Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.01521 * 2 1 4 4 C 1.54267 * 110.07159 * 121.41681 * 2 1 3 5 5 C 1.54890 * 104.19766 * 142.91795 * 4 2 1 6 6 C 1.54886 * 102.74832 * 322.06014 * 5 4 2 7 7 C 1.53877 * 110.03325 * 238.60458 * 2 1 3 8 8 H 1.09000 * 110.02819 * 121.33603 * 7 2 1 9 9 C 1.52997 * 110.03363 * 359.95539 * 7 2 1 10 10 C 1.50697 * 109.47294 * 174.99879 * 9 7 2 11 11 O 1.21282 * 119.99876 * 359.97438 * 10 9 7 12 12 N 1.34771 * 120.00268 * 179.97438 * 10 9 7 13 13 C 1.46501 * 120.00329 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47296 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47088 * 60.00440 * 14 13 12 16 16 C 1.52998 * 109.47369 * 300.00245 * 14 13 12 17 17 C 1.50697 * 109.47235 * 180.02562 * 14 13 12 18 18 H 1.08006 * 120.00063 * 359.85183 * 17 14 13 19 19 C 1.37874 * 120.00102 * 179.85647 * 17 14 13 20 20 N 1.31510 * 120.00258 * 1.51081 * 19 17 14 21 21 Si 1.86807 * 119.99922 * 181.23691 * 19 17 14 22 22 H 1.48502 * 109.47091 * 270.27302 * 21 19 17 23 23 H 1.48504 * 109.47109 * 30.27297 * 21 19 17 24 24 H 1.48499 * 109.47143 * 150.27368 * 21 19 17 25 25 H 1.09011 * 109.47052 * 181.39173 * 1 2 3 26 26 H 1.08995 * 109.47369 * 301.39137 * 1 2 3 27 27 H 1.08998 * 109.47177 * 61.39433 * 1 2 3 28 28 H 1.09008 * 110.48312 * 261.59630 * 4 2 1 29 29 H 1.09001 * 110.49075 * 24.10474 * 4 2 1 30 30 H 1.09004 * 110.75542 * 80.37130 * 5 4 2 31 31 H 1.08997 * 110.76078 * 203.73890 * 5 4 2 32 32 H 1.09005 * 110.48337 * 279.26230 * 6 5 4 33 33 H 1.09001 * 110.48878 * 156.62399 * 6 5 4 34 34 H 1.08999 * 109.47610 * 54.99352 * 9 7 2 35 35 H 1.09000 * 109.46798 * 294.99569 * 9 7 2 36 36 H 0.97000 * 119.99818 * 0.02562 * 12 10 9 37 37 H 1.09006 * 109.46705 * 60.00230 * 13 12 10 38 38 H 1.09000 * 109.47205 * 300.00290 * 13 12 10 39 39 H 1.08994 * 109.47256 * 172.66870 * 15 14 13 40 40 H 1.09009 * 109.47091 * 292.66757 * 15 14 13 41 41 H 1.08994 * 109.47180 * 52.66407 * 15 14 13 42 42 H 1.09002 * 109.47278 * 307.47054 * 16 14 13 43 43 H 1.09008 * 109.47112 * 67.46285 * 16 14 13 44 44 H 1.08995 * 109.47475 * 187.46651 * 16 14 13 45 45 H 0.97004 * 119.99630 * 356.76505 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0594 -0.7553 1.2365 5 6 3.3149 -1.4996 0.7183 6 6 2.8885 -1.9396 -0.7043 7 6 2.0571 -0.7531 -1.2340 8 1 2.6853 -0.0941 -1.8333 9 6 0.8862 -1.2671 -2.0741 10 6 1.4127 -1.8941 -3.3392 11 8 2.6069 -1.9262 -3.5486 12 7 0.5566 -2.4191 -4.2380 13 6 1.0684 -3.0282 -5.4682 14 6 -0.1025 -3.5423 -6.3082 15 6 -1.0266 -2.3756 -6.6630 16 6 -0.8838 -4.5869 -5.5087 17 6 0.4240 -4.1693 -7.5733 18 1 1.4874 -4.1961 -7.7608 19 6 -0.4517 -4.7087 -8.4916 20 7 -1.7479 -4.6495 -8.2776 21 14 0.2028 -5.5168 -10.0434 22 1 0.3229 -4.4993 -11.1185 23 1 1.5377 -6.1069 -9.7691 24 1 -0.7317 -6.5865 -10.4764 25 1 -0.3634 -1.0275 0.0250 26 1 -0.3634 0.5353 0.8772 27 1 -0.3633 0.4920 -0.9022 28 1 2.3305 -0.0533 2.0252 29 1 1.3149 -1.4647 1.5980 30 1 4.1718 -0.8273 0.6740 31 1 3.5347 -2.3667 1.3412 32 1 2.2788 -2.8420 -0.6577 33 1 3.7647 -2.1021 -1.3321 34 1 0.2280 -0.4359 -2.3271 35 1 0.3294 -2.0110 -1.5044 36 1 -0.3985 -2.3931 -4.0707 37 1 1.7271 -3.8591 -5.2154 38 1 1.6247 -2.2838 -6.0380 39 1 -1.7866 -2.7151 -7.3666 40 1 -1.5086 -2.0056 -5.7579 41 1 -0.4429 -1.5749 -7.1170 42 1 -0.1986 -5.3516 -5.1429 43 1 -1.3749 -4.1048 -4.6634 44 1 -1.6345 -5.0485 -6.1501 45 1 -2.0862 -4.2686 -7.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = -82.236810 kcal Electronic energy + Delta-G solvation = -21209.846674 eV Core-core repulsion = 18225.410033 eV Total energy + Delta-G solvation = -2984.436641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14890 -39.49683 -38.37489 -35.21815 -33.03630 -32.25446 -31.62642 -28.11592 -27.87423 -27.16777 -25.92264 -25.36044 -21.91669 -21.50919 -20.74983 -19.54367 -19.01003 -18.01084 -16.96404 -16.66418 -16.35287 -15.65385 -15.63517 -15.13920 -15.05265 -14.60210 -14.49269 -14.26042 -14.14768 -13.39882 -13.35100 -13.25800 -13.14115 -12.86697 -12.67618 -12.53792 -12.43154 -11.93838 -11.83915 -11.72069 -11.66637 -11.57875 -11.51173 -11.42170 -11.37035 -11.13907 -10.80565 -10.41537 -10.34236 -9.98021 -8.39382 -6.25814 1.55299 1.61709 1.73144 1.79713 2.35155 2.61182 3.24440 3.61567 3.69100 3.77465 4.00864 4.21364 4.31118 4.33673 4.43456 4.43625 4.47411 4.53457 4.65590 4.73527 4.76143 4.82059 4.83550 4.87440 4.90909 4.94162 4.97340 5.08225 5.10571 5.15925 5.17482 5.20339 5.30452 5.42030 5.44054 5.49128 5.52283 5.61589 5.64412 5.82726 6.15572 6.31248 6.64877 6.77082 7.35188 7.50368 8.88608 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.003679 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.257313 B = 7608.423081 C = 7936.494608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.072 4.072 8 H 0.055 0.945 9 C -0.126 4.126 10 C 0.497 3.503 11 O -0.590 6.590 12 N -0.716 5.716 13 C 0.158 3.842 14 C 0.034 3.966 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.605 4.605 18 H 0.034 0.966 19 C -0.015 4.015 20 N -0.938 5.938 21 Si 1.105 2.895 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.283 1.283 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.409 0.591 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 8.561 18.746 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.091 4.091 8 H 0.074 0.926 9 C -0.165 4.165 10 C 0.286 3.714 11 O -0.471 6.471 12 N -0.368 5.368 13 C 0.033 3.967 14 C 0.033 3.967 15 C -0.193 4.193 16 C -0.192 4.192 17 C -0.644 4.644 18 H 0.053 0.947 19 C -0.215 4.215 20 N -0.580 5.580 21 Si 0.929 3.071 22 H -0.204 1.204 23 H -0.206 1.206 24 H -0.208 1.208 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.245 0.755 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.901 7.806 17.194 18.979 hybrid contribution 0.383 0.511 0.857 1.069 sum 2.284 8.317 18.052 20.006 Atomic orbital electron populations 1.22030 0.93932 1.02457 1.02299 1.21773 0.96682 0.99028 0.93257 0.90714 1.22442 0.96806 0.99046 0.96924 1.22505 0.98294 1.00178 0.95242 1.22349 0.99121 0.97460 0.96421 1.21530 0.94975 0.96802 0.95766 0.92600 1.22050 1.00106 1.02452 0.91928 1.21641 0.86249 0.77601 0.85953 1.90644 1.17745 1.59696 1.78981 1.46170 1.10802 1.59356 1.20441 1.21048 0.96451 0.94961 0.84211 1.18537 0.92005 0.92854 0.93298 1.21907 0.99771 0.97465 1.00164 1.21891 0.99809 0.99094 0.98372 1.22122 0.94293 1.41621 1.06326 0.94717 1.26740 0.94284 0.95757 1.04683 1.70903 1.13544 1.44657 1.28860 0.83060 0.74881 0.76230 0.72896 1.20443 1.20602 1.20847 0.91861 0.91839 0.91973 0.90642 0.90873 0.91740 0.91112 0.92489 0.93971 0.86494 0.86797 0.75471 0.94801 0.94819 0.93189 0.92940 0.95352 0.95230 0.92884 0.93390 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.88 71.98 0.57 -1.30 16 2 C -0.09 -1.39 3.50 -10.07 -0.04 -1.43 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.65 6.36 31.67 0.20 -1.45 16 5 C -0.12 -2.24 6.91 31.88 0.22 -2.02 16 6 C -0.12 -2.77 5.43 31.67 0.17 -2.60 16 7 C -0.07 -1.58 2.54 -10.07 -0.03 -1.60 16 8 H 0.06 1.48 7.92 -2.39 -0.02 1.46 16 9 C -0.13 -2.71 3.88 29.85 0.12 -2.60 16 10 C 0.50 16.19 7.61 87.66 0.67 16.86 16 11 O -0.59 -24.36 14.83 -3.03 -0.04 -24.41 16 12 N -0.72 -24.04 5.04 -463.07 -2.33 -26.37 16 13 C 0.16 6.80 4.49 86.38 0.39 7.19 16 14 C 0.03 1.57 0.50 -52.93 -0.03 1.54 16 15 C -0.14 -5.88 7.88 71.98 0.57 -5.31 16 16 C -0.13 -5.79 7.88 71.98 0.57 -5.23 16 17 C -0.61 -33.01 8.01 25.60 0.21 -32.80 16 18 H 0.03 1.95 7.74 -2.91 -0.02 1.93 16 19 C -0.01 -0.81 5.10 84.65 0.43 -0.38 16 20 N -0.94 -53.13 12.12 21.45 0.26 -52.87 16 21 Si 1.11 49.81 29.90 68.60 2.05 51.86 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H 0.06 0.75 6.86 -2.38 -0.02 0.74 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.74 6.62 -2.39 -0.02 0.73 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 0.96 7.84 -2.39 -0.02 0.95 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.37 7.76 -2.38 -0.02 1.35 16 33 H 0.04 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.12 2.00 6.42 -2.39 -0.02 1.98 16 35 H 0.11 1.99 6.91 -2.39 -0.02 1.98 16 36 H 0.41 11.49 6.30 -92.71 -0.58 10.91 16 37 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 2.43 5.19 -2.39 -0.01 2.42 16 40 H 0.05 1.85 7.05 -2.38 -0.02 1.83 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.86 7.05 -2.38 -0.02 1.85 16 44 H 0.05 2.32 5.25 -2.39 -0.01 2.31 16 45 H 0.28 15.30 3.56 -92.71 -0.33 14.97 16 Total: -1.00 -65.16 334.59 4.76 -60.39 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.81 Total: 22.52 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 4.02 Total: -31.13 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.07 Total: -79.24 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.41 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -65.16 4.76 -60.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.843 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds