Wall clock time and date at job start Mon Mar 30 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47290 * 2 1 4 4 H 1.09004 * 109.46976 * 54.90692 * 3 2 1 5 5 N 1.46900 * 109.46942 * 294.90685 * 3 2 1 6 6 C 1.46897 * 111.00099 * 116.32721 * 5 3 2 7 7 C 1.53006 * 109.47240 * 85.82710 * 6 5 3 8 8 C 1.50700 * 115.55178 * 273.82294 * 7 6 5 9 9 H 1.07991 * 120.00355 * 113.66879 * 8 7 6 10 10 C 1.37883 * 119.99723 * 293.66895 * 8 7 6 11 11 N 1.31518 * 119.99610 * 352.06783 * 10 8 7 12 12 Si 1.86797 * 119.99739 * 172.06618 * 10 8 7 13 13 H 1.48493 * 109.47393 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46874 * 120.00131 * 12 10 8 15 15 H 1.48496 * 109.46902 * 240.00011 * 12 10 8 16 16 C 1.52999 * 117.49618 * 128.10851 * 7 6 5 17 17 C 1.53002 * 117.49603 * 59.48696 * 7 6 5 18 18 C 1.53001 * 109.47289 * 174.90331 * 3 2 1 19 19 C 1.53184 * 109.54187 * 55.10719 * 18 3 2 20 20 C 1.53104 * 109.15876 * 183.23982 * 19 18 3 21 21 O 1.42911 * 109.48396 * 57.47166 * 20 19 18 22 22 C 1.42903 * 114.09666 * 298.89041 * 21 20 19 23 23 C 1.53088 * 109.41679 * 61.16297 * 22 21 20 24 24 H 1.09004 * 109.46853 * 180.70748 * 1 2 3 25 25 H 1.09004 * 109.46862 * 300.70839 * 1 2 3 26 26 H 1.08995 * 109.47067 * 60.70739 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99762 * 2 1 3 28 28 H 1.09008 * 109.46906 * 119.99976 * 2 1 3 29 29 H 1.00907 * 110.99688 * 240.28064 * 5 3 2 30 30 H 1.09000 * 109.47282 * 205.82822 * 6 5 3 31 31 H 1.09000 * 109.47148 * 325.83281 * 6 5 3 32 32 H 0.97002 * 119.99129 * 182.77652 * 11 10 8 33 33 H 1.08995 * 117.50088 * 0.02562 * 16 7 6 34 34 H 1.09007 * 117.49524 * 145.02568 * 16 7 6 35 35 H 1.08995 * 117.50171 * 214.98122 * 17 7 6 36 36 H 1.09007 * 117.49975 * 359.97438 * 17 7 6 37 37 H 1.08999 * 109.54202 * 175.28124 * 18 3 2 38 38 H 1.09005 * 109.52130 * 303.05559 * 19 18 3 39 39 H 1.09001 * 109.52217 * 63.24461 * 19 18 3 40 40 H 1.09000 * 109.40428 * 297.49693 * 20 19 18 41 41 H 1.08992 * 109.48252 * 177.49878 * 20 19 18 42 42 H 1.08998 * 109.48184 * 301.16871 * 22 21 20 43 43 H 1.09008 * 109.47464 * 181.14020 * 22 21 20 44 44 H 1.09002 * 109.52200 * 182.48512 * 23 22 21 45 45 H 1.08995 * 109.52394 * 62.29319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6041 1.9820 0.8409 5 7 1.6534 2.0985 -1.2562 6 6 0.7354 3.2175 -1.0049 7 6 1.5426 4.4794 -0.6935 8 6 1.9425 4.6558 0.7488 9 1 2.9844 4.6131 1.0293 10 6 0.9779 4.8717 1.7101 11 7 -0.2709 5.0792 1.3536 12 14 1.4450 4.8694 3.5188 13 1 2.9018 4.6152 3.6535 14 1 1.1157 6.1882 4.1167 15 1 0.6888 3.8035 4.2238 16 6 1.2196 5.7407 -1.4969 17 6 2.5178 4.9759 -1.7627 18 6 3.5647 1.4444 0.1281 19 6 4.1734 0.5845 -0.9839 20 6 5.6922 0.5264 -0.7997 21 8 5.9957 0.0058 0.4961 22 6 5.4923 0.7962 1.5750 23 6 3.9654 0.8633 1.4876 24 1 -0.3633 -1.0276 0.0127 25 1 -0.3633 0.5248 0.8836 26 1 -0.3633 0.5028 -0.8962 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.4664 2.4059 -1.7687 30 1 0.1203 3.3884 -1.8884 31 1 0.0942 2.9779 -0.1566 32 1 -0.9420 5.2710 2.0273 33 1 0.4318 5.6717 -2.2470 34 1 1.2962 6.6986 -0.9823 35 1 3.4484 5.4305 -1.4231 36 1 2.5847 4.4033 -2.6879 37 1 3.9363 2.4656 0.0442 38 1 3.7625 -0.4237 -0.9309 39 1 3.9393 1.0238 -1.9535 40 1 6.1072 1.5299 -0.8946 41 1 6.1264 -0.1203 -1.5621 42 1 5.9047 1.8032 1.5112 43 1 5.7826 0.3438 2.5233 44 1 3.5827 1.5019 2.2837 45 1 3.5502 -0.1391 1.5920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569654146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:23 Heat of formation + Delta-G solvation = -44.252963 kcal Electronic energy + Delta-G solvation = -22480.066534 eV Core-core repulsion = 19497.276997 eV Total energy + Delta-G solvation = -2982.789538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52968 -37.51492 -35.78633 -32.34054 -32.05780 -31.25553 -30.82510 -26.78255 -25.73022 -23.89620 -23.20637 -22.76016 -21.17997 -20.84563 -18.99870 -18.71060 -16.42452 -15.93305 -15.84099 -14.76524 -14.60248 -14.54113 -14.44217 -14.10883 -13.60039 -13.54544 -13.12940 -12.86337 -12.36768 -12.03902 -11.81871 -11.51174 -11.41152 -11.18682 -11.14749 -11.02311 -10.81017 -10.62269 -10.43049 -10.33816 -10.27144 -10.23354 -9.96153 -9.64414 -9.59953 -9.20838 -8.92017 -8.56797 -8.19158 -7.40539 -6.09824 -4.12480 3.20289 3.30423 3.32009 4.04444 4.32864 4.89541 5.07375 5.11860 5.13256 5.21104 5.30706 5.43246 5.45566 5.59124 5.62951 5.76110 5.82281 5.84877 5.91452 6.09662 6.13294 6.14329 6.27884 6.32655 6.34471 6.39772 6.47465 6.47899 6.52941 6.57158 6.64659 6.71874 6.85662 6.88896 6.98116 7.07579 7.21327 7.35461 7.39539 7.55345 7.82181 8.05998 8.28149 8.44772 8.86085 9.49495 10.98253 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.007799 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.252819 B = 3589.143594 C = 3925.471987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.098 3.902 4 H 0.080 0.920 5 N -0.679 5.679 6 C 0.100 3.900 7 C 0.024 3.976 8 C -0.488 4.488 9 H 0.055 0.945 10 C 0.072 3.928 11 N -0.874 5.874 12 Si 0.879 3.121 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.173 4.173 17 C -0.213 4.213 18 C -0.096 4.096 19 C -0.148 4.148 20 C 0.060 3.940 21 O -0.389 6.389 22 C 0.062 3.938 23 C -0.150 4.150 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.329 0.671 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 -8.496 -2.464 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.013 4.013 4 H 0.098 0.902 5 N -0.308 5.308 6 C -0.029 4.029 7 C 0.022 3.978 8 C -0.526 4.526 9 H 0.073 0.927 10 C -0.131 4.131 11 N -0.510 5.510 12 Si 0.707 3.293 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.208 1.208 16 C -0.211 4.211 17 C -0.250 4.250 18 C -0.116 4.116 19 C -0.186 4.186 20 C -0.017 4.017 21 O -0.308 6.308 22 C -0.015 4.015 23 C -0.188 4.188 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.881 -9.122 -2.496 11.137 hybrid contribution 0.553 1.283 1.356 1.947 sum 6.434 -7.840 -1.140 10.206 Atomic orbital electron populations 1.21664 0.96294 0.99746 1.02375 1.21656 0.95840 0.96996 1.00389 1.21549 0.91859 0.94273 0.93593 0.90222 1.60960 1.19993 1.30392 1.19495 1.21675 0.93754 0.88199 0.99279 1.19701 0.95234 0.91690 0.91174 1.20413 0.92605 1.49952 0.89631 0.92654 1.24924 0.95005 0.94843 0.98326 1.70007 1.01335 1.46486 1.33216 0.86739 0.78776 0.77803 0.86022 1.19684 1.21096 1.20804 1.22681 0.96050 0.98908 1.03496 1.22835 0.94283 1.07090 1.00829 1.21569 0.96905 0.99373 0.93729 1.22273 0.95214 1.01398 0.99703 1.22587 0.95553 0.98691 0.84836 1.87865 1.77283 1.51240 1.14386 1.22568 0.93805 0.95265 0.89875 1.22252 0.95919 1.02056 0.98571 0.94413 0.93458 0.91772 0.92287 0.93026 0.85246 0.94138 0.90114 0.93065 0.91972 0.90665 0.90988 0.91641 0.90430 0.90887 0.90803 0.93545 0.89520 0.93365 0.89456 0.90751 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.79 37.16 0.36 -1.92 16 2 C -0.11 -1.72 4.82 -26.73 -0.13 -1.85 16 3 C 0.10 1.70 1.61 -67.71 -0.11 1.59 16 4 H 0.08 1.69 6.48 -51.93 -0.34 1.35 16 5 N -0.68 -12.36 5.91 -106.72 -0.63 -12.99 16 6 C 0.10 2.16 5.79 -3.82 -0.02 2.13 16 7 C 0.02 0.54 1.39 -155.66 -0.22 0.33 16 8 C -0.49 -12.33 7.81 -34.44 -0.27 -12.60 16 9 H 0.06 1.43 7.83 -52.49 -0.41 1.02 16 10 C 0.07 1.88 5.22 -17.82 -0.09 1.79 16 11 N -0.87 -23.74 12.73 55.43 0.71 -23.04 16 12 Si 0.88 20.29 29.55 -169.99 -5.02 15.27 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 C -0.17 -3.94 9.88 -26.73 -0.26 -4.21 16 17 C -0.21 -4.40 9.20 -26.73 -0.25 -4.65 16 18 C -0.10 -1.52 1.91 -90.43 -0.17 -1.69 16 19 C -0.15 -2.01 4.86 -26.58 -0.13 -2.14 16 20 C 0.06 0.77 6.84 37.21 0.25 1.02 16 21 O -0.39 -5.63 10.77 -35.23 -0.38 -6.01 16 22 C 0.06 0.84 6.84 37.20 0.25 1.10 16 23 C -0.15 -2.22 5.24 -26.59 -0.14 -2.36 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.09 7.77 -51.93 -0.40 0.69 16 27 H 0.06 0.88 6.59 -51.93 -0.34 0.54 16 28 H 0.05 0.76 6.27 -51.92 -0.33 0.43 16 29 H 0.33 5.84 5.63 -39.29 -0.22 5.62 16 30 H 0.04 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.08 1.96 6.76 -51.93 -0.35 1.61 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.07 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 0.99 6.30 -51.93 -0.33 0.67 16 39 H 0.07 0.98 7.05 -51.93 -0.37 0.62 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.02 6.32 -51.93 -0.33 0.69 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -25.97 341.92 -9.10 -35.06 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.01 Total: 10.00 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -0.92 Total: -23.45 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.08 Total: -36.03 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.38 Total: -6.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.97 -9.10 -35.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569654146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.190 kcal (2) G-P(sol) polarization free energy of solvation -25.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds