Wall clock time and date at job start Mon Mar 30 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46846 * 2 1 4 4 C 1.52993 * 109.47083 * 120.00195 * 2 1 3 5 5 H 1.08998 * 109.44986 * 306.77270 * 4 2 1 6 6 C 1.54859 * 109.43176 * 66.71143 * 4 2 1 7 7 C 1.47092 * 110.32460 * 191.29216 * 6 4 2 8 8 C 1.52570 * 114.32580 * 297.19718 * 7 6 4 9 9 C 1.50881 * 109.35879 * 85.01258 * 8 7 6 10 10 C 1.53605 * 109.95298 * 268.02506 * 9 8 7 11 11 N 1.44584 * 109.44913 * 186.82875 * 4 2 1 12 12 C 1.34777 * 118.64416 * 329.24033 * 11 4 2 13 13 O 1.21286 * 120.00022 * 353.87984 * 12 11 4 14 14 C 1.50697 * 120.00038 * 173.61564 * 12 11 4 15 15 C 1.53003 * 109.47220 * 180.27192 * 14 12 11 16 16 C 1.50698 * 109.47223 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99948 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99856 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00015 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47004 * 59.99728 * 20 18 16 22 22 H 1.48491 * 109.47155 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46772 * 299.99673 * 20 18 16 24 24 H 1.09003 * 109.46986 * 299.99844 * 1 2 3 25 25 H 1.09002 * 109.47048 * 59.99978 * 1 2 3 26 26 H 1.09001 * 109.46819 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46995 * 240.00644 * 2 1 3 28 28 H 1.09003 * 109.46499 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47612 * 299.99896 * 3 2 1 30 30 H 1.08998 * 109.46798 * 60.00523 * 3 2 1 31 31 H 1.08995 * 109.32526 * 311.55661 * 6 4 2 32 32 H 1.08998 * 109.32747 * 71.20064 * 6 4 2 33 33 H 1.08995 * 108.51466 * 58.45373 * 7 6 4 34 34 H 1.08998 * 108.51162 * 175.94466 * 7 6 4 35 35 H 1.09002 * 109.49043 * 204.98076 * 8 7 6 36 36 H 1.09004 * 109.48783 * 325.02407 * 8 7 6 37 37 H 1.09000 * 109.36325 * 28.30584 * 9 8 7 38 38 H 1.08999 * 109.36506 * 147.91992 * 9 8 7 39 39 H 1.08999 * 108.93292 * 280.02701 * 10 9 8 40 40 H 1.09000 * 108.75022 * 161.51593 * 10 9 8 41 41 H 1.09006 * 109.46775 * 300.27064 * 14 12 11 42 42 H 1.08997 * 109.47691 * 60.27111 * 14 12 11 43 43 H 1.08997 * 109.47310 * 299.99906 * 15 14 12 44 44 H 1.09005 * 109.46718 * 59.99706 * 15 14 12 45 45 H 0.97005 * 119.99891 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5809 -0.2820 2.1348 6 6 1.6673 -2.2220 1.1657 7 6 1.9034 -2.8798 2.4600 8 6 3.3614 -2.8772 2.9097 9 6 3.6635 -1.5805 3.6195 10 6 4.2015 -0.5477 2.6179 11 7 3.4767 -0.5822 1.3325 12 6 4.1839 -0.4856 0.1893 13 8 3.6298 -0.6270 -0.8803 14 6 5.6619 -0.1958 0.2397 15 6 6.2179 -0.1317 -1.1843 16 6 7.6958 0.1586 -1.1338 17 1 8.1890 0.2852 -0.1815 18 6 8.4180 0.2637 -2.3036 19 7 7.8172 0.1100 -3.4634 20 14 10.2501 0.6229 -2.2411 21 1 10.9406 -0.4553 -1.4888 22 1 10.7897 0.6852 -3.6232 23 1 10.4765 1.9238 -1.5617 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6149 -2.3181 0.8988 32 1 2.2784 -2.7036 0.4024 33 1 1.3063 -2.3745 3.2191 34 1 1.5648 -3.9134 2.3898 35 1 3.5341 -3.7123 3.5886 36 1 4.0104 -2.9757 2.0395 37 1 2.7521 -1.2000 4.0806 38 1 4.4110 -1.7575 4.3928 39 1 5.2569 -0.7492 2.4346 40 1 4.1031 0.4468 3.0531 41 1 5.8280 0.7593 0.7380 42 1 6.1686 -0.9869 0.7923 43 1 6.0517 -1.0868 -1.6826 44 1 5.7111 0.6594 -1.7369 45 1 8.3254 0.1835 -4.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435708135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:21 Heat of formation + Delta-G solvation = -50.067825 kcal Electronic energy + Delta-G solvation = -22103.543305 eV Core-core repulsion = 19120.501616 eV Total energy + Delta-G solvation = -2983.041689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63570 -37.32292 -35.41419 -33.73749 -33.32657 -31.36617 -30.83112 -27.30962 -26.69824 -25.58598 -24.75869 -22.19837 -21.10469 -20.42370 -20.19190 -18.13674 -16.62700 -16.15507 -15.88337 -15.42782 -14.96345 -14.43994 -14.30724 -14.13145 -13.72055 -13.52110 -13.07369 -12.90614 -12.41263 -12.27921 -12.12677 -11.98853 -11.79277 -11.65994 -11.27907 -11.13008 -10.95448 -10.89192 -10.76164 -10.68571 -10.63981 -10.55421 -10.31233 -10.13683 -9.89457 -9.50242 -9.08443 -8.40952 -8.30635 -8.18931 -5.93938 -3.98133 3.27436 3.35436 3.37791 3.40557 3.42923 4.48367 4.60225 4.73387 4.84326 4.97438 5.09589 5.17266 5.25999 5.37806 5.40959 5.48114 5.54241 5.62990 5.67405 5.72982 5.78751 5.87062 5.90325 5.96681 6.04046 6.06763 6.12327 6.17918 6.18815 6.23668 6.27468 6.30046 6.40012 6.43988 6.64688 6.75960 6.94918 7.20651 7.76563 7.85960 7.89919 8.09930 8.42184 8.89631 9.10540 9.65247 11.16905 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.005143 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.877015 B = 5443.419321 C = 6130.928512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.135 4.135 4 C 0.163 3.837 5 H 0.068 0.932 6 C -0.134 4.134 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.130 4.130 10 C 0.109 3.891 11 N -0.614 5.614 12 C 0.511 3.489 13 O -0.523 6.523 14 C -0.132 4.132 15 C 0.039 3.961 16 C -0.527 4.527 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.129 0.871 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 -2.869 14.712 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.192 4.192 4 C 0.058 3.942 5 H 0.086 0.914 6 C -0.173 4.173 7 C -0.151 4.151 8 C -0.155 4.155 9 C -0.168 4.168 10 C -0.014 4.014 11 N -0.349 5.349 12 C 0.302 3.698 13 O -0.399 6.399 14 C -0.172 4.172 15 C 0.002 3.998 16 C -0.565 4.565 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.218 -2.933 13.957 19.445 hybrid contribution 1.002 0.230 0.213 1.050 sum -12.216 -2.703 14.169 18.902 Atomic orbital electron populations 1.21908 0.96146 1.01106 1.01070 1.21968 0.94194 0.97102 1.01177 1.21757 1.01697 0.95626 1.00157 1.20961 0.80621 0.94370 0.98201 0.91361 1.21294 1.01712 0.96305 0.97943 1.20436 0.96552 1.00385 0.97742 1.21072 0.96993 0.96902 1.00548 1.21707 1.01606 0.95692 0.97824 1.21852 0.97068 0.98608 0.83909 1.47897 1.06167 1.74628 1.06220 1.21413 0.90471 0.74894 0.82977 1.90491 1.70551 1.49168 1.29705 1.21934 0.89372 1.01508 1.04357 1.18877 0.94554 0.98387 0.88025 1.21189 0.93825 1.49139 0.92368 0.92785 1.25008 0.98289 0.95430 0.95549 1.69986 1.35955 1.49610 0.97296 0.86679 0.85604 0.78802 0.77004 1.20279 1.21294 1.20273 0.93691 0.92805 0.92862 0.85395 0.92375 0.93163 0.94292 0.91176 0.91345 0.92753 0.92818 0.92219 0.91278 0.91850 0.90834 0.89446 0.92350 0.90544 0.90529 0.95917 0.95886 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.00 37.16 0.33 -1.37 16 2 C -0.13 -1.85 1.85 -90.62 -0.17 -2.02 16 3 C -0.14 -2.08 8.53 37.16 0.32 -1.77 16 4 C 0.16 2.16 1.53 -67.98 -0.10 2.05 16 5 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 6 C -0.13 -1.65 5.01 -28.59 -0.14 -1.79 16 7 C -0.11 -1.18 5.15 -29.79 -0.15 -1.33 16 8 C -0.12 -1.23 5.50 -28.02 -0.15 -1.39 16 9 C -0.13 -1.23 5.71 -27.48 -0.16 -1.38 16 10 C 0.11 1.26 5.89 -3.12 -0.02 1.24 16 11 N -0.61 -8.94 1.85 -165.13 -0.31 -9.24 16 12 C 0.51 9.66 5.39 -10.99 -0.06 9.60 16 13 O -0.52 -11.54 11.81 5.55 0.07 -11.47 16 14 C -0.13 -2.69 4.11 -27.88 -0.11 -2.80 16 15 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 16 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.47 13.29 55.43 0.74 -26.74 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.57 6.41 -51.93 -0.33 0.24 16 27 H 0.13 2.34 5.35 -52.93 -0.28 2.05 16 28 H 0.06 1.04 5.52 -51.93 -0.29 0.75 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.78 6.23 -51.93 -0.32 0.45 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.89 7.48 -51.93 -0.39 0.50 16 37 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.05 5.85 -51.93 -0.30 0.74 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.44 7.16 -51.93 -0.37 1.07 16 43 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -31.58 334.70 -8.51 -40.09 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.08 Total: -0.70 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.95 Total: -13.68 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.43 Total: -35.98 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.58 -8.51 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435708135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.981 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds