Wall clock time and date at job start Mon Mar 30 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47194 * 2 1 4 4 C 1.52997 * 109.47194 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47205 * 179.97438 * 4 3 2 6 6 C 1.37095 * 119.99949 * 269.99954 * 5 4 3 7 7 H 1.08002 * 119.99513 * 144.37335 * 6 5 4 8 8 C 1.38945 * 119.99984 * 324.37132 * 6 5 4 9 9 N 1.31411 * 119.99948 * 158.71935 * 8 6 5 10 10 Si 1.86804 * 120.00198 * 338.71557 * 8 6 5 11 11 H 1.48501 * 109.46867 * 95.37398 * 10 8 6 12 12 H 1.48498 * 109.46921 * 215.37092 * 10 8 6 13 13 H 1.48497 * 109.47115 * 335.37219 * 10 8 6 14 14 C 1.34778 * 119.99416 * 89.99986 * 5 4 3 15 15 O 1.21287 * 120.00669 * 5.00229 * 14 5 4 16 16 C 1.50697 * 119.99363 * 185.00410 * 14 5 4 17 17 H 1.09001 * 115.56931 * 314.88276 * 16 14 5 18 18 C 1.53003 * 117.50098 * 100.57164 * 16 14 5 19 19 C 1.53001 * 60.00226 * 107.48921 * 18 16 14 20 20 C 1.52991 * 117.50070 * 107.49066 * 19 18 16 21 21 C 1.53001 * 109.47241 * 64.99236 * 20 19 18 22 22 C 1.53003 * 117.50050 * 252.49334 * 19 18 16 23 23 C 1.52991 * 109.47366 * 151.84799 * 22 19 18 24 24 H 1.09000 * 109.47031 * 300.00113 * 1 2 3 25 25 H 1.08999 * 109.46488 * 60.00206 * 1 2 3 26 26 H 1.08995 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47588 * 239.99841 * 2 1 3 28 28 H 1.09007 * 109.47274 * 119.99625 * 2 1 3 29 29 H 1.09000 * 109.47224 * 60.00005 * 3 2 1 30 30 H 1.09000 * 109.46542 * 299.99612 * 3 2 1 31 31 H 1.09004 * 109.47292 * 59.99470 * 4 3 2 32 32 H 1.09002 * 109.47171 * 300.00071 * 4 3 2 33 33 H 0.96999 * 120.00515 * 180.02562 * 9 8 6 34 34 H 1.09004 * 117.49566 * 359.97438 * 18 16 14 35 35 H 1.08995 * 117.52203 * 214.97141 * 18 16 14 36 36 H 1.09006 * 109.47474 * 304.99568 * 20 19 18 37 37 H 1.08995 * 109.47733 * 184.99515 * 20 19 18 38 38 H 1.08997 * 109.47609 * 175.00206 * 21 20 19 39 39 H 1.09004 * 109.47396 * 295.00401 * 21 20 19 40 40 H 1.09001 * 109.46843 * 54.99823 * 21 20 19 41 41 H 1.08998 * 109.46706 * 271.85027 * 22 19 18 42 42 H 1.08997 * 109.47049 * 31.84915 * 22 19 18 43 43 H 1.08998 * 109.47718 * 185.08811 * 23 22 19 44 44 H 1.09002 * 109.47355 * 305.09274 * 23 22 19 45 45 H 1.09005 * 109.47054 * 65.09310 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2863 3.4697 -1.1888 7 1 4.0821 4.5266 -1.2765 8 6 4.7802 2.7646 -2.2795 9 7 4.6137 3.2342 -3.4955 10 14 5.6809 1.1492 -2.0173 11 1 4.7296 0.0203 -2.1782 12 1 6.7722 1.0231 -3.0165 13 1 6.2568 1.1200 -0.6489 14 6 4.2834 3.4594 1.1657 15 8 4.1692 2.8607 2.2143 16 6 4.6770 4.9140 1.1676 17 1 5.4425 5.1952 0.4444 18 6 3.5854 5.9409 1.4758 19 6 4.6722 5.6455 2.5115 20 6 5.7423 6.7153 2.7374 21 6 5.0932 7.9699 3.3252 22 6 4.2681 4.8444 3.7508 23 6 5.4786 4.0686 4.2737 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 4.9581 2.7419 -4.2570 34 1 2.5825 5.5642 1.6769 35 1 3.6326 6.8976 0.9557 36 1 6.2154 6.9624 1.7869 37 1 6.4942 6.3368 3.4298 38 1 5.8661 8.6989 3.5687 39 1 4.4058 8.3990 2.5961 40 1 4.5451 7.7056 4.2296 41 1 3.9117 5.5257 4.5234 42 1 3.4741 4.1452 3.4885 43 1 5.1706 3.4287 5.1006 44 1 5.8902 3.4544 3.4728 45 1 6.2376 4.7700 4.6204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181882615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:56 Heat of formation + Delta-G solvation = -27.349136 kcal Electronic energy + Delta-G solvation = -21835.665632 eV Core-core repulsion = 18853.609099 eV Total energy + Delta-G solvation = -2982.056533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62947 -37.43614 -35.29258 -34.00680 -31.92938 -31.63445 -31.07231 -28.68708 -25.00109 -24.35507 -23.68437 -22.97456 -21.90448 -20.71357 -18.94828 -18.15821 -16.57346 -16.29093 -15.52061 -14.84681 -14.58459 -14.56335 -14.03023 -13.89813 -13.39068 -13.05202 -12.97173 -12.71674 -12.63189 -12.23851 -12.00638 -11.88593 -11.69338 -11.42717 -11.39689 -11.36463 -11.05707 -10.85441 -10.67975 -10.58822 -10.47832 -10.36951 -10.11953 -10.02639 -9.71880 -9.32143 -9.14135 -9.04559 -8.30900 -7.77046 -6.47478 -4.03212 3.03671 3.21188 3.29370 3.59809 4.10332 4.21765 4.50534 4.95398 5.20198 5.20977 5.33671 5.35673 5.38789 5.52046 5.55796 5.69513 5.74834 5.80097 5.87982 5.97673 6.09668 6.11418 6.14407 6.16267 6.17742 6.21902 6.23280 6.23414 6.31758 6.35272 6.44984 6.47635 6.50669 6.59016 6.69950 6.74534 6.78952 6.91295 7.01767 7.10610 7.40077 8.10298 8.29185 8.97647 9.39991 9.73254 10.63541 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.006876 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.299992 B = 4070.935592 C = 4913.980059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.103 3.897 5 N -0.462 5.462 6 C -0.338 4.338 7 H 0.106 0.894 8 C 0.065 3.935 9 N -0.861 5.861 10 Si 0.876 3.124 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.507 3.493 15 O -0.586 6.586 16 C -0.142 4.142 17 H 0.120 0.880 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.088 4.088 21 C -0.145 4.145 22 C -0.079 4.079 23 C -0.130 4.130 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.274 0.726 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 1.842 8.392 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.181 5.181 6 C -0.465 4.465 7 H 0.123 0.877 8 C -0.141 4.141 9 N -0.497 5.497 10 Si 0.704 3.296 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.297 3.703 15 O -0.472 6.472 16 C -0.162 4.162 17 H 0.138 0.862 18 C -0.189 4.189 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.202 4.202 22 C -0.116 4.116 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.930 1.520 8.664 9.006 hybrid contribution 0.517 -0.804 -0.471 1.066 sum -1.413 0.716 8.193 8.344 Atomic orbital electron populations 1.21736 0.96159 1.00866 1.01736 1.21486 0.95588 0.97521 1.01569 1.21838 0.96051 0.95899 1.02484 1.21604 0.93928 0.85485 1.00993 1.43722 1.56979 1.11556 1.05837 1.19095 1.44366 0.96595 0.86441 0.87654 1.25294 0.95941 0.98141 0.94773 1.69759 1.41829 1.40113 0.97992 0.86972 0.79983 0.83672 0.78930 1.20205 1.21724 1.18718 1.19472 0.79555 0.87950 0.83364 1.90493 1.57172 1.68207 1.31298 1.22125 1.03007 0.91991 0.99120 0.86238 1.22912 0.94466 0.99156 1.02407 1.21547 0.98995 0.98797 0.90993 1.21070 0.96607 0.93822 1.01003 1.21702 1.00399 0.97161 1.00972 1.21087 0.99717 0.97134 0.93632 1.21586 0.97426 0.99114 1.00615 0.92941 0.92764 0.93291 0.92319 0.92313 0.92177 0.91201 0.92078 0.91278 0.91575 0.89257 0.88926 0.92031 0.91571 0.93312 0.92807 0.92811 0.94061 0.89323 0.94082 0.91598 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.12 -2.41 5.54 -26.73 -0.15 -2.55 16 4 C 0.10 2.28 4.25 -4.04 -0.02 2.26 16 5 N -0.46 -11.01 2.22 -114.81 -0.25 -11.27 16 6 C -0.34 -8.71 9.02 -14.94 -0.13 -8.85 16 7 H 0.11 2.85 7.35 -52.49 -0.39 2.46 16 8 C 0.07 1.72 5.33 -17.47 -0.09 1.62 16 9 N -0.86 -23.67 13.96 55.50 0.77 -22.90 16 10 Si 0.88 20.68 24.88 -169.99 -4.23 16.46 16 11 H -0.27 -6.23 6.69 56.52 0.38 -5.85 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.51 11.50 7.29 -10.99 -0.08 11.42 16 15 O -0.59 -13.65 10.93 5.55 0.06 -13.59 16 16 C -0.14 -2.79 4.44 -91.77 -0.41 -3.20 16 17 H 0.12 2.43 7.68 -51.93 -0.40 2.03 16 18 C -0.15 -2.58 9.29 -26.73 -0.25 -2.83 16 19 C -0.10 -1.70 1.52 -154.51 -0.24 -1.93 16 20 C -0.09 -1.22 5.82 -26.73 -0.16 -1.38 16 21 C -0.15 -1.71 9.74 37.16 0.36 -1.35 16 22 C -0.08 -1.32 5.05 -26.73 -0.13 -1.46 16 23 C -0.13 -2.16 8.97 37.15 0.33 -1.83 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.06 1.40 2.92 -51.93 -0.15 1.25 16 32 H 0.07 1.52 7.36 -51.93 -0.38 1.14 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 36 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16 37 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 40 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 41 H 0.04 0.62 7.72 -51.93 -0.40 0.21 16 42 H 0.09 1.72 5.86 -51.93 -0.30 1.42 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.27 6.73 -51.93 -0.35 0.92 16 45 H 0.03 0.50 6.87 -51.93 -0.36 0.14 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -27.20 345.26 -7.29 -34.48 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.09 Total: 5.46 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.75 Total: -13.85 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.52 Total: -34.16 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.06 Total: -13.59 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.23 Total: 16.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.20 -7.29 -34.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181882615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.134 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds