Wall clock time and date at job start Mon Mar 30 2020 00:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46862 * 55.00856 * 3 2 1 5 5 C 1.52997 * 109.47482 * 295.00291 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 8 8 C 1.53002 * 109.46891 * 299.99597 * 7 6 5 9 9 H 1.09001 * 109.47142 * 300.00176 * 8 7 6 10 10 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 11 11 N 1.46900 * 109.47087 * 65.00531 * 10 8 7 12 12 C 1.47476 * 111.00147 * 74.02825 * 11 10 8 13 13 C 1.53509 * 87.93532 * 138.70397 * 12 11 10 14 14 O 1.42904 * 114.34441 * 87.63010 * 13 12 11 15 15 C 1.50698 * 114.17418 * 220.32909 * 13 12 11 16 16 H 1.07997 * 120.00145 * 93.83990 * 15 13 12 17 17 C 1.37877 * 119.99720 * 273.84133 * 15 13 12 18 18 N 1.31514 * 120.00382 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99881 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46931 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47204 * 119.99808 * 19 17 15 22 22 H 1.48503 * 109.47309 * 239.99840 * 19 17 15 23 23 C 1.47487 * 111.00106 * 169.99718 * 11 10 8 24 24 C 1.52997 * 109.46978 * 60.00410 * 8 7 6 25 25 H 1.09000 * 109.46593 * 299.99796 * 1 2 3 26 26 H 1.08998 * 109.46891 * 59.99794 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47097 * 240.00184 * 2 1 3 29 29 H 1.09006 * 109.47311 * 120.00941 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 34 34 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 35 35 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47140 * 185.00052 * 10 8 7 37 37 H 1.09000 * 109.47805 * 304.99925 * 10 8 7 38 38 H 1.09004 * 113.47204 * 253.46702 * 12 11 10 39 39 H 1.08991 * 113.47844 * 23.93510 * 12 11 10 40 40 H 0.96701 * 113.99929 * 86.07851 * 14 13 12 41 41 H 0.96995 * 120.00340 * 179.97438 * 18 17 15 42 42 H 1.09001 * 113.47652 * 336.06397 * 23 11 10 43 43 H 1.09003 * 113.47146 * 106.52569 * 23 11 10 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 8 7 45 45 H 1.09000 * 109.47140 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1459 3.5688 -1.3074 7 6 3.6707 3.5700 -1.1821 8 6 4.0755 2.8860 0.1253 9 1 3.6412 3.4252 0.9671 10 6 5.6003 2.8866 0.2503 11 7 6.0812 4.2695 0.3703 12 6 5.7896 4.8162 1.7086 13 6 7.1857 5.4542 1.6912 14 8 7.2340 6.7496 1.0898 15 6 7.9135 5.3824 3.0088 16 1 8.5944 4.5675 3.2060 17 6 7.7102 6.3570 3.9626 18 7 6.8815 7.3496 3.7224 19 14 8.6118 6.2676 5.5962 20 1 9.4788 5.0622 5.6178 21 1 9.4483 7.4827 5.7671 22 1 7.6247 6.1867 6.7027 23 6 7.5112 4.3025 0.7298 24 6 3.5649 1.4437 0.1254 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 0.5489 2.1253 -1.3968 31 1 2.0699 1.5875 -2.1491 32 1 1.8571 4.0563 -2.2386 33 1 1.7117 4.1081 -0.4656 34 1 4.1050 3.0308 -2.0239 35 1 4.0345 4.5976 -1.1827 36 1 5.8925 2.3223 1.1359 37 1 6.0378 2.4253 -0.6351 38 1 4.9792 5.5451 1.7127 39 1 5.6720 4.0498 2.4746 40 1 7.0286 7.4733 1.6975 41 1 6.7382 8.0350 4.3936 42 1 7.8530 3.3989 1.2346 43 1 8.1597 4.5960 -0.0957 44 1 3.9992 0.9044 -0.7164 45 1 3.8537 0.9562 1.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190980299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:50 Heat of formation + Delta-G solvation = -69.300712 kcal Electronic energy + Delta-G solvation = -21323.893087 eV Core-core repulsion = 18340.017397 eV Total energy + Delta-G solvation = -2983.875690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16410 -39.69210 -36.46222 -34.90466 -34.10282 -32.66899 -30.35261 -29.20081 -27.20241 -26.68389 -24.87907 -23.62287 -22.75064 -20.87035 -20.66690 -20.39105 -19.20891 -17.14287 -16.79784 -16.31809 -16.24787 -15.76336 -15.68455 -15.12018 -14.96217 -14.59861 -14.44426 -14.17964 -13.86085 -13.51831 -13.40508 -13.26983 -13.09094 -12.80134 -12.58828 -12.38021 -12.30281 -12.24200 -12.20009 -12.02927 -11.84910 -11.72261 -11.49150 -11.29326 -11.12767 -10.80718 -10.75316 -10.60242 -10.06860 -9.61901 -8.26429 -6.44431 1.40133 1.42963 1.54506 2.36126 2.94416 3.23380 3.64111 3.79532 3.86298 4.04748 4.08840 4.22776 4.25316 4.31841 4.38028 4.46091 4.50654 4.56685 4.60430 4.64733 4.73182 4.77632 4.81291 4.84350 4.88968 4.93035 5.02026 5.08131 5.13949 5.20379 5.22581 5.28084 5.33161 5.35341 5.39823 5.46143 5.53012 5.56529 5.59329 5.68417 5.74668 5.96220 6.37852 6.61715 7.28842 7.55305 8.78982 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.004100 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.346258 B = 6827.701469 C = 7190.084153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.056 0.944 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.100 4.100 8 C -0.074 4.074 9 H 0.045 0.955 10 C 0.023 3.977 11 N -0.468 5.468 12 C -0.003 4.003 13 C 0.218 3.782 14 O -0.583 6.583 15 C -0.558 4.558 16 H 0.065 0.935 17 C 0.026 3.974 18 N -0.920 5.920 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.010 3.990 24 C -0.101 4.101 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.383 0.617 41 H 0.274 0.726 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 -13.028 -6.808 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.138 4.138 8 C -0.093 4.093 9 H 0.063 0.937 10 C -0.105 4.105 11 N -0.190 5.190 12 C -0.132 4.132 13 C 0.177 3.823 14 O -0.395 6.395 15 C -0.596 4.596 16 H 0.083 0.917 17 C -0.174 4.174 18 N -0.562 5.562 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.118 4.118 24 C -0.139 4.139 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.238 0.762 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.750 -12.909 -7.890 18.560 hybrid contribution 0.602 0.276 2.186 2.284 sum -10.148 -12.633 -5.704 17.179 Atomic orbital electron populations 1.21816 0.95374 1.01889 1.01905 1.21533 0.96314 0.95358 1.02123 1.21147 0.94552 0.96566 0.98068 0.92511 1.21590 1.00879 0.94671 0.97266 1.21539 0.95031 0.97605 1.01403 1.21381 0.95893 1.00012 0.96495 1.21005 0.93132 0.97015 0.98114 0.93668 1.22773 0.96698 0.90386 1.00661 1.68837 1.05587 1.17451 1.27174 1.24315 1.01013 0.98301 0.89614 1.19748 0.91261 0.81430 0.89880 1.86009 1.93154 1.17568 1.42769 1.21894 1.27104 1.10469 1.00155 0.91664 1.25842 0.94923 0.94332 1.02271 1.69380 1.36521 1.13355 1.36896 0.85332 0.78405 0.78326 0.78492 1.19113 1.20266 1.20221 1.23975 0.91702 0.98095 0.98067 1.21566 0.95778 0.94642 1.01923 0.93256 0.92125 0.92144 0.91422 0.92230 0.90929 0.91435 0.91434 0.93365 0.91868 0.93747 0.94890 0.90259 0.93699 0.92736 0.76227 0.91566 0.90722 0.91277 0.91075 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.50 16 2 C -0.12 -1.88 5.40 30.59 0.17 -1.72 16 3 C -0.08 -1.70 2.19 -10.79 -0.02 -1.72 16 4 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.11 -2.02 4.96 30.59 0.15 -1.87 16 6 C -0.12 -2.76 5.92 30.59 0.18 -2.58 16 7 C -0.10 -2.83 5.09 30.59 0.16 -2.67 16 8 C -0.07 -2.17 2.23 -10.80 -0.02 -2.20 16 9 H 0.04 1.54 7.55 -2.39 -0.02 1.52 16 10 C 0.02 0.79 4.21 86.30 0.36 1.15 16 11 N -0.47 -19.74 5.87 -928.28 -5.45 -25.19 16 12 C 0.00 -0.13 6.36 83.57 0.53 0.40 16 13 C 0.22 11.40 1.57 -11.20 -0.02 11.39 16 14 O -0.58 -33.03 13.54 -148.98 -2.02 -35.05 16 15 C -0.56 -30.36 8.68 25.60 0.22 -30.14 16 16 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 17 C 0.03 1.37 5.39 84.65 0.46 1.83 16 18 N -0.92 -50.40 11.02 21.45 0.24 -50.16 16 19 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 23 C 0.01 0.47 7.12 83.57 0.60 1.06 16 24 C -0.10 -2.32 4.48 30.60 0.14 -2.18 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.82 6.56 -2.39 -0.02 0.80 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.20 6.57 -2.39 -0.02 1.18 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.52 7.75 -2.38 -0.02 1.50 16 36 H 0.03 1.11 7.56 -2.39 -0.02 1.10 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 2.29 8.14 -2.38 -0.02 2.28 16 39 H 0.05 2.58 7.66 -2.39 -0.02 2.56 16 40 H 0.38 22.17 6.33 -74.06 -0.47 21.70 16 41 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.07 3.10 7.72 -2.39 -0.02 3.08 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -57.80 342.38 -1.15 -58.95 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.46 Total: 38.31 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.59 Total: -30.74 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -5.21 Total: -75.35 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -2.02 Total: -35.05 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -57.80 -1.15 -58.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.349 kcal (2) G-P(sol) polarization free energy of solvation -57.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds