Wall clock time and date at job start Mon Mar 30 2020 01:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47129 * 120.00147 * 2 1 3 5 5 C 1.46497 * 120.00160 * 299.99664 * 4 2 1 6 6 C 1.50694 * 109.47115 * 270.00206 * 5 4 2 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 6 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 6 14 14 C 1.34780 * 120.00033 * 119.99922 * 4 2 1 15 15 O 1.21283 * 120.00111 * 180.02562 * 14 4 2 16 16 C 1.50707 * 120.00018 * 359.97438 * 14 4 2 17 17 C 1.52994 * 109.47057 * 180.02562 * 16 14 4 18 18 H 1.08996 * 110.01706 * 305.70126 * 17 16 14 19 19 C 1.53866 * 110.03322 * 67.09708 * 17 16 14 20 20 C 1.54269 * 106.60078 * 119.28432 * 19 17 16 21 21 C 1.54882 * 104.19748 * 23.60616 * 20 19 17 22 22 H 1.09003 * 110.75708 * 80.37122 * 21 20 19 23 23 C 1.52996 * 110.75913 * 203.55995 * 21 20 19 24 24 C 1.54273 * 110.02867 * 184.31141 * 17 16 14 25 25 H 1.09007 * 109.46727 * 299.99734 * 1 2 3 26 26 H 1.08996 * 109.47411 * 59.99637 * 1 2 3 27 27 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46727 * 240.00266 * 2 1 3 29 29 H 1.09001 * 109.46886 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46910 * 300.00119 * 3 2 1 31 31 H 1.08997 * 109.47010 * 60.00327 * 3 2 1 32 32 H 1.09007 * 109.47078 * 149.99845 * 5 4 2 33 33 H 1.09003 * 109.46733 * 30.00568 * 5 4 2 34 34 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47158 * 300.00755 * 16 14 4 36 36 H 1.09008 * 109.46644 * 60.00137 * 16 14 4 37 37 H 1.09000 * 110.03434 * 238.56563 * 19 17 16 38 38 H 1.09001 * 110.03585 * 359.94809 * 19 17 16 39 39 H 1.09000 * 110.48839 * 142.28784 * 20 19 17 40 40 H 1.09006 * 110.48417 * 264.79654 * 20 19 17 41 41 H 1.08997 * 109.47090 * 58.54631 * 23 21 20 42 42 H 1.09000 * 109.47259 * 178.54736 * 23 21 20 43 43 H 1.08997 * 109.47070 * 298.54749 * 23 21 20 44 44 H 1.08993 * 110.48564 * 335.78369 * 24 17 16 45 45 H 1.09007 * 110.48076 * 98.43021 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7033 0.8017 2.9829 7 1 3.5433 1.0356 2.3457 8 6 2.5818 1.4099 4.2144 9 7 1.5592 1.1247 4.9906 10 14 3.8698 2.6389 4.7801 11 1 3.5111 3.1463 6.1289 12 1 5.1966 1.9744 4.8375 13 1 3.9253 3.7734 3.8236 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3585 2.0627 16 6 3.1568 -2.3017 -0.2964 17 6 4.0360 -3.5459 -0.1560 18 1 4.8980 -3.3246 0.4731 19 6 3.2216 -4.7007 0.4529 20 6 3.2230 -5.8383 -0.5891 21 6 4.4847 -5.5675 -1.4456 22 1 5.3796 -5.9325 -0.9414 23 6 4.3472 -6.2039 -2.8300 24 6 4.5048 -4.0212 -1.5468 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6239 -1.0227 3.2291 33 1 0.6905 0.2973 2.4843 34 1 1.4740 1.5523 5.8571 35 1 2.2483 -2.5586 -0.8410 36 1 3.7016 -1.5309 -0.8417 37 1 3.6890 -5.0405 1.3772 38 1 2.2003 -4.3745 0.6493 39 1 3.2976 -6.8074 -0.0958 40 1 2.3246 -5.7929 -1.2047 41 1 3.4651 -5.8022 -3.3286 42 1 5.2337 -5.9790 -3.4230 43 1 4.2449 -7.2839 -2.7249 44 1 3.8149 -3.6807 -2.3188 45 1 5.5143 -3.6646 -1.7514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531582543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:57 Heat of formation + Delta-G solvation = -70.551504 kcal Electronic energy + Delta-G solvation = -21490.506407 eV Core-core repulsion = 18506.576479 eV Total energy + Delta-G solvation = -2983.929928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55514 -38.02722 -35.83618 -32.91400 -32.28688 -30.76280 -29.57426 -27.96089 -26.74253 -26.34454 -24.15976 -22.55589 -21.20353 -20.02768 -19.55314 -17.74307 -16.51177 -16.41962 -16.04821 -15.06299 -14.53719 -14.32321 -14.17270 -13.57611 -13.47397 -13.34231 -13.03520 -12.80519 -12.56160 -12.27693 -11.91436 -11.81734 -11.60419 -11.53098 -11.15176 -10.97750 -10.86658 -10.82901 -10.81397 -10.62650 -10.48730 -10.47650 -10.38281 -10.32918 -10.12503 -9.94557 -9.50154 -8.71974 -8.37592 -7.55853 -5.99096 -4.02158 3.33782 3.38431 3.40972 3.56422 4.00458 4.48286 4.60771 4.71479 4.76951 5.20480 5.22077 5.32640 5.35293 5.36013 5.50223 5.52978 5.59226 5.61816 5.71040 5.71566 5.75139 5.84289 5.85029 5.94162 5.96804 6.04426 6.12932 6.17133 6.24194 6.26889 6.32878 6.39992 6.45996 6.59934 6.63844 6.68831 6.99711 7.19160 7.53368 7.65746 7.98386 8.31358 8.55448 8.97534 9.22069 9.61937 11.08953 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.004756 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.355378 B = 5886.093675 C = 6327.964696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.287 1.287 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.503 3.497 15 O -0.540 6.540 16 C -0.134 4.134 17 C -0.075 4.075 18 H 0.078 0.922 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.099 4.099 22 H 0.073 0.927 23 C -0.142 4.142 24 C -0.115 4.115 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -8.536 -16.099 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.328 5.328 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.213 1.213 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.290 3.710 15 O -0.418 6.418 16 C -0.174 4.174 17 C -0.094 4.094 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.117 4.117 22 H 0.091 0.909 23 C -0.200 4.200 24 C -0.153 4.153 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.376 -8.776 -15.367 17.750 hybrid contribution 0.640 0.910 0.404 1.184 sum 2.016 -7.866 -14.963 17.025 Atomic orbital electron populations 1.22157 0.95772 1.01685 1.02353 1.20973 0.93961 0.94065 0.88127 1.22137 1.01296 0.95827 1.02201 1.48342 1.49415 1.26628 1.08416 1.19191 0.95731 0.94872 0.77479 1.21416 1.08847 1.23365 1.02021 0.92516 1.24925 0.95726 0.97145 0.96378 1.69926 1.29542 1.43432 1.10670 0.86623 0.82118 0.81308 0.77747 1.21274 1.20291 1.20320 1.20394 0.79080 0.80790 0.90776 1.90657 1.53240 1.58053 1.39809 1.21851 1.00697 0.98445 0.96433 1.21494 0.98333 0.93744 0.95790 0.90362 1.22066 1.00423 0.94146 0.97915 1.22476 0.97409 0.98629 0.97420 1.22104 0.98507 0.95456 0.95649 0.90851 1.21753 1.01466 1.00283 0.96474 1.22529 1.00899 0.94860 0.97014 0.91360 0.92385 0.93002 0.90756 0.92827 0.93385 0.90123 0.94204 0.94997 0.92809 0.89907 0.89874 0.91583 0.92000 0.92191 0.91985 0.92734 0.92937 0.92939 0.91590 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.17 37.16 0.34 -2.06 16 2 C 0.13 2.20 3.17 -67.93 -0.22 1.98 16 3 C -0.16 -2.62 8.47 37.16 0.31 -2.30 16 4 N -0.60 -12.56 2.39 -167.46 -0.40 -12.96 16 5 C 0.25 6.41 4.59 -5.20 -0.02 6.39 16 6 C -0.52 -14.51 7.83 -34.44 -0.27 -14.78 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.50 10.44 7.21 -10.98 -0.08 10.36 16 15 O -0.54 -13.49 14.68 5.56 0.08 -13.41 16 16 C -0.13 -2.01 3.16 -27.88 -0.09 -2.10 16 17 C -0.07 -1.06 2.55 -89.51 -0.23 -1.29 16 18 H 0.08 1.28 7.95 -51.93 -0.41 0.86 16 19 C -0.11 -1.56 5.37 -25.62 -0.14 -1.69 16 20 C -0.12 -1.37 6.27 -25.07 -0.16 -1.53 16 21 C -0.10 -1.01 3.48 -88.59 -0.31 -1.32 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.14 -1.21 9.29 37.16 0.35 -0.86 16 24 C -0.12 -1.27 5.82 -25.03 -0.15 -1.42 16 25 H 0.07 1.16 6.66 -51.93 -0.35 0.82 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.02 5.77 -51.93 -0.30 0.72 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 32 H 0.04 1.19 7.42 -51.92 -0.39 0.80 16 33 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 36 H 0.08 1.13 7.79 -51.92 -0.40 0.73 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.98 7.36 -51.93 -0.38 0.60 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.05 0.45 8.13 -51.93 -0.42 0.02 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.67 7.75 -51.93 -0.40 0.26 16 45 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -31.52 348.43 -8.44 -39.96 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.33 Total: -0.81 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.75 Total: -9.02 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.34 Total: -38.95 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.52 -8.44 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531582543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.595 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds