Wall clock time and date at job start Mon Mar 30 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.01886 * 2 1 4 4 C 1.54267 * 110.03059 * 121.44513 * 2 1 3 5 5 C 1.54884 * 104.19543 * 142.89400 * 4 2 1 6 6 C 1.54890 * 102.74959 * 322.05236 * 5 4 2 7 7 C 1.53878 * 110.03041 * 238.60661 * 2 1 3 8 8 C 1.52994 * 110.02835 * 121.38447 * 7 2 1 9 9 C 1.50696 * 110.03287 * 359.97438 * 7 2 1 10 10 O 1.21278 * 119.99920 * 113.73217 * 9 7 2 11 11 N 1.34776 * 120.00542 * 293.73531 * 9 7 2 12 12 C 1.46496 * 120.00391 * 185.31145 * 11 9 7 13 13 C 1.52998 * 109.47227 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47461 * 59.99734 * 13 12 11 15 15 C 1.53004 * 109.46856 * 299.99767 * 13 12 11 16 16 C 1.50697 * 109.47334 * 180.02562 * 13 12 11 17 17 H 1.08002 * 120.00087 * 5.19090 * 16 13 12 18 18 C 1.37882 * 120.00377 * 185.19462 * 16 13 12 19 19 N 1.31517 * 119.99403 * 352.30677 * 18 16 13 20 20 Si 1.86795 * 120.00219 * 172.03676 * 18 16 13 21 21 H 1.48500 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47309 * 119.99962 * 20 18 16 23 23 H 1.48501 * 109.46956 * 240.00087 * 20 18 16 24 24 H 1.09000 * 109.47205 * 185.13702 * 1 2 3 25 25 H 1.09005 * 109.46696 * 305.13936 * 1 2 3 26 26 H 1.08998 * 109.46898 * 65.13304 * 1 2 3 27 27 H 1.09007 * 110.48522 * 261.56800 * 4 2 1 28 28 H 1.08999 * 110.49013 * 24.07753 * 4 2 1 29 29 H 1.09003 * 110.76051 * 80.37460 * 5 4 2 30 30 H 1.09006 * 110.75240 * 203.55152 * 5 4 2 31 31 H 1.09004 * 110.48585 * 279.26700 * 6 5 4 32 32 H 1.09003 * 110.48758 * 156.62384 * 6 5 4 33 33 H 1.08999 * 109.47285 * 299.30402 * 8 7 2 34 34 H 1.08995 * 109.47555 * 59.31552 * 8 7 2 35 35 H 1.09005 * 109.47076 * 179.30915 * 8 7 2 36 36 H 0.97001 * 119.99429 * 5.31429 * 11 9 7 37 37 H 1.08991 * 109.47050 * 59.99925 * 12 11 9 38 38 H 1.08998 * 109.47159 * 299.99665 * 12 11 9 39 39 H 1.09002 * 109.47052 * 172.92020 * 14 13 12 40 40 H 1.08996 * 109.46907 * 292.92597 * 14 13 12 41 41 H 1.09003 * 109.46409 * 52.92134 * 14 13 12 42 42 H 1.08991 * 109.47340 * 307.13060 * 15 13 12 43 43 H 1.08997 * 109.46799 * 67.13077 * 15 13 12 44 44 H 1.09007 * 109.46935 * 187.12664 * 15 13 12 45 45 H 0.96998 * 120.00441 * 5.36676 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7561 1.2365 5 6 3.3136 -1.5011 0.7184 6 6 2.8874 -1.9404 -0.7044 7 6 2.0571 -0.7531 -1.2341 8 6 2.9399 0.1715 -2.0746 9 6 0.9038 -1.2589 -2.0617 10 8 0.7113 -0.8102 -3.1719 11 7 0.0860 -2.2098 -1.5682 12 6 -0.9630 -2.7847 -2.4138 13 6 -1.7429 -3.8328 -1.6173 14 6 -2.3796 -3.1728 -0.3925 15 6 -0.7903 -4.9403 -1.1624 16 6 -2.8216 -4.4247 -2.4873 17 1 -2.8865 -4.1493 -3.5296 18 6 -3.7258 -5.3179 -1.9527 19 7 -3.5587 -5.7695 -0.7289 20 14 -5.1922 -5.8805 -2.9639 21 1 -5.1555 -5.2254 -4.2961 22 1 -5.1391 -7.3546 -3.1351 23 1 -6.4480 -5.5083 -2.2643 24 1 -0.3633 -1.0235 0.0920 25 1 -0.3633 0.5915 0.8404 26 1 -0.3633 0.4321 -0.9324 27 1 2.3298 -0.0546 2.0255 28 1 1.3133 -1.4651 1.5974 29 1 4.1710 -0.8295 0.6748 30 1 3.5343 -2.3667 1.3432 31 1 2.2770 -2.8424 -0.6583 32 1 3.7636 -2.1033 -1.3319 33 1 2.3532 1.0258 -2.4125 34 1 3.7774 0.5216 -1.4714 35 1 3.3179 -0.3742 -2.9392 36 1 0.1921 -2.5134 -0.6531 37 1 -0.5095 -3.2545 -3.2864 38 1 -1.6419 -1.9958 -2.7375 39 1 -3.0359 -3.8870 0.1050 40 1 -1.5974 -2.8564 0.2975 41 1 -2.9591 -2.3051 -0.7076 42 1 -0.2427 -5.3247 -2.0229 43 1 -0.0864 -4.5377 -0.4342 44 1 -1.3632 -5.7476 -0.7061 45 1 -2.8451 -5.4165 -0.1748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458016645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:27 Heat of formation + Delta-G solvation = -56.049151 kcal Electronic energy + Delta-G solvation = -22347.197858 eV Core-core repulsion = 19363.896799 eV Total energy + Delta-G solvation = -2983.301059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65214 -37.67453 -36.65278 -33.58009 -31.40714 -31.22788 -30.44955 -26.72413 -26.07565 -25.68819 -24.71427 -23.77756 -21.46308 -20.68905 -19.14241 -18.84118 -16.93231 -16.16245 -15.95610 -15.15972 -14.73731 -14.53764 -13.88928 -13.75929 -13.50097 -13.20390 -12.84763 -12.70280 -12.53771 -12.38021 -12.21612 -12.10797 -11.57449 -11.41205 -11.24850 -11.13380 -10.94770 -10.81035 -10.68225 -10.63889 -10.62396 -10.54724 -10.50976 -10.13246 -9.88995 -9.54539 -9.26556 -8.53367 -8.34462 -8.21059 -6.27213 -4.11321 3.04049 3.43473 3.45650 3.60323 3.71058 4.44577 4.47709 4.50306 4.62770 5.08387 5.15007 5.22941 5.31003 5.31532 5.35653 5.48344 5.49281 5.70337 5.74587 5.83422 5.85571 5.94041 6.00043 6.05252 6.08278 6.16358 6.18501 6.21092 6.24758 6.28916 6.37314 6.56508 6.64204 6.71374 6.78698 6.92511 7.06178 7.11302 7.49466 7.65272 8.05487 8.19495 8.40336 8.70829 8.83790 9.59052 10.98927 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.005152 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.835675 B = 5433.451708 C = 5699.619344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.081 4.081 3 H 0.079 0.921 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.121 4.121 9 C 0.522 3.478 10 O -0.553 6.553 11 N -0.719 5.719 12 C 0.139 3.861 13 C 0.041 3.959 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.585 4.585 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 1.070 2.930 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.287 1.287 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.014 0.986 44 H 0.070 0.930 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 9.023 5.010 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.100 4.100 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.087 4.087 8 C -0.178 4.178 9 C 0.308 3.692 10 O -0.431 6.431 11 N -0.371 5.371 12 C 0.016 3.984 13 C 0.041 3.959 14 C -0.204 4.204 15 C -0.201 4.201 16 C -0.623 4.623 17 H 0.071 0.929 18 C -0.178 4.178 19 N -0.559 5.559 20 Si 0.899 3.101 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.214 1.214 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.234 0.766 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.797 8.292 4.211 14.250 hybrid contribution 1.311 0.898 0.356 1.628 sum 12.107 9.190 4.567 15.871 Atomic orbital electron populations 1.22309 0.94426 1.03425 1.01955 1.21799 0.96182 0.99278 0.92760 0.90278 1.22511 0.97472 0.99130 0.96911 1.22481 0.97700 1.00001 0.95776 1.22537 0.99567 0.96896 0.96486 1.21564 0.94577 0.96818 0.95778 1.21638 0.98248 0.99052 0.98894 1.20293 0.83085 0.79201 0.86639 1.90650 1.73370 1.58056 1.21034 1.46529 1.33969 1.39970 1.16662 1.21567 0.87791 0.95911 0.93110 1.18517 0.93297 0.90777 0.93342 1.22066 0.99605 1.00441 0.98270 1.22066 0.98015 1.01205 0.98780 1.21802 1.13894 1.29656 0.96998 0.92949 1.25660 1.00377 0.93843 0.97902 1.70821 1.35209 1.40487 1.09355 0.83534 0.75593 0.76197 0.74823 1.21536 1.21463 1.21391 0.90919 0.92544 0.92326 0.91440 0.91123 0.91406 0.91238 0.90822 0.90943 0.91980 0.92348 0.92242 0.76619 0.92853 0.92572 0.90778 0.96572 0.94412 0.94518 0.96736 0.91173 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 7.83 37.16 0.29 -1.87 16 2 C -0.08 -0.93 3.16 -89.50 -0.28 -1.21 16 3 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 4 C -0.12 -1.19 6.36 -25.07 -0.16 -1.35 16 5 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 6 C -0.12 -1.33 5.79 -25.07 -0.15 -1.48 16 7 C -0.08 -1.10 0.81 -154.55 -0.12 -1.22 16 8 C -0.12 -1.48 7.47 37.15 0.28 -1.20 16 9 C 0.52 9.06 4.75 -10.99 -0.05 9.01 16 10 O -0.55 -11.70 16.05 5.56 0.09 -11.61 16 11 N -0.72 -12.65 3.14 -60.30 -0.19 -12.84 16 12 C 0.14 2.96 4.51 -4.04 -0.02 2.94 16 13 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 14 C -0.15 -3.20 7.85 37.16 0.29 -2.91 16 15 C -0.14 -3.14 7.92 37.16 0.29 -2.84 16 16 C -0.58 -15.58 8.00 -34.44 -0.28 -15.85 16 17 H 0.05 1.43 7.76 -52.49 -0.41 1.03 16 18 C 0.03 0.70 5.08 -17.82 -0.09 0.61 16 19 N -0.92 -25.75 12.17 55.43 0.67 -25.07 16 20 Si 1.07 24.60 29.91 -169.99 -5.08 19.51 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.07 1.04 4.58 -51.93 -0.24 0.80 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 27 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.07 0.72 7.78 -51.93 -0.40 0.31 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.92 6.81 -51.93 -0.35 0.57 16 32 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 6.39 4.13 -40.82 -0.17 6.22 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.80 5.10 -51.93 -0.26 1.54 16 40 H 0.02 0.29 6.40 -51.93 -0.33 -0.04 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.01 0.26 7.05 -51.93 -0.37 -0.10 16 44 H 0.07 1.71 5.37 -51.92 -0.28 1.43 16 45 H 0.28 7.60 3.58 -40.82 -0.15 7.46 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -29.29 330.34 -7.36 -36.65 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.59 Total: 6.18 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.24 Total: -17.80 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.48 Total: -37.91 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.29 -7.36 -36.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458016645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.396 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds