Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46910 * 2 1 4 4 H 1.09007 * 109.47250 * 304.99629 * 3 2 1 5 5 C 1.50707 * 109.47004 * 185.00001 * 3 2 1 6 6 H 1.08003 * 119.99506 * 239.99848 * 5 3 2 7 7 C 1.37874 * 119.99891 * 59.99649 * 5 3 2 8 8 N 1.31508 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99685 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47090 * 60.00600 * 9 7 5 11 11 H 1.48506 * 109.46712 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47088 * 299.99892 * 9 7 5 13 13 N 1.46496 * 109.47630 * 64.99815 * 3 2 1 14 14 C 1.34779 * 120.00255 * 275.00074 * 13 3 2 15 15 O 1.21284 * 119.99695 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00395 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47242 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46817 * 60.00357 * 17 16 14 19 19 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 20 20 C 1.53001 * 109.46637 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 18 17 23 23 H 1.09002 * 109.47153 * 300.00319 * 22 21 18 24 24 C 1.52992 * 109.47482 * 180.02562 * 22 21 18 25 25 C 1.52999 * 109.47317 * 59.99960 * 22 21 18 26 26 H 1.08998 * 109.46588 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47059 * 300.00078 * 1 2 3 28 28 H 1.08997 * 109.46976 * 60.00353 * 1 2 3 29 29 H 1.08994 * 109.47059 * 239.99922 * 2 1 3 30 30 H 1.08997 * 109.46976 * 119.99647 * 2 1 3 31 31 H 0.97005 * 120.00086 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00100 * 94.99401 * 13 3 2 33 33 H 1.09001 * 109.46944 * 59.99782 * 16 14 13 34 34 H 1.08993 * 109.47194 * 299.99839 * 17 16 14 35 35 H 1.09002 * 109.46695 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47508 * 299.99876 * 20 18 17 37 37 H 1.09000 * 109.47437 * 60.00474 * 20 18 17 38 38 H 1.09001 * 109.47109 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.47398 * 59.99826 * 21 18 17 40 40 H 1.09001 * 109.47194 * 180.02562 * 21 18 17 41 41 H 1.09001 * 109.47066 * 60.00169 * 24 22 21 42 42 H 1.08996 * 109.47747 * 179.97438 * 24 22 21 43 43 H 1.09002 * 109.47103 * 300.00247 * 24 22 21 44 44 H 1.09000 * 109.47486 * 180.02562 * 25 22 21 45 45 H 1.09002 * 109.46716 * 60.00091 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8800 -1.3810 10 1 6.5967 0.1452 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0975 1.2517 14 6 0.4351 2.6645 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 6 -1.3825 3.8947 2.5208 18 6 -2.3533 2.7506 2.2215 19 1 -2.0648 2.2636 1.2902 20 6 -3.7721 3.3075 2.0883 21 6 -2.3104 1.7334 3.3636 22 6 -0.8917 1.1765 3.4975 23 1 -0.6031 0.6894 2.5660 24 6 -0.8488 0.1589 4.6391 25 6 0.0792 2.3205 3.7967 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8294 -0.0612 -2.9498 32 1 2.2719 2.1232 1.9977 33 1 0.7276 4.1531 2.8677 34 1 -1.4131 4.6195 1.7073 35 1 -1.6711 4.3814 3.4525 36 1 -4.0604 3.7943 3.0200 37 1 -3.8031 4.0324 1.2749 38 1 -4.4637 2.4926 1.8747 39 1 -2.5989 2.2205 4.2951 40 1 -3.0017 0.9181 3.1502 41 1 -1.5403 -0.6561 4.4254 42 1 0.1618 -0.2383 4.7342 43 1 -1.1375 0.6455 5.5707 44 1 1.0900 1.9238 3.8916 45 1 -0.2093 2.8076 4.7282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183789324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = -95.402579 kcal Electronic energy + Delta-G solvation = -22384.319347 eV Core-core repulsion = 19399.311796 eV Total energy + Delta-G solvation = -2985.007551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53136 -38.77630 -36.78475 -34.58597 -33.94970 -33.40060 -32.07838 -28.93054 -27.42098 -27.04949 -25.29787 -24.03567 -21.84465 -21.51637 -21.17405 -20.43990 -18.50238 -17.23162 -17.05743 -16.41436 -16.10607 -15.99575 -15.61403 -15.00533 -14.67687 -14.49381 -14.47776 -13.79956 -13.43281 -13.37824 -13.20937 -13.14925 -13.03390 -12.88253 -12.68434 -12.64802 -12.61022 -12.54042 -12.17995 -12.07415 -11.93017 -11.72541 -11.41184 -11.16656 -11.03758 -10.85875 -10.83405 -10.52932 -10.10295 -9.49555 -8.14982 -6.32371 1.43967 1.45777 1.53487 2.02988 2.37936 2.78365 3.14198 3.78255 3.83769 3.85353 4.12651 4.26139 4.37771 4.46397 4.49222 4.51439 4.61444 4.66033 4.74456 4.81479 4.84740 4.89957 4.94941 4.99982 5.04038 5.06900 5.09217 5.12974 5.19516 5.28535 5.34420 5.41042 5.44900 5.51440 5.54626 5.59007 5.63509 5.67626 5.83964 5.88330 5.99416 6.21406 6.77254 7.12849 7.35962 7.74258 8.89972 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.005383 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.385447 B = 5200.791623 C = 5308.061661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 C 0.281 3.719 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.581 6.581 16 C -0.107 4.107 17 C -0.084 4.084 18 C -0.111 4.111 19 H 0.062 0.938 20 C -0.137 4.137 21 C -0.098 4.098 22 C -0.106 4.106 23 H 0.043 0.957 24 C -0.139 4.139 25 C -0.096 4.096 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.399 0.601 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 3.732 15.642 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.357 5.357 14 C 0.291 3.709 15 O -0.462 6.462 16 C -0.128 4.128 17 C -0.122 4.122 18 C -0.130 4.130 19 H 0.080 0.920 20 C -0.194 4.194 21 C -0.135 4.135 22 C -0.125 4.125 23 H 0.062 0.938 24 C -0.196 4.196 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.751 3.607 14.795 17.564 hybrid contribution 1.261 -0.225 -0.767 1.493 sum -7.490 3.382 14.028 16.258 Atomic orbital electron populations 1.21822 0.97052 0.98823 1.00915 1.21728 0.93714 0.99318 1.00805 1.18255 0.93300 0.88992 0.81693 0.98840 1.21582 0.91703 1.38767 1.06563 0.91232 1.25763 1.03217 0.94435 0.95054 1.70052 1.37089 1.38458 1.09871 0.85458 0.79276 0.78428 0.77528 1.18910 1.21263 1.19679 1.46285 1.15907 1.56428 1.17098 1.21197 0.81263 0.78207 0.90253 1.90587 1.51791 1.61187 1.42622 1.21460 0.99698 0.99375 0.92245 1.21317 0.91963 0.97172 1.01769 1.21363 0.95433 0.96563 0.99628 0.92021 1.21732 0.95566 1.00444 1.01706 1.21575 0.95562 0.97790 0.98585 1.21289 0.96037 0.96376 0.98755 0.93824 1.21749 1.01587 0.98253 0.98026 1.21570 0.99830 0.94780 0.97201 0.94357 0.91962 0.96002 0.91511 0.94444 0.92705 0.76674 0.87344 0.93553 0.88989 0.91229 0.93865 0.93127 0.90138 0.92900 0.93089 0.92966 0.90874 0.91382 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.52 71.99 0.61 -5.32 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.68 16 3 C 0.28 14.53 2.24 44.25 0.10 14.63 16 4 H -0.01 -0.39 7.58 -2.38 -0.02 -0.41 16 5 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -53.21 11.29 21.44 0.24 -52.97 16 9 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.71 -29.02 4.91 -446.09 -2.19 -31.21 16 14 C 0.50 19.24 4.48 87.66 0.39 19.63 16 15 O -0.58 -26.81 10.80 -3.04 -0.03 -26.85 16 16 C -0.11 -2.84 3.01 -11.54 -0.03 -2.87 16 17 C -0.08 -2.13 4.37 30.59 0.13 -2.00 16 18 C -0.11 -3.03 2.43 -10.79 -0.03 -3.06 16 19 H 0.06 2.27 5.51 -2.39 -0.01 2.26 16 20 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 21 C -0.10 -2.23 4.48 30.59 0.14 -2.09 16 22 C -0.11 -2.60 2.50 -10.80 -0.03 -2.63 16 23 H 0.04 1.42 4.83 -2.39 -0.01 1.41 16 24 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 25 C -0.10 -2.08 4.64 30.60 0.14 -1.94 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 2.69 3.21 -2.39 -0.01 2.69 16 28 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 29 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.40 14.09 7.96 -92.71 -0.74 13.35 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.46 7.56 -2.39 -0.02 1.45 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.80 332.83 3.85 -60.95 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.22 Total: 29.28 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.59 Total: -23.64 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.95 Total: -84.19 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.03 Total: -26.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -64.80 3.85 -60.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183789324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.457 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds