Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47200 * 120.00398 * 9 7 5 12 12 H 1.48505 * 109.46878 * 239.99713 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.52997 * 109.47000 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47610 * 294.99798 * 18 17 16 20 20 C 1.52997 * 109.47610 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.46884 * 60.00099 * 20 19 18 22 22 C 1.53006 * 109.47016 * 300.00416 * 21 20 19 23 23 C 1.52992 * 109.47158 * 59.99906 * 22 21 20 24 24 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 26 26 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 27 27 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 28 28 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 29 29 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 31 31 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 32 32 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 33 33 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 34 34 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 35 35 H 1.09001 * 109.47126 * 55.00303 * 18 17 16 36 36 H 1.09001 * 109.47288 * 300.00405 * 19 18 17 37 37 H 1.09007 * 109.47011 * 59.99931 * 19 18 17 38 38 H 1.09001 * 109.47126 * 300.00504 * 20 19 18 39 39 H 1.08991 * 109.47749 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47017 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46908 * 60.00271 * 21 20 19 42 42 H 1.08999 * 109.46427 * 299.99764 * 22 21 20 43 43 H 1.09000 * 109.46479 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.47307 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47252 * 59.99847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6158 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 6 -1.7945 4.5621 3.8346 19 6 -1.8677 3.5165 4.9490 20 6 -2.2757 4.1944 6.2586 21 6 -3.6459 4.8532 6.0865 22 6 -3.5726 5.8989 4.9720 23 6 -3.1647 5.2210 3.6626 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8292 -0.0604 -2.9502 30 1 2.2718 2.1233 1.9978 31 1 0.0680 2.6060 3.4684 32 1 0.7223 4.1501 2.8717 33 1 -1.4211 4.6108 1.7132 34 1 -2.0755 3.0668 2.3099 35 1 -1.0565 5.3206 4.0960 36 1 -2.6057 2.7580 4.6877 37 1 -0.8917 3.0468 5.0713 38 1 -1.5381 4.9531 6.5201 39 1 -2.3283 3.4494 7.0524 40 1 -3.9363 5.3365 7.0193 41 1 -4.3835 4.0945 5.8250 42 1 -2.8350 6.6575 5.2336 43 1 -4.5487 6.3685 4.8498 44 1 -3.1120 5.9660 2.8686 45 1 -3.9023 4.4623 3.4010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = -106.679265 kcal Electronic energy + Delta-G solvation = -20873.916496 eV Core-core repulsion = 17888.419951 eV Total energy + Delta-G solvation = -2985.496545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76042 -39.49177 -36.96585 -34.69422 -34.24968 -32.78731 -31.59270 -30.29502 -28.78340 -25.64812 -24.64409 -23.40056 -22.21147 -21.38211 -20.91098 -20.55686 -18.81770 -17.40165 -17.15191 -16.67216 -16.21995 -15.91899 -15.42638 -15.05887 -14.80693 -14.71020 -14.56042 -14.35449 -13.72043 -13.51557 -13.26733 -13.19165 -12.93964 -12.86769 -12.70701 -12.67028 -12.42901 -12.14156 -12.03580 -11.96680 -11.92300 -11.62584 -11.56711 -11.25203 -11.03540 -10.87554 -10.74064 -10.60081 -10.43482 -9.56570 -8.15879 -6.33236 1.43561 1.44720 1.56608 1.96509 2.37590 2.75584 3.13447 3.79925 3.83039 3.89998 4.11371 4.21861 4.29271 4.46829 4.49411 4.54595 4.57397 4.64096 4.66287 4.71953 4.74711 4.76138 4.86788 4.87668 5.05669 5.07836 5.15437 5.22707 5.26611 5.30100 5.33334 5.39797 5.43180 5.45122 5.47844 5.56478 5.57590 5.67258 5.69858 5.81172 5.96528 6.18756 6.76397 7.07889 7.34904 7.68763 8.89652 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.003448 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.449897 B = 8117.769950 C = 8363.010134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.710 5.710 14 C 0.491 3.509 15 O -0.594 6.594 16 C -0.129 4.129 17 C -0.091 4.091 18 C -0.079 4.079 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.116 4.116 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 8.009 17.835 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.359 5.359 14 C 0.279 3.721 15 O -0.475 6.475 16 C -0.169 4.169 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.154 4.154 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.238 0.762 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.832 7.889 17.003 21.167 hybrid contribution 1.086 -0.255 -0.606 1.270 sum -8.746 7.634 16.397 20.091 Atomic orbital electron populations 1.21665 0.97021 0.99018 1.00239 1.21775 0.93714 0.99298 1.01169 1.18327 0.93530 0.89131 0.81731 0.98788 1.21643 0.91563 1.38691 1.06626 0.91047 1.25799 1.03366 0.94439 0.95068 1.70067 1.36992 1.38521 1.09882 0.85318 0.79117 0.77815 0.78203 1.18359 1.20455 1.21088 1.46317 1.15956 1.56246 1.17369 1.21489 0.81443 0.78345 0.90801 1.90643 1.52537 1.61326 1.43037 1.21749 0.99154 1.01906 0.94072 1.21288 0.94360 0.99651 0.97630 1.21127 0.97445 0.97569 0.93559 1.21664 1.01693 0.97541 0.94643 1.21529 0.97166 0.99916 0.96878 1.21554 0.97343 0.98230 0.98640 1.21516 1.01474 0.97959 0.94425 1.21582 0.96438 0.99498 0.97884 0.93680 0.93595 0.95807 0.91210 0.94062 0.92667 0.76236 0.87042 0.87327 0.93236 0.93195 0.90362 0.92794 0.91232 0.91552 0.91569 0.91285 0.92540 0.91647 0.91710 0.92433 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.34 2.24 44.25 0.10 14.44 16 4 H -0.01 -0.36 7.58 -2.38 -0.02 -0.38 16 5 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.71 5.29 84.66 0.45 1.16 16 8 N -0.92 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.31 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.71 -29.14 5.02 -446.08 -2.24 -31.38 16 14 C 0.49 19.06 6.40 87.66 0.56 19.62 16 15 O -0.59 -28.35 13.12 -3.04 -0.04 -28.39 16 16 C -0.13 -3.34 5.46 29.85 0.16 -3.18 16 17 C -0.09 -2.34 3.97 30.59 0.12 -2.22 16 18 C -0.08 -1.48 2.19 -10.79 -0.02 -1.51 16 19 C -0.12 -1.99 4.96 30.59 0.15 -1.84 16 20 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 21 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 22 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 23 C -0.12 -2.12 5.20 30.59 0.16 -1.96 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 26 H 0.02 1.17 7.85 -2.39 -0.02 1.16 16 27 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.40 13.87 8.54 -92.71 -0.79 13.07 16 31 H 0.11 2.36 6.56 -2.38 -0.02 2.35 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.44 8.10 -2.39 -0.02 1.43 16 34 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.11 6.56 -2.38 -0.02 1.09 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.44 343.24 3.36 -62.08 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.15 Total: 25.84 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.23 Total: -19.70 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.00 Total: -84.14 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.04 Total: -28.39 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -65.44 3.36 -62.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.602 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds