Wall clock time and date at job start Mon Mar 30 2020 01:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47075 * 2 1 4 4 C 1.52997 * 109.47415 * 239.99390 * 2 1 3 5 5 C 1.53002 * 109.47092 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46963 * 60.00194 * 5 4 2 7 7 C 1.53000 * 109.46886 * 299.99499 * 6 5 4 8 8 H 1.09002 * 109.47398 * 300.00496 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 10 10 C 1.50705 * 109.47390 * 64.99953 * 9 7 6 11 11 O 1.21282 * 119.99239 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00371 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99986 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47004 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47170 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47311 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99776 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00395 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99801 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47115 * 89.99578 * 20 18 16 22 22 H 1.48501 * 109.47034 * 209.99822 * 20 18 16 23 23 H 1.48500 * 109.46600 * 329.99614 * 20 18 16 24 24 C 1.53002 * 109.47233 * 60.00670 * 7 6 5 25 25 H 1.08996 * 109.47407 * 300.00957 * 1 2 3 26 26 H 1.09004 * 109.46733 * 60.00274 * 1 2 3 27 27 H 1.08992 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 300.00068 * 4 2 1 29 29 H 1.09000 * 109.47140 * 59.99976 * 4 2 1 30 30 H 1.09000 * 109.46497 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47067 * 299.99853 * 5 4 2 32 32 H 1.09001 * 109.46652 * 179.97438 * 6 5 4 33 33 H 1.08992 * 109.47514 * 59.99933 * 6 5 4 34 34 H 1.09001 * 109.47630 * 185.00216 * 9 7 6 35 35 H 1.09004 * 109.47346 * 305.00346 * 9 7 6 36 36 H 0.97000 * 120.00126 * 359.97438 * 12 10 9 37 37 H 1.08993 * 109.47129 * 299.99900 * 13 12 10 38 38 H 1.09004 * 109.46958 * 60.00190 * 13 12 10 39 39 H 1.09001 * 109.47630 * 300.00030 * 14 13 12 40 40 H 1.09004 * 109.47346 * 60.00160 * 14 13 12 41 41 H 1.09006 * 109.47237 * 300.00283 * 15 14 13 42 42 H 1.09003 * 109.47419 * 59.99814 * 15 14 13 43 43 H 0.96995 * 120.00052 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47075 * 59.99068 * 24 7 6 45 45 H 1.08996 * 109.47407 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 6 3.5695 -0.7219 1.2497 8 1 3.9331 0.3056 1.2498 9 6 4.0794 -1.4431 2.4991 10 6 5.5813 -1.3368 2.5627 11 8 6.1844 -0.7424 1.6944 12 7 6.2543 -1.9023 3.5843 13 6 7.7143 -1.7985 3.6463 14 6 8.2242 -2.5198 4.8956 15 6 9.7489 -2.4108 4.9607 16 6 10.2512 -3.1218 6.1909 17 1 9.5528 -3.6028 6.8596 18 6 11.6024 -3.1572 6.4632 19 7 12.4529 -2.5710 5.6492 20 14 12.2251 -4.0390 7.9877 21 1 12.5068 -5.4591 7.6577 22 1 13.4704 -3.3850 8.4639 23 1 11.1930 -3.9738 9.0535 24 6 2.0395 -0.7214 1.2494 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6768 -1.7490 -1.2490 29 1 1.6768 -0.2076 -2.1392 30 1 3.9334 -1.2354 -2.1389 31 1 3.9338 0.3057 -1.2486 32 1 5.1695 -1.4441 0.0006 33 1 3.7159 -2.4709 0.0005 34 1 3.6447 -0.9835 3.3868 35 1 3.7910 -2.4934 2.4555 36 1 5.7719 -2.3774 4.2789 37 1 8.1492 -2.2574 2.7585 38 1 8.0023 -0.7482 3.6906 39 1 7.7893 -2.0605 5.7833 40 1 7.9362 -3.5701 4.8518 41 1 10.1842 -2.8698 4.0730 42 1 10.0366 -1.3604 5.0047 43 1 13.4034 -2.5963 5.8406 44 1 1.6758 -1.7490 1.2492 45 1 1.6761 -0.2071 2.1391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330570812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:23 Heat of formation + Delta-G solvation = -97.291955 kcal Electronic energy + Delta-G solvation = -20053.818216 eV Core-core repulsion = 17068.728735 eV Total energy + Delta-G solvation = -2985.089481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00499 -38.50242 -35.42807 -33.47942 -33.30366 -31.99337 -31.15440 -28.01295 -26.57386 -26.11099 -23.14365 -22.13750 -21.15672 -20.66230 -19.91914 -19.57797 -16.78427 -16.41038 -15.62781 -15.49199 -15.27136 -14.70433 -14.55378 -14.45620 -14.10922 -13.88464 -13.47657 -13.06014 -12.59415 -12.39614 -12.28524 -12.05095 -11.93667 -11.78698 -11.53894 -11.45557 -11.12521 -10.95476 -10.90622 -10.73230 -10.60315 -10.55472 -10.38414 -10.12570 -9.86534 -9.70328 -9.29080 -9.10175 -8.72055 -8.37746 -6.02282 -4.05459 2.84766 3.30330 3.36552 3.39024 3.46134 4.43163 4.44704 4.49094 4.56249 4.85918 4.87486 5.07445 5.09921 5.26409 5.31076 5.33375 5.33619 5.41377 5.48681 5.50965 5.58512 5.65192 5.66371 5.75573 5.78923 5.81050 5.86946 6.05083 6.08241 6.11473 6.17157 6.18354 6.38238 6.41346 6.55888 6.60436 6.85356 7.01204 7.63051 7.75733 7.76520 7.96484 8.37205 8.46967 9.01254 9.58709 11.09000 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.058302 B = 0.002511 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.145224 B =11148.209936 C =11444.887649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.077 0.923 9 C -0.139 4.139 10 C 0.506 3.494 11 O -0.542 6.542 12 N -0.729 5.729 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.062 0.938 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.956 3.016 -10.216 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.089 4.089 8 H 0.096 0.904 9 C -0.179 4.179 10 C 0.292 3.708 11 O -0.420 6.420 12 N -0.380 5.380 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.312 3.482 -10.865 25.954 hybrid contribution 0.260 -0.753 1.258 1.489 sum -23.052 2.729 -9.607 25.122 Atomic orbital electron populations 1.21834 0.95469 1.01656 1.01484 1.21123 0.95081 0.99777 0.95099 0.91254 1.21611 0.95972 1.00381 0.97167 1.21503 0.95010 1.01022 0.97994 1.21711 1.02593 0.98099 0.93370 1.20892 0.94284 1.00377 0.93322 0.90431 1.21765 0.92583 1.03027 1.00485 1.20679 0.89962 0.78633 0.81538 1.90661 1.70494 1.42400 1.38406 1.46271 1.08986 1.56366 1.26358 1.21617 0.77748 1.01237 1.00061 1.21880 1.00796 0.98763 0.94414 1.19033 0.87512 0.97547 0.97335 1.21206 0.92022 1.34503 1.08330 0.92656 1.25040 0.97085 0.95616 0.96781 1.69966 1.02446 1.43816 1.37049 0.86575 0.78341 0.79733 0.83228 1.20653 1.21201 1.19900 1.21663 0.94903 1.00638 0.97450 0.92797 0.92871 0.92801 0.92197 0.92414 0.92280 0.92020 0.89782 0.92831 0.89144 0.89166 0.76911 0.91894 0.91905 0.92784 0.92783 0.96306 0.96293 0.92920 0.91970 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.71 2.72 -90.62 -0.25 -0.96 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 6 C -0.12 -1.31 4.94 -26.73 -0.13 -1.44 16 7 C -0.07 -0.70 1.84 -90.62 -0.17 -0.87 16 8 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 9 C -0.14 -1.36 5.18 -27.88 -0.14 -1.50 16 10 C 0.51 7.16 7.55 -10.99 -0.08 7.08 16 11 O -0.54 -9.73 13.97 5.56 0.08 -9.65 16 12 N -0.73 -10.27 5.56 -60.29 -0.33 -10.61 16 13 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 14 C -0.12 -2.36 5.27 -26.74 -0.14 -2.51 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 C -0.11 -0.86 4.48 -26.73 -0.12 -0.98 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.46 8.47 -40.82 -0.35 4.11 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -31.43 354.31 -9.41 -40.84 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.64 Total: -1.16 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.56 Total: -15.07 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.40 Total: -36.79 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.43 -9.41 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330570812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.453 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds