Wall clock time and date at job start Mon Mar 30 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46642 * 2 1 4 4 N 1.46495 * 109.47314 * 119.99638 * 2 1 3 5 5 C 1.46500 * 120.00269 * 303.56146 * 4 2 1 6 6 C 1.50705 * 109.47144 * 269.99848 * 5 4 2 7 7 H 1.08002 * 119.99697 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99957 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47051 * 60.00085 * 10 8 6 12 12 H 1.48499 * 109.47175 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46988 * 299.99859 * 10 8 6 14 14 C 1.34774 * 119.99823 * 123.55956 * 4 2 1 15 15 O 1.21287 * 120.00248 * 174.34174 * 14 4 2 16 16 C 1.50705 * 120.00245 * 354.61250 * 14 4 2 17 17 C 1.52995 * 109.47454 * 182.08847 * 16 14 4 18 18 C 1.52997 * 109.47238 * 300.00524 * 17 16 14 19 19 C 1.53005 * 109.46992 * 60.00368 * 17 16 14 20 20 C 1.52995 * 109.47230 * 180.02562 * 17 16 14 21 21 C 1.52997 * 117.50216 * 248.75159 * 20 17 16 22 22 C 1.52999 * 117.50225 * 180.09063 * 20 17 16 23 23 H 1.09001 * 109.47410 * 296.02738 * 1 2 3 24 24 H 1.08993 * 109.47163 * 56.03806 * 1 2 3 25 25 H 1.09005 * 109.46806 * 176.03497 * 1 2 3 26 26 H 1.08993 * 109.47023 * 240.00233 * 2 1 3 27 27 H 1.08994 * 109.46832 * 184.33029 * 3 2 1 28 28 H 1.09004 * 109.46837 * 304.33338 * 3 2 1 29 29 H 1.08997 * 109.47175 * 64.32889 * 3 2 1 30 30 H 1.09002 * 109.47009 * 30.00009 * 5 4 2 31 31 H 1.09001 * 109.46879 * 149.99678 * 5 4 2 32 32 H 0.96996 * 119.99633 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46862 * 302.09844 * 16 14 4 34 34 H 1.09005 * 109.46681 * 62.09128 * 16 14 4 35 35 H 1.09003 * 109.47221 * 59.99967 * 18 17 16 36 36 H 1.08999 * 109.46824 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.46802 * 299.99286 * 18 17 16 38 38 H 1.09004 * 109.46791 * 59.99878 * 19 17 16 39 39 H 1.08999 * 109.47215 * 179.97438 * 19 17 16 40 40 H 1.08997 * 109.47061 * 300.00322 * 19 17 16 41 41 H 1.09007 * 115.54859 * 34.41960 * 20 17 16 42 42 H 1.08999 * 117.49918 * 359.97438 * 21 20 17 43 43 H 1.09004 * 117.50333 * 145.02128 * 21 20 17 44 44 H 1.09002 * 117.50165 * 214.98737 * 22 20 17 45 45 H 1.09004 * 117.49693 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6014 -0.2371 2.5253 6 6 2.5746 0.7960 3.0320 7 1 3.4196 1.0854 2.4248 8 6 2.3864 1.3715 4.2706 9 7 1.3572 1.0193 5.0098 10 14 3.5932 2.6514 4.8989 11 1 3.6191 3.8070 3.9667 12 1 3.1697 3.1120 6.2457 13 1 4.9497 2.0532 4.9837 14 6 2.8514 -1.7429 1.0738 15 8 3.3369 -2.2502 2.0627 16 6 3.1843 -2.2857 -0.2921 17 6 4.1008 -3.5022 -0.1482 18 6 5.3899 -3.0880 0.5642 19 6 3.3902 -4.5821 0.6703 20 6 4.4393 -4.0527 -1.5349 21 6 3.8573 -5.4156 -1.9153 22 6 5.3500 -5.2801 -1.6048 23 1 -0.3634 0.4509 0.9234 24 1 -0.3633 0.5741 -0.8523 25 1 -0.3633 -1.0253 -0.0711 26 1 1.8933 -0.5138 -0.8899 27 1 3.1271 1.4436 -0.0776 28 1 1.6145 1.9783 -0.8487 29 1 1.7413 1.9335 0.9262 30 1 0.6053 0.2014 2.4637 31 1 1.5831 -1.0855 3.2094 32 1 1.2250 1.4239 5.8814 33 1 2.2658 -2.5806 -0.7996 34 1 3.6905 -1.5163 -0.8752 35 1 5.1491 -2.6956 1.5522 36 1 6.0427 -3.9549 0.6672 37 1 5.8962 -2.3188 -0.0189 38 1 2.4718 -4.8771 0.1628 39 1 4.0430 -5.4490 0.7725 40 1 3.1494 -4.1896 1.6582 41 1 4.5362 -3.3084 -2.3254 42 1 3.2336 -5.9202 -1.1775 43 1 3.5717 -5.5682 -2.9562 44 1 6.0459 -5.3435 -2.4414 45 1 5.7078 -5.6957 -0.6627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405763426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:50 Heat of formation + Delta-G solvation = -39.704770 kcal Electronic energy + Delta-G solvation = -21911.001579 eV Core-core repulsion = 18928.409266 eV Total energy + Delta-G solvation = -2982.592313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27990 -39.34208 -37.47805 -34.96788 -34.31611 -32.35631 -30.33204 -28.25945 -28.18143 -27.89081 -25.09219 -23.89127 -22.98120 -22.53329 -19.73654 -18.96473 -18.56616 -18.13615 -16.90662 -16.65058 -16.32489 -16.01023 -15.49590 -14.81441 -14.79219 -14.51063 -14.33135 -14.23404 -13.95773 -13.37818 -13.30951 -13.16111 -12.84750 -12.76528 -12.67748 -12.52550 -12.45504 -12.25851 -12.10429 -12.04077 -11.96479 -11.78079 -11.58545 -11.55597 -11.37770 -11.02606 -10.66816 -10.58030 -10.11331 -9.29139 -8.16578 -6.27873 1.35562 1.39294 1.46144 1.96795 2.35150 2.50798 3.01985 3.12573 3.66991 3.78670 4.01186 4.06264 4.12493 4.27085 4.32527 4.36193 4.40735 4.47068 4.64871 4.69055 4.83100 4.87214 4.88627 4.90153 4.90976 5.02883 5.06354 5.09341 5.14788 5.16175 5.18443 5.20773 5.28353 5.38534 5.45555 5.47918 5.59650 5.60618 5.65597 5.72559 5.99407 6.16365 6.78737 6.95967 7.36528 7.65977 8.89937 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.005456 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.540134 B = 5130.575856 C = 5679.441477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 C -0.156 4.156 4 N -0.602 5.602 5 C 0.265 3.735 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.493 3.507 15 O -0.577 6.577 16 C -0.117 4.117 17 C -0.011 4.011 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.178 4.178 22 C -0.178 4.178 23 H 0.036 0.964 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.024 0.976 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 -7.158 -18.347 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.333 5.333 5 C 0.144 3.856 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.283 3.717 15 O -0.458 6.458 16 C -0.157 4.157 17 C -0.011 4.011 18 C -0.204 4.204 19 C -0.205 4.205 20 C -0.163 4.163 21 C -0.215 4.215 22 C -0.215 4.215 23 H 0.055 0.945 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.132 0.868 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.135 0.865 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.689 -7.364 -17.669 19.331 hybrid contribution 0.447 0.765 1.296 1.570 sum 3.136 -6.600 -16.374 17.930 Atomic orbital electron populations 1.22122 0.94513 1.02374 1.02485 1.21360 0.95095 0.93774 0.87406 1.22128 1.00574 0.96228 1.02454 1.48395 1.46553 1.30406 1.07981 1.18601 0.94613 0.92910 0.79485 1.21623 1.10297 1.21881 1.02109 0.93067 1.25765 0.97269 0.99309 0.96857 1.70046 1.30461 1.44677 1.11991 0.85619 0.78891 0.79442 0.77771 1.18636 1.20617 1.20651 1.21357 0.78141 0.79731 0.92479 1.90540 1.52225 1.60739 1.42254 1.21774 1.02183 0.98747 0.92999 1.19686 0.94276 0.93491 0.93651 1.22009 0.96579 1.00772 1.01078 1.22093 0.99933 0.97948 1.00498 1.22269 1.05634 0.91732 0.96621 1.23197 0.96185 0.99339 1.02795 1.22967 0.93696 1.01820 1.03048 0.94480 0.88732 0.92272 0.86757 0.93745 0.89383 0.93782 0.95822 0.99215 0.92740 0.87168 0.87600 0.93127 0.92729 0.93026 0.92064 0.92672 0.93534 0.86499 0.88740 0.87520 0.87675 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 9.19 71.98 0.66 -3.70 16 2 C 0.13 3.87 3.17 45.00 0.14 4.01 16 3 C -0.16 -4.91 8.71 71.98 0.63 -4.28 16 4 N -0.60 -25.16 2.39 -802.13 -1.91 -27.08 16 5 C 0.27 14.26 4.63 85.63 0.40 14.66 16 6 C -0.52 -29.86 7.72 25.60 0.20 -29.67 16 7 H 0.05 2.93 7.60 -2.91 -0.02 2.91 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 10 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 C 0.49 20.00 7.06 87.66 0.62 20.62 16 15 O -0.58 -28.73 10.99 -3.05 -0.03 -28.76 16 16 C -0.12 -3.22 3.07 29.85 0.09 -3.13 16 17 C -0.01 -0.28 0.62 -52.18 -0.03 -0.31 16 18 C -0.15 -4.55 8.02 71.98 0.58 -3.97 16 19 C -0.15 -4.31 6.78 71.98 0.49 -3.82 16 20 C -0.14 -2.81 5.14 -10.80 -0.06 -2.87 16 21 C -0.18 -3.02 9.57 30.62 0.29 -2.73 16 22 C -0.18 -3.17 9.38 30.62 0.29 -2.89 16 23 H 0.04 1.27 6.38 -2.39 -0.02 1.26 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.11 2.62 5.78 -2.39 -0.01 2.60 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 30 H 0.02 1.31 6.17 -2.39 -0.01 1.29 16 31 H -0.01 -0.64 7.51 -2.39 -0.02 -0.66 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.11 2.47 7.85 -2.38 -0.02 2.45 16 34 H 0.11 2.48 7.73 -2.38 -0.02 2.46 16 35 H 0.05 2.03 5.43 -2.39 -0.01 2.02 16 36 H 0.05 1.52 7.29 -2.39 -0.02 1.51 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.56 6.97 -2.38 -0.02 1.55 16 39 H 0.05 1.46 7.07 -2.39 -0.02 1.45 16 40 H 0.05 1.77 5.60 -2.39 -0.01 1.76 16 41 H 0.12 1.93 8.11 -2.38 -0.02 1.91 16 42 H 0.09 1.73 5.85 -2.39 -0.01 1.72 16 43 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.66 7.07 -2.39 -0.02 1.64 16 Total: -1.00 -70.96 340.40 6.07 -64.89 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.95 Total: 17.18 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.76 Total: -17.25 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.63 Total: -83.82 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.03 Total: -28.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.96 6.07 -64.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405763426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.184 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds