Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.54217 * 2 1 4 4 C 1.54895 * 110.48214 * 122.61365 * 2 1 3 5 5 C 1.54894 * 102.74526 * 156.61875 * 4 2 1 6 6 C 1.54263 * 104.19606 * 322.05581 * 5 4 2 7 7 H 1.09000 * 110.03302 * 264.27532 * 6 5 4 8 8 C 1.53004 * 110.03098 * 142.89777 * 6 5 4 9 9 C 1.50700 * 109.47208 * 66.45103 * 8 6 5 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47258 * 300.00045 * 13 12 11 15 15 C 1.52995 * 109.47338 * 60.00083 * 13 12 11 16 16 C 1.50702 * 109.47525 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99441 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00641 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99481 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00577 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47514 * 89.99052 * 20 18 16 22 22 H 1.48499 * 109.47117 * 209.99801 * 20 18 16 23 23 H 1.48502 * 109.46524 * 329.99520 * 20 18 16 24 24 C 1.53868 * 106.59842 * 23.61193 * 6 5 4 25 25 H 1.08994 * 109.46841 * 298.84686 * 1 2 3 26 26 H 1.09004 * 109.46546 * 58.84014 * 1 2 3 27 27 H 1.08996 * 109.46973 * 178.84277 * 1 2 3 28 28 H 1.08992 * 110.75791 * 38.30457 * 4 2 1 29 29 H 1.08999 * 110.75454 * 274.93071 * 4 2 1 30 30 H 1.09003 * 110.48110 * 203.37369 * 5 4 2 31 31 H 1.09000 * 110.59778 * 80.78987 * 5 4 2 32 32 H 1.09009 * 109.46730 * 306.45009 * 8 6 5 33 33 H 1.08998 * 109.46846 * 186.45554 * 8 6 5 34 34 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 35 35 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 36 36 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 37 37 H 1.08998 * 109.46912 * 59.99446 * 14 13 12 38 38 H 1.08994 * 109.47328 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.46697 * 300.00044 * 14 13 12 40 40 H 1.09003 * 109.47465 * 59.99650 * 15 13 12 41 41 H 1.09001 * 109.47749 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.46864 * 300.00020 * 15 13 12 43 43 H 0.97000 * 120.00289 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.03099 * 119.28427 * 24 6 5 45 45 H 1.08999 * 110.03209 * 240.71246 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0721 -0.7821 1.2222 5 6 3.4907 -1.1981 0.7600 6 6 3.3165 -1.5406 -0.7340 7 1 3.1700 -2.6138 -0.8564 8 6 4.5466 -1.0867 -1.5226 9 6 5.7420 -1.9022 -1.1020 10 8 5.6221 -2.7615 -0.2545 11 7 6.9457 -1.6724 -1.6632 12 6 8.1090 -2.4611 -1.2499 13 6 9.3401 -2.0038 -2.0349 14 6 9.0938 -2.2039 -3.5317 15 6 9.6024 -0.5228 -1.7548 16 6 10.5367 -2.8155 -1.6104 17 1 10.4299 -3.5807 -0.8557 18 6 11.7681 -2.5806 -2.1845 19 7 11.8982 -1.6484 -3.1030 20 14 13.2512 -3.5872 -1.6587 21 1 13.3589 -4.7949 -2.5159 22 1 14.4813 -2.7676 -1.8012 23 1 13.0923 -3.9991 -0.2409 24 6 2.0700 -0.7789 -1.2172 25 1 -0.3633 0.4958 0.9001 26 1 -0.3632 0.5318 -0.8795 27 1 -0.3633 -1.0274 -0.0208 28 1 1.4580 -1.6600 1.4223 29 1 2.1251 -0.1382 2.1002 30 1 3.8315 -2.0723 1.3148 31 1 4.1916 -0.3724 0.8829 32 1 4.7375 -0.0323 -1.3228 33 1 4.3672 -1.2278 -2.5884 34 1 7.0416 -0.9849 -2.3407 35 1 8.2843 -2.3188 -0.1836 36 1 7.9224 -3.5162 -1.4499 37 1 8.2282 -1.6172 -3.8391 38 1 9.9710 -1.8786 -4.0910 39 1 8.9069 -3.2591 -3.7313 40 1 9.7779 -0.3801 -0.6885 41 1 10.4792 -0.1968 -2.3144 42 1 8.7368 0.0640 -2.0623 43 1 12.7643 -1.4833 -3.5073 44 1 2.3413 -0.0858 -2.0135 45 1 1.3176 -1.4823 -1.5740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457991810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -92.869938 kcal Electronic energy + Delta-G solvation = -20870.242062 eV Core-core repulsion = 17885.344334 eV Total energy + Delta-G solvation = -2984.897728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96072 -39.23372 -37.98730 -34.95034 -33.52990 -32.64453 -30.51766 -28.43686 -27.56642 -27.37315 -26.39911 -24.79957 -21.76491 -21.05540 -20.60895 -20.15957 -18.39794 -17.66926 -16.79442 -16.64246 -16.49667 -15.90724 -15.76399 -14.88896 -14.73684 -14.47675 -14.40877 -14.00300 -13.95711 -13.71574 -13.31109 -13.11658 -13.08610 -12.69276 -12.61307 -12.54747 -12.24946 -12.14613 -11.94730 -11.64236 -11.59888 -11.50685 -11.48758 -11.40913 -11.25003 -11.18599 -10.75366 -10.58241 -10.40564 -9.87775 -8.03427 -6.19257 1.41202 1.44015 1.52310 1.79959 2.37460 2.53560 3.19963 3.67852 3.71194 3.83138 4.09588 4.25399 4.37658 4.45531 4.51469 4.60430 4.64175 4.69805 4.71989 4.77800 4.82423 4.84551 4.99606 5.00524 5.05678 5.06493 5.12943 5.16116 5.19158 5.22519 5.25870 5.38030 5.40473 5.44269 5.60228 5.63351 5.64551 5.66159 5.66918 6.15035 6.21583 6.43108 6.75966 6.85148 7.42607 7.48539 8.95430 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049208 B = 0.003318 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.874471 B = 8437.270793 C = 8647.171029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.056 0.944 8 C -0.126 4.126 9 C 0.498 3.502 10 O -0.590 6.590 11 N -0.715 5.715 12 C 0.149 3.851 13 C 0.052 3.948 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.531 4.531 17 H 0.042 0.958 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.944 3.056 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.277 1.277 24 C -0.111 4.111 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.408 0.592 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.261 0.739 44 H 0.081 0.919 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 6.577 1.189 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.166 4.166 9 C 0.286 3.714 10 O -0.471 6.471 11 N -0.367 5.367 12 C 0.025 3.975 13 C 0.051 3.949 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.569 4.569 17 H 0.060 0.940 18 C -0.171 4.171 19 N -0.538 5.538 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.246 0.754 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.426 6.054 1.659 20.415 hybrid contribution 1.483 -0.650 0.142 1.625 sum -17.943 5.404 1.800 18.826 Atomic orbital electron populations 1.21786 0.94187 1.01840 1.02086 1.21975 0.96042 0.99193 0.94170 0.90317 1.22588 0.95182 0.99797 0.98090 1.22332 0.97283 0.99959 0.95727 1.21484 0.93640 0.99683 0.94577 0.92503 1.21918 0.91027 1.00641 1.02982 1.21539 0.85195 0.83813 0.80839 1.90640 1.85899 1.36215 1.34372 1.46206 1.08273 1.39424 1.42778 1.21192 0.85437 0.93503 0.97405 1.18344 0.90352 0.93698 0.92508 1.21673 1.00034 0.97911 0.98233 1.21666 1.00733 0.96772 0.98638 1.21295 0.94226 1.19142 1.22277 0.93980 1.25446 1.00631 0.96053 0.94996 1.69902 1.24454 1.32234 1.27161 0.85770 0.79685 0.78944 0.78482 1.20457 1.20674 1.20193 1.22286 0.95558 0.98888 0.98103 0.92413 0.91904 0.92843 0.91767 0.91372 0.93930 0.92547 0.86900 0.86703 0.75447 0.94852 0.94819 0.94226 0.91881 0.96464 0.96477 0.91884 0.94248 0.92987 0.90035 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.12 71.98 0.66 -1.08 16 2 C -0.10 -1.43 3.46 -9.72 -0.03 -1.46 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -2.20 6.33 31.89 0.20 -2.00 16 5 C -0.12 -2.80 5.36 31.67 0.17 -2.63 16 6 C -0.07 -1.65 2.56 -10.07 -0.03 -1.68 16 7 H 0.06 1.50 7.97 -2.39 -0.02 1.48 16 8 C -0.13 -2.74 4.83 29.85 0.14 -2.59 16 9 C 0.50 16.37 7.60 87.66 0.67 17.03 16 10 O -0.59 -24.44 14.75 -3.04 -0.04 -24.48 16 11 N -0.71 -24.44 4.96 -463.07 -2.30 -26.74 16 12 C 0.15 6.44 4.50 86.38 0.39 6.83 16 13 C 0.05 2.40 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 15 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 16 C -0.53 -28.47 8.01 25.60 0.21 -28.27 16 17 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 18 C 0.03 1.51 5.15 84.65 0.44 1.95 16 19 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 20 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C -0.11 -1.74 6.03 31.32 0.19 -1.55 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.67 8.11 -2.39 -0.02 0.65 16 28 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.28 7.60 -2.39 -0.02 1.26 16 31 H 0.06 1.39 7.78 -2.39 -0.02 1.37 16 32 H 0.11 1.99 8.04 -2.38 -0.02 1.97 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.41 11.93 6.16 -92.71 -0.57 11.36 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 38 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 39 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 42 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 43 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 44 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 45 H 0.07 1.04 7.81 -2.39 -0.02 1.02 16 Total: -1.00 -61.35 343.92 4.39 -56.96 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.37 Total: 19.81 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.13 Total: -22.62 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.10 Total: -74.63 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.04 Total: -24.48 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -61.35 4.39 -56.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.908 kcal (2) G-P(sol) polarization free energy of solvation -61.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds