Wall clock time and date at job start Mon Mar 30 2020 00:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.08999 * 109.46774 * 305.00291 * 3 2 1 5 5 C 1.53000 * 109.46836 * 65.00191 * 3 2 1 6 6 C 1.53000 * 109.46836 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47475 * 299.99999 * 6 5 3 8 8 C 1.53000 * 109.47198 * 59.99606 * 7 6 5 9 9 C 1.53000 * 109.47229 * 300.00545 * 8 7 6 10 10 H 1.08990 * 109.46997 * 300.00116 * 9 8 7 11 11 C 1.50694 * 109.46936 * 179.97438 * 9 8 7 12 12 O 1.21288 * 120.00410 * 247.04180 * 11 9 8 13 13 N 1.34781 * 120.00200 * 67.04344 * 11 9 8 14 14 C 1.46490 * 120.00372 * 184.62178 * 13 11 9 15 15 C 1.53003 * 109.47149 * 85.01416 * 14 13 11 16 16 C 1.46497 * 119.99672 * 4.62623 * 13 11 9 17 17 C 1.50696 * 109.47472 * 95.36823 * 16 13 11 18 18 H 1.08006 * 120.00068 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00459 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99449 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47224 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47296 * 119.99969 * 21 19 17 24 24 H 1.48496 * 109.46792 * 239.99969 * 21 19 17 25 25 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47202 * 299.99833 * 1 2 3 27 27 H 1.08998 * 109.47267 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.46984 * 239.99729 * 2 1 3 29 29 H 1.09001 * 109.47079 * 120.00384 * 2 1 3 30 30 H 1.08990 * 109.47730 * 59.99957 * 5 3 2 31 31 H 1.09007 * 109.47135 * 299.99454 * 5 3 2 32 32 H 1.09001 * 109.47470 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.47269 * 60.00177 * 6 5 3 34 34 H 1.08997 * 109.47307 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46539 * 300.00109 * 7 6 5 36 36 H 1.09002 * 109.46543 * 60.00436 * 8 7 6 37 37 H 1.08996 * 109.46981 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47588 * 205.01704 * 14 13 11 39 39 H 1.09002 * 109.47451 * 325.01300 * 14 13 11 40 40 H 1.09003 * 109.46930 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47000 * 299.99842 * 15 14 13 42 42 H 1.08997 * 109.46994 * 60.00356 * 15 14 13 43 43 H 1.09002 * 109.47277 * 215.37509 * 16 13 11 44 44 H 1.09005 * 109.47234 * 335.37226 * 16 13 11 45 45 H 0.97003 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1459 3.5687 1.3077 7 6 3.6707 3.5701 1.1822 8 6 4.0755 2.8860 -0.1251 9 6 3.5649 1.4437 -0.1254 10 1 3.9990 0.9044 0.7164 11 6 3.9630 0.7702 -1.4133 12 8 3.1136 0.4468 -2.2165 13 7 5.2631 0.5270 -1.6728 14 6 5.6593 -0.0347 -2.9664 15 6 5.8190 1.0951 -3.9857 16 6 6.2800 0.8244 -0.6610 17 6 6.5838 -0.4231 0.1277 18 1 6.0711 -1.3456 -0.1019 19 6 7.5172 -0.3874 1.1420 20 7 8.1427 0.7354 1.4206 21 14 7.8944 -1.9340 2.1192 22 1 7.0626 -3.0550 1.6123 23 1 9.3316 -2.2762 1.9692 24 1 7.5882 -1.7003 3.5533 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0698 1.5875 2.1492 31 1 0.5489 2.1252 1.3969 32 1 1.8572 4.0563 2.2388 33 1 1.7116 4.1081 0.4659 34 1 4.0344 4.5976 1.1819 35 1 4.1049 3.0307 2.0241 36 1 3.6412 3.4253 -0.9669 37 1 5.1618 2.8865 -0.2142 38 1 6.6064 -0.5632 -2.8584 39 1 4.8931 -0.7293 -3.3110 40 1 6.1133 0.6771 -4.9483 41 1 4.8718 1.6235 -4.0938 42 1 6.5852 1.7896 -3.6412 43 1 7.1884 1.1749 -1.1510 44 1 5.9084 1.5978 0.0113 45 1 8.7991 0.7607 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355035708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:19 Heat of formation + Delta-G solvation = -85.681439 kcal Electronic energy + Delta-G solvation = -22291.893301 eV Core-core repulsion = 19307.307290 eV Total energy + Delta-G solvation = -2984.586011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49355 -38.86740 -36.96994 -34.77188 -34.65277 -32.84440 -31.07425 -29.89288 -28.87603 -25.30398 -25.03444 -24.49530 -23.14450 -21.55034 -20.81890 -19.73129 -18.61197 -17.80242 -17.25045 -16.35375 -16.11286 -15.82651 -15.69772 -15.04703 -14.84274 -14.61491 -14.45335 -14.12802 -13.91082 -13.72516 -13.46204 -13.28358 -13.12806 -13.02309 -12.67911 -12.60883 -12.45975 -12.33055 -12.22319 -12.04645 -11.93811 -11.78231 -11.61888 -11.48077 -11.34252 -11.22407 -10.81855 -10.60573 -10.20583 -9.39651 -8.20546 -6.34394 1.37387 1.40733 1.50950 1.82496 2.33295 2.47502 3.08774 3.65525 3.73757 3.84594 4.09249 4.19783 4.26924 4.38546 4.40182 4.42514 4.50400 4.53671 4.55700 4.59285 4.67954 4.78979 4.82578 4.87590 4.94668 4.98036 5.05008 5.08784 5.13593 5.21385 5.23954 5.26256 5.28935 5.32589 5.36860 5.44638 5.45779 5.61710 5.66462 5.69086 5.91338 6.08108 6.61866 6.84233 7.32655 7.46132 8.84572 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.007423 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.076067 B = 3771.348486 C = 4333.999589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C -0.056 4.056 4 H 0.065 0.935 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.110 4.110 9 C -0.094 4.094 10 H 0.078 0.922 11 C 0.515 3.485 12 O -0.587 6.587 13 N -0.601 5.601 14 C 0.108 3.892 15 C -0.149 4.149 16 C 0.240 3.760 17 C -0.548 4.548 18 H 0.045 0.955 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.013 0.987 44 H 0.056 0.944 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 4.647 -0.883 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C -0.074 4.074 4 H 0.084 0.916 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.115 4.115 10 H 0.097 0.903 11 C 0.305 3.695 12 O -0.470 6.470 13 N -0.331 5.331 14 C -0.015 4.015 15 C -0.208 4.208 16 C 0.119 3.881 17 C -0.587 4.587 18 H 0.064 0.936 19 C -0.176 4.176 20 N -0.555 5.555 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.202 1.202 24 H -0.201 1.201 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.186 4.554 -1.190 11.221 hybrid contribution 0.939 -1.077 0.413 1.488 sum -9.246 3.477 -0.777 9.909 Atomic orbital electron populations 1.21696 0.94136 1.01634 1.02083 1.21680 0.97396 0.96544 1.01060 1.20876 0.91439 0.96384 0.98749 0.91643 1.21644 1.01525 0.95828 0.95839 1.21535 0.94429 0.96413 1.02675 1.21493 0.97035 1.00532 0.96001 1.21623 1.00728 0.92952 0.99448 1.21276 0.98150 0.97329 0.94769 0.90331 1.20965 0.81729 0.78241 0.88587 1.90514 1.50347 1.55301 1.50827 1.48294 1.07166 1.61465 1.16203 1.21346 1.00248 0.96484 0.83392 1.21988 1.01139 0.98542 0.99099 1.19404 0.86123 0.96334 0.86196 1.21706 1.22954 0.96628 1.17381 0.93619 1.25586 0.95366 0.98949 0.97740 1.70001 1.26844 1.27116 1.31505 0.85592 0.78052 0.79872 0.78693 1.19959 1.20196 1.20085 0.92796 0.91150 0.93033 0.93095 0.93380 0.92486 0.89758 0.90152 0.91439 0.90557 0.92813 0.91850 0.92024 0.90833 0.91956 0.89559 0.93746 0.92914 0.96864 0.92660 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.67 71.98 0.70 -2.79 16 2 C -0.13 -4.19 5.14 30.59 0.16 -4.04 16 3 C -0.06 -1.75 1.34 -10.79 -0.01 -1.76 16 4 H 0.07 2.13 8.02 -2.39 -0.02 2.12 16 5 C -0.11 -2.77 4.96 30.59 0.15 -2.62 16 6 C -0.11 -2.57 5.92 30.59 0.18 -2.38 16 7 C -0.11 -3.11 5.92 30.59 0.18 -2.93 16 8 C -0.11 -3.67 4.82 30.59 0.15 -3.53 16 9 C -0.09 -3.50 1.22 -11.54 -0.01 -3.52 16 10 H 0.08 3.32 7.67 -2.39 -0.02 3.30 16 11 C 0.51 21.96 6.48 87.65 0.57 22.53 16 12 O -0.59 -26.51 13.61 -3.05 -0.04 -26.55 16 13 N -0.60 -26.29 2.47 -826.18 -2.04 -28.33 16 14 C 0.11 4.19 6.13 86.38 0.53 4.72 16 15 C -0.15 -4.81 10.20 71.98 0.73 -4.08 16 16 C 0.24 11.66 4.59 85.63 0.39 12.05 16 17 C -0.55 -29.23 9.38 25.60 0.24 -28.99 16 18 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 19 C 0.02 1.28 5.46 84.66 0.46 1.74 16 20 N -0.92 -50.24 13.29 21.45 0.28 -49.95 16 21 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.48 6.56 -2.39 -0.02 1.46 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.99 5.68 -2.38 -0.01 1.98 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.74 6.57 -2.38 -0.02 1.73 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.06 2.34 5.40 -2.39 -0.01 2.32 16 38 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 39 H 0.06 2.44 7.51 -2.39 -0.02 2.43 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 44 H 0.06 2.71 4.00 -2.38 -0.01 2.70 16 45 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -59.23 342.83 5.58 -53.65 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.93 Total: 22.40 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.41 Total: -15.58 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.75 Total: -78.28 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.55 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.23 5.58 -53.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355035708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.034 kcal (2) G-P(sol) polarization free energy of solvation -59.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds