Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46708 * 2 1 4 4 N 1.46499 * 109.46720 * 240.00296 * 2 1 3 5 5 C 1.46500 * 119.99703 * 240.43532 * 4 2 1 6 6 C 1.50702 * 109.46897 * 94.73181 * 5 4 2 7 7 H 1.07992 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99864 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00257 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47276 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47009 * 120.00156 * 10 8 6 13 13 H 1.48506 * 109.47204 * 239.99963 * 10 8 6 14 14 C 1.34776 * 120.00156 * 60.43988 * 4 2 1 15 15 O 1.21281 * 120.00376 * 356.31654 * 14 4 2 16 16 C 1.50701 * 120.00097 * 176.32385 * 14 4 2 17 17 H 1.09006 * 109.46758 * 333.01978 * 16 14 4 18 18 C 1.52998 * 109.47538 * 93.02130 * 16 14 4 19 19 C 1.52995 * 109.47540 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47224 * 300.00427 * 19 18 16 21 21 C 1.52998 * 109.47211 * 59.99371 * 20 19 18 22 22 C 1.52995 * 109.47540 * 300.00435 * 21 20 19 23 23 H 1.08999 * 109.47124 * 299.99925 * 22 21 20 24 24 C 1.52998 * 109.47540 * 180.02562 * 22 21 20 25 25 H 1.08997 * 109.46915 * 180.27130 * 1 2 3 26 26 H 1.09000 * 109.46947 * 300.26658 * 1 2 3 27 27 H 1.09003 * 109.47384 * 60.26419 * 1 2 3 28 28 H 1.08991 * 109.47234 * 120.00114 * 2 1 3 29 29 H 1.09003 * 109.47520 * 305.40919 * 3 2 1 30 30 H 1.08994 * 109.47579 * 65.41273 * 3 2 1 31 31 H 1.09009 * 109.46533 * 185.41066 * 3 2 1 32 32 H 1.09007 * 109.47043 * 214.72856 * 5 4 2 33 33 H 1.08994 * 109.47245 * 334.72908 * 5 4 2 34 34 H 0.96997 * 120.00264 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47270 * 300.00329 * 18 16 14 36 36 H 1.08999 * 109.46851 * 60.00074 * 18 16 14 37 37 H 1.09006 * 109.46893 * 59.99764 * 19 18 16 38 38 H 1.09001 * 109.47577 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.47281 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.46782 * 299.99857 * 20 19 18 41 41 H 1.08999 * 109.46851 * 60.00528 * 21 20 19 42 42 H 1.09004 * 109.47270 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.46851 * 300.00093 * 24 22 21 44 44 H 1.08994 * 109.47265 * 59.99799 * 24 22 21 45 45 H 1.08995 * 109.47390 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8526 -1.8873 -1.0619 6 6 1.9840 -3.1164 -1.1387 7 1 0.9173 -3.0161 -1.2736 8 6 2.5512 -4.3689 -1.0356 9 7 3.8503 -4.4910 -0.8708 10 14 1.4744 -5.8924 -1.1302 11 1 0.0583 -5.4868 -1.3176 12 1 1.9043 -6.7320 -2.2771 13 1 1.6049 -6.6696 0.1285 14 6 1.7000 -0.2249 -2.4203 15 8 0.9552 0.7256 -2.5328 16 6 2.2695 -0.8854 -3.6493 17 1 3.2224 -1.3533 -3.4018 18 6 1.2942 -1.9506 -4.1542 19 6 1.8726 -2.6216 -5.4016 20 6 2.0893 -1.5705 -6.4921 21 6 3.0646 -0.5053 -5.9872 22 6 2.4862 0.1657 -4.7398 23 1 1.5335 0.6337 -4.9877 24 6 3.4612 1.2313 -4.2352 25 1 -0.3633 -1.0276 0.0049 26 1 -0.3633 0.5180 0.8876 27 1 -0.3634 0.5097 -0.8923 28 1 1.8934 -0.5138 0.8899 29 1 1.5997 1.9836 -0.8376 30 1 1.7580 1.9276 0.9344 31 1 3.1257 1.4440 -0.0969 32 1 3.5870 -1.9104 -1.8671 33 1 3.3672 -1.8654 -0.1013 34 1 4.2493 -5.3721 -0.7987 35 1 1.1401 -2.6997 -3.3775 36 1 0.3413 -1.4827 -4.4017 37 1 2.8253 -3.0896 -5.1537 38 1 1.1775 -3.3802 -5.7616 39 1 2.5018 -2.0484 -7.3806 40 1 1.1366 -1.1025 -6.7400 41 1 4.0173 -0.9733 -5.7393 42 1 3.2186 0.2438 -6.7639 43 1 4.4141 0.7637 -3.9875 44 1 3.6151 1.9800 -5.0122 45 1 3.0489 1.7096 -3.3469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591758291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = -85.680911 kcal Electronic energy + Delta-G solvation = -22636.269327 eV Core-core repulsion = 19651.683339 eV Total energy + Delta-G solvation = -2984.585988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46389 -38.93980 -36.89317 -35.05431 -33.47407 -33.34694 -31.37503 -28.86955 -28.02489 -27.39783 -24.98955 -24.46862 -22.89762 -21.98860 -20.60774 -19.48621 -18.51658 -17.73197 -16.98733 -16.33584 -15.98094 -15.73589 -15.32995 -15.07221 -14.93801 -14.53614 -14.42274 -14.01664 -13.74669 -13.70153 -13.40753 -13.23816 -13.15887 -12.81040 -12.73844 -12.71690 -12.66075 -12.36193 -12.17655 -12.11550 -12.08715 -11.76613 -11.66040 -11.58318 -11.25425 -11.23047 -10.86564 -10.55409 -10.07415 -9.35868 -8.17252 -6.28897 1.38087 1.42319 1.51605 1.90463 2.34820 2.48469 3.12700 3.69079 3.78803 3.90595 4.04019 4.26278 4.27843 4.30814 4.37381 4.43653 4.51353 4.59965 4.64829 4.69854 4.73893 4.78332 4.82755 4.93507 4.95260 5.00125 5.01284 5.06398 5.16846 5.20420 5.23061 5.26222 5.33563 5.34617 5.39688 5.43174 5.44802 5.55576 5.65310 5.72085 6.00809 6.11481 6.64919 6.90599 7.38175 7.54509 8.88374 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.009576 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.934678 B = 2923.393281 C = 4295.666808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 C -0.151 4.151 4 N -0.599 5.599 5 C 0.253 3.747 6 C -0.526 4.526 7 H 0.050 0.950 8 C 0.026 3.974 9 N -0.919 5.919 10 Si 0.945 3.055 11 H -0.272 1.272 12 H -0.276 1.276 13 H -0.281 1.281 14 C 0.525 3.475 15 O -0.583 6.583 16 C -0.092 4.092 17 H 0.077 0.923 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.070 4.070 23 H 0.066 0.934 24 C -0.142 4.142 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.016 0.984 34 H 0.266 0.734 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 6.897 -6.548 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.330 5.330 5 C 0.132 3.868 6 C -0.565 4.565 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.558 5.558 10 Si 0.771 3.229 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.207 1.207 14 C 0.315 3.685 15 O -0.465 6.465 16 C -0.113 4.113 17 H 0.095 0.905 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.145 4.145 22 C -0.089 4.089 23 H 0.084 0.916 24 C -0.200 4.200 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.593 7.247 -6.542 9.892 hybrid contribution -0.321 -1.245 0.537 1.393 sum -1.914 6.002 -6.005 8.703 Atomic orbital electron populations 1.22062 0.95150 1.01077 1.02902 1.21079 0.94782 0.93404 0.87611 1.22058 1.00381 0.95421 1.03066 1.48381 1.50831 1.28326 1.05415 1.19101 0.89789 0.81301 0.96625 1.21558 0.93857 0.91253 1.49842 0.93149 1.25527 0.95891 1.01330 0.94706 1.70008 1.11044 1.24609 1.50187 0.85695 0.79294 0.80022 0.77866 1.19668 1.20181 1.20652 1.20727 0.80068 0.82632 0.85088 1.90483 1.38519 1.30298 1.87231 1.21293 1.00112 0.97054 0.92799 0.90490 1.21444 0.97082 0.97236 0.98699 1.21475 1.00785 0.98113 0.94629 1.21533 0.99798 0.96090 0.97656 1.21575 0.98568 0.98207 0.96160 1.20957 0.99415 0.94360 0.94184 0.91574 1.21795 0.98547 0.98618 1.01001 0.94403 0.90126 0.92254 0.90255 0.92413 0.89819 0.93404 0.95578 0.96551 0.92481 0.91949 0.92979 0.92797 0.91313 0.90210 0.91741 0.92169 0.89870 0.93029 0.90754 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.13 71.98 0.66 -4.85 16 2 C 0.13 5.04 3.28 44.99 0.15 5.19 16 3 C -0.15 -4.89 9.03 71.98 0.65 -4.24 16 4 N -0.60 -25.60 2.42 -802.14 -1.94 -27.54 16 5 C 0.25 12.19 4.96 85.63 0.42 12.61 16 6 C -0.53 -27.10 7.57 25.60 0.19 -26.91 16 7 H 0.05 2.68 7.42 -2.91 -0.02 2.66 16 8 C 0.03 1.34 5.46 84.65 0.46 1.80 16 9 N -0.92 -50.26 13.29 21.45 0.28 -49.97 16 10 Si 0.95 41.83 29.54 68.60 2.03 43.85 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 C 0.53 21.88 5.09 87.66 0.45 22.33 16 15 O -0.58 -25.35 11.86 -3.03 -0.04 -25.39 16 16 C -0.09 -3.44 1.51 -11.54 -0.02 -3.46 16 17 H 0.08 3.17 5.85 -2.38 -0.01 3.15 16 18 C -0.11 -3.95 5.19 30.59 0.16 -3.79 16 19 C -0.11 -3.43 5.92 30.59 0.18 -3.25 16 20 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 21 C -0.11 -2.70 5.20 30.59 0.16 -2.55 16 22 C -0.07 -2.18 1.92 -10.80 -0.02 -2.20 16 23 H 0.07 2.19 7.86 -2.39 -0.02 2.17 16 24 C -0.14 -4.19 8.93 71.98 0.64 -3.55 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.32 6.07 -2.39 -0.01 2.30 16 28 H 0.08 2.96 7.73 -2.39 -0.02 2.94 16 29 H 0.06 2.05 6.43 -2.39 -0.02 2.03 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.03 1.33 5.89 -2.38 -0.01 1.31 16 33 H 0.02 0.84 7.82 -2.39 -0.02 0.82 16 34 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.06 2.70 5.76 -2.38 -0.01 2.69 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.23 6.76 -2.39 -0.02 1.22 16 Total: -1.00 -57.21 339.25 5.53 -51.68 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.93 Total: 22.82 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.27 Total: -15.45 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.65 Total: -77.51 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -57.21 5.53 -51.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.004 kcal (2) G-P(sol) polarization free energy of solvation -57.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds