Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47478 * 2 1 4 4 N 1.46494 * 109.47564 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00191 * 262.32767 * 4 3 2 6 6 H 1.07997 * 120.00056 * 200.03448 * 5 4 3 7 7 C 1.38953 * 119.99607 * 20.04097 * 5 4 3 8 8 N 1.31408 * 120.00136 * 7.49228 * 7 5 4 9 9 Si 1.86796 * 119.99699 * 187.49703 * 7 5 4 10 10 H 1.48500 * 109.46977 * 269.99517 * 9 7 5 11 11 H 1.48500 * 109.47512 * 29.99567 * 9 7 5 12 12 H 1.48498 * 109.47137 * 149.99995 * 9 7 5 13 13 C 1.34774 * 120.00019 * 82.32639 * 4 3 2 14 14 O 1.21298 * 120.00304 * 5.82510 * 13 4 3 15 15 C 1.50706 * 120.00156 * 185.82761 * 13 4 3 16 16 H 1.09001 * 109.46770 * 46.73954 * 15 13 4 17 17 C 1.53002 * 109.46823 * 286.74067 * 15 13 4 18 18 C 1.53000 * 109.46867 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46713 * 60.00558 * 18 17 15 20 20 C 1.53002 * 109.46998 * 299.99361 * 19 18 17 21 21 C 1.52995 * 109.47130 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47223 * 300.00414 * 20 19 18 23 23 C 1.52996 * 109.47038 * 166.74030 * 15 13 4 24 24 H 1.08994 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47083 * 300.00792 * 1 2 3 26 26 H 1.09004 * 109.46687 * 60.00372 * 1 2 3 27 27 H 1.08996 * 109.47635 * 239.99707 * 2 1 3 28 28 H 1.09009 * 109.47087 * 119.99448 * 2 1 3 29 29 H 1.08998 * 109.47385 * 59.99029 * 3 2 1 30 30 H 1.09004 * 109.46858 * 299.99524 * 3 2 1 31 31 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47356 * 299.99529 * 17 15 13 33 33 H 1.08998 * 109.47178 * 59.99878 * 17 15 13 34 34 H 1.08999 * 109.46829 * 179.97438 * 18 17 15 35 35 H 1.08990 * 109.47464 * 300.00226 * 18 17 15 36 36 H 1.08990 * 109.47427 * 59.99645 * 19 18 17 37 37 H 1.09001 * 109.46695 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47521 * 60.00034 * 21 20 19 39 39 H 1.09007 * 109.47379 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.47231 * 299.99865 * 21 20 19 41 41 H 1.09008 * 109.46990 * 60.00019 * 22 20 19 42 42 H 1.08999 * 109.47483 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47250 * 300.00114 * 22 20 19 44 44 H 1.08993 * 109.47752 * 299.99818 * 23 15 13 45 45 H 1.09001 * 109.47402 * 60.00311 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.6012 1.1776 6 1 5.2210 1.9225 1.1632 7 6 3.5579 1.3484 2.3889 8 7 2.3557 0.8181 2.4045 9 14 4.4169 1.7627 3.9950 10 1 5.2099 0.5919 4.4485 11 1 5.3209 2.9226 3.7881 12 1 3.4030 2.1029 5.0253 13 6 4.1794 1.2865 -1.1558 14 8 3.5781 1.2521 -2.2087 15 6 5.6806 1.1547 -1.1408 16 1 5.9748 0.4386 -0.3735 17 6 6.3090 2.5160 -0.8358 18 6 7.8330 2.3821 -0.8200 19 6 8.3161 1.8921 -2.1866 20 6 7.6877 0.5308 -2.4916 21 6 8.1712 0.0405 -3.8578 22 6 8.1003 -0.4742 -1.4143 23 6 6.1632 0.6649 -2.5076 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8901 31 1 1.9142 0.6420 3.2501 32 1 6.0148 3.2321 -1.6032 33 1 5.9651 2.8650 0.1378 34 1 8.2807 3.3520 -0.6032 35 1 8.1269 1.6662 -0.0526 36 1 8.0222 2.6081 -2.9540 37 1 9.4018 1.7963 -2.1752 38 1 9.2570 -0.0549 -3.8463 39 1 7.7232 -0.9291 -4.0754 40 1 7.8775 0.7564 -4.6256 41 1 7.7561 -0.1250 -0.4407 42 1 7.6523 -1.4439 -1.6313 43 1 9.1861 -0.5695 -1.4031 44 1 5.7156 -0.3048 -2.7249 45 1 5.8690 1.3810 -3.2749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339210122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = -60.304710 kcal Electronic energy + Delta-G solvation = -22317.360345 eV Core-core repulsion = 19333.874751 eV Total energy + Delta-G solvation = -2983.485594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70007 -37.81410 -35.07783 -33.06544 -32.08525 -31.24880 -30.29838 -27.09190 -26.23224 -25.55684 -24.64028 -22.41242 -21.10164 -20.21979 -18.92332 -17.97433 -16.95058 -15.98677 -14.79253 -14.55320 -14.26080 -14.24144 -13.91065 -13.60719 -13.50673 -13.20166 -12.74095 -12.57080 -12.25524 -11.93315 -11.78666 -11.65346 -11.45124 -11.28716 -11.22354 -11.00899 -10.83234 -10.71783 -10.55934 -10.53208 -10.37085 -10.28302 -10.17005 -9.85868 -9.64439 -9.51748 -9.42725 -8.76956 -8.16880 -7.58257 -6.25147 -3.90520 3.10309 3.20183 3.21654 3.97703 4.09304 4.76847 4.97785 5.07680 5.11466 5.19384 5.48073 5.60504 5.70690 5.78967 5.83798 5.92098 5.97071 6.03151 6.06045 6.07398 6.16182 6.22981 6.23909 6.27786 6.33436 6.36272 6.48008 6.58476 6.61322 6.64435 6.68673 6.75233 6.82856 6.91299 7.00654 7.05292 7.10473 7.16757 7.42061 7.58922 7.85731 7.92366 8.53240 9.12873 9.63113 10.03486 10.68706 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.007220 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.999913 B = 3877.430390 C = 4914.975321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.143 3.857 4 N -0.444 5.444 5 C -0.330 4.330 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.865 5.865 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.461 3.539 14 O -0.611 6.611 15 C -0.087 4.087 16 H 0.088 0.912 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.105 4.105 20 C -0.067 4.067 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.082 4.082 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 -0.018 -3.248 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.020 3.980 4 N -0.161 5.161 5 C -0.457 4.457 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.505 5.505 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.209 1.209 13 C 0.250 3.750 14 O -0.498 6.498 15 C -0.108 4.108 16 H 0.106 0.894 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.195 4.195 22 C -0.202 4.202 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.882 -0.074 -3.576 8.656 hybrid contribution 0.300 0.100 0.989 1.038 sum 8.182 0.026 -2.586 8.581 Atomic orbital electron populations 1.21573 0.97804 0.99572 1.00280 1.21833 0.93581 0.98689 1.01635 1.21175 0.80357 0.96627 0.99803 1.43757 1.05450 1.61134 1.05764 1.19921 0.98187 1.44609 0.83021 0.87871 1.25322 0.96337 0.96067 0.99453 1.70069 1.13351 1.40712 1.26334 0.86055 0.78922 0.78858 0.81613 1.20427 1.19556 1.20865 1.20212 0.89212 0.81664 0.83938 1.90503 1.70607 1.57400 1.31301 1.21010 0.93438 0.98215 0.98129 0.89389 1.21625 0.94143 0.96557 1.02899 1.21584 0.96292 1.00537 0.97215 1.21576 0.98934 0.96199 0.97549 1.20579 0.96057 0.95095 0.94956 1.21840 1.00190 1.00958 0.96562 1.21975 1.00138 0.98631 0.99415 1.21340 0.92378 1.01399 0.96906 0.94481 0.93000 0.94598 0.95340 0.88456 0.88605 0.95250 0.92366 0.92586 0.89954 0.92540 0.91697 0.92303 0.92721 0.93195 0.92852 0.92901 0.91601 0.92967 0.93401 0.92308 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.91 37.16 0.37 -2.29 16 2 C -0.12 -2.80 5.64 -26.73 -0.15 -2.95 16 3 C 0.14 3.57 4.53 -4.04 -0.02 3.55 16 4 N -0.44 -11.20 2.64 -114.81 -0.30 -11.50 16 5 C -0.33 -8.08 8.57 -14.93 -0.13 -8.21 16 6 H 0.10 2.37 4.54 -52.49 -0.24 2.13 16 7 C 0.03 0.77 5.19 -17.47 -0.09 0.68 16 8 N -0.87 -21.50 8.00 55.50 0.44 -21.05 16 9 Si 0.92 19.01 29.56 -169.99 -5.02 13.98 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 11 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.46 11.29 6.83 -10.98 -0.08 11.21 16 14 O -0.61 -16.54 15.66 5.54 0.09 -16.45 16 15 C -0.09 -1.72 1.43 -91.77 -0.13 -1.85 16 16 H 0.09 1.77 6.01 -51.93 -0.31 1.46 16 17 C -0.11 -2.03 4.88 -26.73 -0.13 -2.16 16 18 C -0.12 -1.70 5.65 -26.73 -0.15 -1.85 16 19 C -0.11 -1.39 4.73 -26.73 -0.13 -1.52 16 20 C -0.07 -0.94 0.77 -154.49 -0.12 -1.06 16 21 C -0.14 -1.70 8.47 37.15 0.31 -1.38 16 22 C -0.14 -1.95 7.78 37.16 0.29 -1.66 16 23 C -0.08 -1.46 3.40 -26.71 -0.09 -1.55 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.10 2.46 6.08 -51.92 -0.32 2.15 16 29 H 0.10 2.47 6.03 -51.93 -0.31 2.15 16 30 H 0.03 0.75 7.59 -51.93 -0.39 0.35 16 31 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.57 5.44 -51.93 -0.28 1.28 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.95 4.81 -51.92 -0.25 0.70 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -27.04 332.16 -7.94 -34.97 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.91 Total: 6.07 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.24 Total: -11.03 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.14 Total: -32.55 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.04 -7.94 -34.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339210122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.332 kcal (2) G-P(sol) polarization free energy of solvation -27.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds