Wall clock time and date at job start Mon Mar 30 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46959 * 2 1 4 4 H 1.09003 * 109.47491 * 305.00362 * 3 2 1 5 5 C 1.53001 * 109.47253 * 64.99726 * 3 2 1 6 6 C 1.53001 * 109.47350 * 185.00404 * 3 2 1 7 7 C 1.53001 * 109.47320 * 175.00075 * 6 3 2 8 8 C 1.50697 * 109.46819 * 179.97438 * 7 6 3 9 9 O 1.21287 * 120.00605 * 0.02562 * 8 7 6 10 10 N 1.34788 * 119.99485 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00087 * 0.02562 * 10 8 7 12 12 H 1.07996 * 119.99611 * 233.92551 * 11 10 8 13 13 C 1.38949 * 120.00195 * 53.92488 * 11 10 8 14 14 N 1.31412 * 119.99774 * 22.95788 * 13 11 10 15 15 Si 1.86793 * 120.00277 * 202.95868 * 13 11 10 16 16 H 1.48503 * 109.47253 * 59.99910 * 15 13 11 17 17 H 1.48500 * 109.47485 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46954 * 300.00149 * 15 13 11 19 19 C 1.46498 * 119.99398 * 180.02562 * 10 8 7 20 20 C 1.54270 * 110.03176 * 239.36301 * 19 10 8 21 21 C 1.54964 * 104.15934 * 217.13955 * 20 19 10 22 22 C 1.54889 * 102.77693 * 37.89132 * 21 20 19 23 23 C 1.53880 * 110.02681 * 122.15172 * 19 10 8 24 24 H 1.09000 * 109.47375 * 299.99684 * 1 2 3 25 25 H 1.08994 * 109.47667 * 60.00385 * 1 2 3 26 26 H 1.09011 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46950 * 240.00042 * 2 1 3 28 28 H 1.08995 * 109.47272 * 120.00278 * 2 1 3 29 29 H 1.09003 * 109.46858 * 60.00092 * 5 3 2 30 30 H 1.08998 * 109.47276 * 300.00668 * 5 3 2 31 31 H 1.08995 * 109.47230 * 179.97438 * 5 3 2 32 32 H 1.09005 * 109.46684 * 294.99479 * 6 3 2 33 33 H 1.08993 * 109.46979 * 54.99521 * 6 3 2 34 34 H 1.08994 * 109.47132 * 299.99733 * 7 6 3 35 35 H 1.09007 * 109.47076 * 59.99899 * 7 6 3 36 36 H 0.97005 * 120.00202 * 174.68007 * 14 13 11 37 37 H 1.08994 * 110.01843 * 0.76157 * 19 10 8 38 38 H 1.08997 * 110.48751 * 335.79196 * 20 19 10 39 39 H 1.09005 * 110.47931 * 98.43187 * 20 19 10 40 40 H 1.09003 * 110.72236 * 279.57567 * 21 20 19 41 41 H 1.08997 * 110.92019 * 156.29791 * 21 20 19 42 42 H 1.09002 * 110.48747 * 203.40121 * 22 21 20 43 43 H 1.09001 * 110.59830 * 80.81336 * 22 21 20 44 44 H 1.09005 * 110.02953 * 238.56355 * 23 19 10 45 45 H 1.09001 * 110.03439 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 4.0644 2.8851 -0.2512 8 6 5.5663 2.8869 -0.3745 9 8 6.1771 1.8391 -0.3637 10 7 6.2309 4.0531 -0.4978 11 6 5.5405 5.2375 -0.5106 12 1 5.6803 5.9352 -1.3230 13 6 4.6610 5.5402 0.5216 14 7 4.8015 4.9645 1.6945 15 14 3.2790 6.7653 0.2421 16 1 2.3975 6.2768 -0.8487 17 1 2.4878 6.9125 1.4901 18 1 3.8532 8.0812 -0.1374 19 6 7.6909 4.0548 -0.6183 20 6 8.3154 4.8657 0.5360 21 6 9.5201 5.5890 -0.1173 22 6 8.9763 5.9629 -1.5186 23 6 8.1112 4.7518 -1.9242 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0698 1.5875 2.1492 30 1 0.5488 2.1251 1.3969 31 1 1.9988 3.1540 1.3075 32 1 4.0029 0.9837 0.7596 33 1 3.8569 0.8801 -1.0113 34 1 3.6263 3.3458 -1.1365 35 1 3.7722 3.4494 0.6345 36 1 4.2371 5.2319 2.4368 37 1 8.0678 3.0322 -0.6029 38 1 7.5998 5.5907 0.9237 39 1 8.6539 4.2001 1.3302 40 1 10.3743 4.9171 -0.2010 41 1 9.7881 6.4839 0.4444 42 1 9.7973 6.0982 -2.2228 43 1 8.3678 6.8657 -1.4655 44 1 8.6928 4.0677 -2.5421 45 1 7.2288 5.0884 -2.4685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353270377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:22 Heat of formation + Delta-G solvation = -84.415613 kcal Electronic energy + Delta-G solvation = -21847.197015 eV Core-core repulsion = 18862.665895 eV Total energy + Delta-G solvation = -2984.531121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81177 -38.68488 -37.69060 -35.94682 -33.40764 -32.77227 -29.75373 -29.47131 -28.52819 -26.89727 -26.12597 -23.44421 -21.42842 -21.16629 -20.99957 -20.64878 -18.33829 -17.45882 -17.09255 -16.38852 -16.21139 -15.99660 -15.77908 -15.22807 -14.87919 -14.42534 -14.25191 -14.11771 -14.05430 -13.53686 -13.29216 -13.03374 -12.79503 -12.73743 -12.60518 -12.42660 -12.28675 -12.24686 -12.09590 -11.88205 -11.82910 -11.74851 -11.44902 -11.41179 -11.35478 -11.30102 -11.28563 -10.58766 -10.13838 -9.12644 -8.27542 -6.12492 1.43496 1.49663 1.55709 2.18898 2.36361 2.99577 3.07665 3.86449 3.90013 3.92546 4.00698 4.04427 4.19742 4.42438 4.51073 4.58923 4.64888 4.65146 4.70950 4.76070 4.77161 4.79708 4.83739 4.91220 4.94760 5.07046 5.08428 5.10868 5.16294 5.18952 5.23486 5.24311 5.27711 5.30160 5.43372 5.47646 5.51186 5.57156 5.58795 5.62804 5.68638 6.18490 6.74922 7.05834 7.71860 8.18208 8.76603 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.006325 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.356590 B = 4425.933727 C = 5344.999425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.086 4.086 4 H 0.072 0.928 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.125 4.125 8 C 0.488 3.512 9 O -0.650 6.650 10 N -0.451 5.451 11 C -0.350 4.350 12 H 0.083 0.917 13 C 0.028 3.972 14 N -0.878 5.878 15 Si 0.955 3.045 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.118 3.882 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.121 4.121 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 0.063 -3.296 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.090 0.910 5 C -0.201 4.201 6 C -0.124 4.124 7 C -0.165 4.165 8 C 0.280 3.720 9 O -0.540 6.540 10 N -0.170 5.170 11 C -0.477 4.477 12 H 0.100 0.900 13 C -0.177 4.177 14 N -0.514 5.514 15 Si 0.779 3.221 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.191 1.191 19 C 0.014 3.986 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.439 -0.462 -3.126 4.670 hybrid contribution -0.364 0.507 0.385 0.733 sum -3.803 0.044 -2.741 4.688 Atomic orbital electron populations 1.21791 0.94356 1.02146 1.02183 1.21534 0.96995 0.95063 1.01764 1.21150 0.93537 0.97246 0.98521 0.91001 1.21866 1.01618 0.99716 0.96884 1.21293 0.95552 0.95159 1.00445 1.21685 0.91736 0.98508 1.04524 1.21115 0.91198 0.82808 0.76868 1.90424 1.71479 1.33404 1.58692 1.43638 1.03913 1.05211 1.64204 1.19184 1.22567 0.98372 1.07581 0.89972 1.26161 1.00094 0.97932 0.93522 1.70082 1.38125 1.42509 1.00646 0.85572 0.79189 0.79196 0.78165 1.18534 1.20706 1.19077 1.21798 0.83204 0.97905 0.95722 1.22475 0.97669 0.98681 0.96622 1.22420 0.96362 0.99976 0.96151 1.22218 0.98671 0.96908 0.96651 1.22332 0.99585 0.97793 0.96180 0.92246 0.92438 0.91769 0.92124 0.92489 0.93494 0.90678 0.94355 0.94404 0.93339 0.90798 0.87547 0.91792 0.93136 0.92006 0.94598 0.90741 0.90631 0.89590 0.92102 0.91598 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.67 71.98 0.70 -2.37 16 2 C -0.12 -3.04 5.40 30.59 0.17 -2.88 16 3 C -0.09 -2.74 2.39 -10.79 -0.03 -2.76 16 4 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 5 C -0.14 -4.51 8.70 71.98 0.63 -3.88 16 6 C -0.09 -3.52 3.97 30.60 0.12 -3.40 16 7 C -0.13 -5.83 3.88 29.85 0.12 -5.72 16 8 C 0.49 26.25 7.19 87.65 0.63 26.88 16 9 O -0.65 -38.06 15.33 -3.05 -0.05 -38.11 16 10 N -0.45 -23.06 2.35 -609.37 -1.43 -24.50 16 11 C -0.35 -17.29 6.91 84.04 0.58 -16.71 16 12 H 0.08 3.96 7.18 -2.91 -0.02 3.94 16 13 C 0.03 1.36 3.46 84.93 0.29 1.66 16 14 N -0.88 -45.43 11.69 21.66 0.25 -45.18 16 15 Si 0.96 38.00 29.61 68.60 2.03 40.03 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 C 0.12 5.41 3.29 45.72 0.15 5.56 16 20 C -0.12 -4.94 6.42 31.70 0.20 -4.74 16 21 C -0.11 -3.52 6.91 31.91 0.22 -3.30 16 22 C -0.11 -3.28 6.83 31.67 0.22 -3.07 16 23 C -0.12 -4.51 6.25 31.32 0.20 -4.31 16 24 H 0.06 1.19 6.56 -2.39 -0.02 1.17 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.92 6.56 -2.39 -0.02 1.90 16 31 H 0.04 1.36 6.56 -2.39 -0.02 1.34 16 32 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 34 H 0.07 3.31 8.10 -2.39 -0.02 3.29 16 35 H 0.11 5.18 3.52 -2.38 -0.01 5.17 16 36 H 0.27 13.40 8.32 -92.70 -0.77 12.63 16 37 H 0.05 2.53 6.94 -2.39 -0.02 2.52 16 38 H 0.06 2.99 7.09 -2.39 -0.02 2.97 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.06 2.31 6.83 -2.39 -0.02 2.29 16 Total: -1.00 -60.30 343.17 5.93 -54.37 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.93 Total: 32.42 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.19 Total: -19.04 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.18 Total: -69.68 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.05 Total: -38.11 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -60.30 5.93 -54.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353270377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.045 kcal (2) G-P(sol) polarization free energy of solvation -60.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds