Wall clock time and date at job start Mon Mar 30 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47290 * 2 1 4 4 H 1.09004 * 109.46976 * 54.90692 * 3 2 1 5 5 N 1.46900 * 109.46942 * 294.90685 * 3 2 1 6 6 C 1.46897 * 111.00099 * 116.32721 * 5 3 2 7 7 C 1.53006 * 109.47240 * 85.82710 * 6 5 3 8 8 C 1.50700 * 115.55178 * 273.82294 * 7 6 5 9 9 H 1.07991 * 120.00355 * 113.66879 * 8 7 6 10 10 C 1.37883 * 119.99723 * 293.66895 * 8 7 6 11 11 N 1.31518 * 119.99610 * 352.06783 * 10 8 7 12 12 Si 1.86797 * 119.99739 * 172.06618 * 10 8 7 13 13 H 1.48493 * 109.47393 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46874 * 120.00131 * 12 10 8 15 15 H 1.48496 * 109.46902 * 240.00011 * 12 10 8 16 16 C 1.52999 * 117.49618 * 128.10851 * 7 6 5 17 17 C 1.53002 * 117.49603 * 59.48696 * 7 6 5 18 18 C 1.53001 * 109.47289 * 174.90331 * 3 2 1 19 19 C 1.53184 * 109.54187 * 55.10719 * 18 3 2 20 20 C 1.53104 * 109.15876 * 183.23982 * 19 18 3 21 21 O 1.42911 * 109.48396 * 57.47166 * 20 19 18 22 22 C 1.42903 * 114.09666 * 298.89041 * 21 20 19 23 23 C 1.53088 * 109.41679 * 61.16297 * 22 21 20 24 24 H 1.09004 * 109.46853 * 180.70748 * 1 2 3 25 25 H 1.09004 * 109.46862 * 300.70839 * 1 2 3 26 26 H 1.08995 * 109.47067 * 60.70739 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99762 * 2 1 3 28 28 H 1.09008 * 109.46906 * 119.99976 * 2 1 3 29 29 H 1.00907 * 110.99688 * 240.28064 * 5 3 2 30 30 H 1.09000 * 109.47282 * 205.82822 * 6 5 3 31 31 H 1.09000 * 109.47148 * 325.83281 * 6 5 3 32 32 H 0.97002 * 119.99129 * 182.77652 * 11 10 8 33 33 H 1.08995 * 117.50088 * 0.02562 * 16 7 6 34 34 H 1.09007 * 117.49524 * 145.02568 * 16 7 6 35 35 H 1.08995 * 117.50171 * 214.98122 * 17 7 6 36 36 H 1.09007 * 117.49975 * 359.97438 * 17 7 6 37 37 H 1.08999 * 109.54202 * 175.28124 * 18 3 2 38 38 H 1.09005 * 109.52130 * 303.05559 * 19 18 3 39 39 H 1.09001 * 109.52217 * 63.24461 * 19 18 3 40 40 H 1.09000 * 109.40428 * 297.49693 * 20 19 18 41 41 H 1.08992 * 109.48252 * 177.49878 * 20 19 18 42 42 H 1.08998 * 109.48184 * 301.16871 * 22 21 20 43 43 H 1.09008 * 109.47464 * 181.14020 * 22 21 20 44 44 H 1.09002 * 109.52200 * 182.48512 * 23 22 21 45 45 H 1.08995 * 109.52394 * 62.29319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6041 1.9820 0.8409 5 7 1.6534 2.0985 -1.2562 6 6 0.7354 3.2175 -1.0049 7 6 1.5426 4.4794 -0.6935 8 6 1.9425 4.6558 0.7488 9 1 2.9844 4.6131 1.0293 10 6 0.9779 4.8717 1.7101 11 7 -0.2709 5.0792 1.3536 12 14 1.4450 4.8694 3.5188 13 1 2.9018 4.6152 3.6535 14 1 1.1157 6.1882 4.1167 15 1 0.6888 3.8035 4.2238 16 6 1.2196 5.7407 -1.4969 17 6 2.5178 4.9759 -1.7627 18 6 3.5647 1.4444 0.1281 19 6 4.1734 0.5845 -0.9839 20 6 5.6922 0.5264 -0.7997 21 8 5.9957 0.0058 0.4961 22 6 5.4923 0.7962 1.5750 23 6 3.9654 0.8633 1.4876 24 1 -0.3633 -1.0276 0.0127 25 1 -0.3633 0.5248 0.8836 26 1 -0.3633 0.5028 -0.8962 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.4664 2.4059 -1.7687 30 1 0.1203 3.3884 -1.8884 31 1 0.0942 2.9779 -0.1566 32 1 -0.9420 5.2710 2.0273 33 1 0.4318 5.6717 -2.2470 34 1 1.2962 6.6986 -0.9823 35 1 3.4484 5.4305 -1.4231 36 1 2.5847 4.4033 -2.6879 37 1 3.9363 2.4656 0.0442 38 1 3.7625 -0.4237 -0.9309 39 1 3.9393 1.0238 -1.9535 40 1 6.1072 1.5299 -0.8946 41 1 6.1264 -0.1203 -1.5621 42 1 5.9047 1.8032 1.5112 43 1 5.7826 0.3438 2.5233 44 1 3.5827 1.5019 2.2837 45 1 3.5502 -0.1391 1.5920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569654146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:23 Heat of formation + Delta-G solvation = -58.177411 kcal Electronic energy + Delta-G solvation = -22480.670344 eV Core-core repulsion = 19497.276997 eV Total energy + Delta-G solvation = -2983.393347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75577 -39.06717 -37.27334 -34.10404 -33.62080 -32.64261 -31.93998 -28.19520 -27.65863 -25.40345 -24.35537 -24.06597 -22.90497 -22.20036 -20.84621 -20.00742 -18.17953 -17.24344 -16.97663 -16.61787 -16.09972 -15.86460 -15.67615 -15.56117 -15.19020 -14.81301 -14.57725 -14.37265 -13.79710 -13.68269 -13.15443 -13.01156 -12.95560 -12.77640 -12.71292 -12.52905 -12.34198 -12.25610 -12.07715 -11.90381 -11.72383 -11.48674 -11.32366 -11.19542 -10.92543 -10.78110 -10.50660 -10.37055 -10.01163 -8.99735 -8.11314 -6.16851 1.32667 1.38084 1.45367 2.38555 3.01328 3.14401 3.42811 3.66370 3.87312 3.90770 4.01709 4.18666 4.33649 4.35444 4.38882 4.46585 4.53968 4.60605 4.64122 4.71690 4.73591 4.80750 4.84158 4.91208 4.96089 4.97678 5.03878 5.08782 5.16959 5.22782 5.23748 5.25343 5.28550 5.39612 5.49270 5.57552 5.61163 5.63502 5.71520 5.86734 6.29811 6.40254 6.42813 6.83840 6.87268 7.46642 8.96403 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.007799 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.252819 B = 3589.143594 C = 3925.471987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.102 3.898 4 H 0.037 0.963 5 N -0.665 5.665 6 C 0.117 3.883 7 C 0.004 3.996 8 C -0.487 4.487 9 H 0.045 0.955 10 C 0.031 3.969 11 N -0.903 5.903 12 Si 0.929 3.071 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.282 1.282 16 C -0.185 4.185 17 C -0.183 4.183 18 C -0.091 4.091 19 C -0.140 4.140 20 C 0.058 3.942 21 O -0.397 6.397 22 C 0.064 3.936 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.335 0.665 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.257 0.743 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.111 0.889 42 H 0.044 0.956 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -10.120 -3.188 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.008 4.008 4 H 0.055 0.945 5 N -0.294 5.294 6 C -0.013 4.013 7 C 0.002 3.998 8 C -0.525 4.525 9 H 0.063 0.937 10 C -0.169 4.169 11 N -0.541 5.541 12 Si 0.755 3.245 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.208 1.208 16 C -0.223 4.223 17 C -0.220 4.220 18 C -0.111 4.111 19 C -0.178 4.178 20 C -0.018 4.018 21 O -0.316 6.316 22 C -0.013 4.013 23 C -0.186 4.186 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.124 0.876 44 H 0.075 0.925 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.412 -10.749 -3.222 13.449 hybrid contribution 0.089 1.806 1.565 2.392 sum 7.501 -8.943 -1.656 11.790 Atomic orbital electron populations 1.21622 0.96689 1.00761 1.00648 1.21608 0.95408 0.95563 1.01616 1.21469 0.93052 0.94831 0.91497 0.94503 1.60978 1.19831 1.28753 1.19888 1.21341 0.93722 0.88556 0.97660 1.19772 0.96972 0.92296 0.90777 1.20558 0.91961 1.48858 0.91095 0.93656 1.25477 0.95036 0.94969 1.01431 1.70098 1.02046 1.47927 1.33985 0.85949 0.78725 0.77418 0.82363 1.19015 1.21322 1.20764 1.22631 0.97974 0.97858 1.03859 1.22823 0.93103 1.05364 1.00749 1.21454 0.95474 0.98670 0.95467 1.22211 0.95800 1.00972 0.98771 1.22720 0.94891 0.99407 0.84806 1.87862 1.77294 1.51521 1.14969 1.22588 0.92602 0.95370 0.90732 1.22226 0.97079 1.01938 0.97388 0.91968 0.95545 0.93154 0.90734 0.91904 0.84636 0.94307 0.93368 0.93347 0.91141 0.92814 0.90949 0.88939 0.92928 0.90326 0.90236 0.93545 0.87091 0.93767 0.87612 0.92459 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.79 71.98 0.70 -3.64 16 2 C -0.10 -3.06 4.82 30.59 0.15 -2.92 16 3 C 0.10 3.51 1.61 44.91 0.07 3.58 16 4 H 0.04 1.61 6.48 -2.38 -0.02 1.59 16 5 N -0.67 -23.72 5.91 -491.56 -2.90 -26.62 16 6 C 0.12 5.09 5.79 86.31 0.50 5.59 16 7 C 0.00 0.17 1.39 -52.93 -0.07 0.09 16 8 C -0.49 -25.01 7.81 25.60 0.20 -24.81 16 9 H 0.05 2.37 7.83 -2.91 -0.02 2.35 16 10 C 0.03 1.66 5.22 84.66 0.44 2.10 16 11 N -0.90 -50.39 12.73 21.45 0.27 -50.12 16 12 Si 0.93 42.45 29.55 68.60 2.03 44.48 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 C -0.18 -8.42 9.88 30.59 0.30 -8.12 16 17 C -0.18 -7.33 9.20 30.60 0.28 -7.04 16 18 C -0.09 -2.77 1.91 -10.67 -0.02 -2.79 16 19 C -0.14 -3.43 4.86 30.69 0.15 -3.28 16 20 C 0.06 1.32 6.84 72.02 0.49 1.81 16 21 O -0.40 -10.43 10.77 -148.98 -1.60 -12.03 16 22 C 0.06 1.62 6.84 72.01 0.49 2.11 16 23 C -0.15 -4.22 5.24 30.68 0.16 -4.06 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 25 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.05 1.68 7.77 -2.39 -0.02 1.67 16 27 H 0.07 2.00 6.59 -2.39 -0.02 1.98 16 28 H 0.06 1.72 6.27 -2.38 -0.01 1.71 16 29 H 0.33 11.31 5.63 -89.69 -0.51 10.80 16 30 H 0.04 1.68 7.90 -2.39 -0.02 1.66 16 31 H 0.05 2.42 6.76 -2.39 -0.02 2.40 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.07 3.05 8.05 -2.39 -0.02 3.03 16 34 H 0.05 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.09 3.21 7.75 -2.38 -0.02 3.19 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.87 6.30 -2.38 -0.02 1.85 16 39 H 0.08 1.87 7.05 -2.39 -0.02 1.85 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 2.13 6.32 -2.39 -0.02 2.11 16 Total: -1.00 -55.93 341.92 2.09 -53.84 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.44 Total: 31.82 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.85 Total: -41.36 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.63 Total: -76.74 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.60 Total: -12.03 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -55.93 2.09 -53.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569654146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.339 kcal (2) G-P(sol) polarization free energy of solvation -55.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds