -787.62 -2.41 -16.15 16 10 C 0.52 15.91 7.66 87.66 0.67 16.59 16 11 O -0.59 -23.71 14.77 -3.03 -0.04 -23.76 16 12 C -0.12 -3.36 4.63 29.85 0.14 -3.22 16 13 C -0.09 -3.64 4.50 30.60 0.14 -3.50 16 14 C -0.09 -3.97 5.15 30.60 0.16 -3.82 16 15 C 0.02 1.09 4.97 29.85 0.15 1.24 16 16 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 19 N -0.94 -59.97 13.29 21.45 0.28 -59.69 16 20 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 0.97 7.36 -2.39 -0.02 0.95 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 1.15 6.54 -2.39 -0.02 1.13 16 30 H 0.07 1.30 8.01 -2.38 -0.02 1.28 16 31 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.09 0.74 7.76 -2.39 -0.02 0.72 16 33 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 34 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.00 7.48 -2.38 -0.02 0.98 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.11 2.58 7.96 -2.38 -0.02 2.56 16 39 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 40 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -77.18 357.58 4.87 -72.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.91 Total: 7.90 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.11 Total: -27.89 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.13 Total: -75.83 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.18 4.87 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120713323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds