Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47304 * 2 1 4 4 C 1.52998 * 109.47454 * 239.99240 * 2 1 3 5 5 C 1.52997 * 109.47454 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46852 * 60.00573 * 5 4 2 7 7 C 1.53003 * 109.47014 * 299.99607 * 6 5 4 8 8 H 1.08998 * 109.47105 * 300.00351 * 7 6 5 9 9 C 1.52998 * 109.47267 * 180.02562 * 7 6 5 10 10 N 1.46897 * 109.47174 * 65.00204 * 9 7 6 11 11 C 1.48534 * 111.00122 * 52.60472 * 10 9 7 12 12 C 1.54937 * 103.22882 * 159.72025 * 11 10 9 13 13 C 1.54600 * 102.91993 * 322.58809 * 12 11 10 14 14 O 1.42900 * 110.39151 * 262.99533 * 13 12 11 15 15 C 1.50699 * 110.30821 * 140.87420 * 13 12 11 16 16 H 1.08003 * 119.99694 * 239.11780 * 15 13 12 17 17 C 1.37878 * 120.00112 * 59.11742 * 15 13 12 18 18 N 1.31514 * 119.99861 * 4.96633 * 17 15 13 19 19 Si 1.86800 * 119.99889 * 184.96163 * 17 15 13 20 20 H 1.48498 * 109.47020 * 95.00615 * 19 17 15 21 21 H 1.48504 * 109.47025 * 215.00126 * 19 17 15 22 22 H 1.48498 * 109.47358 * 334.99985 * 19 17 15 23 23 C 1.47903 * 111.00026 * 170.00124 * 10 9 7 24 24 C 1.53003 * 109.46852 * 119.99814 * 2 1 3 25 25 H 1.08998 * 109.47016 * 300.00339 * 1 2 3 26 26 H 1.09000 * 109.46674 * 60.00332 * 1 2 3 27 27 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47485 * 300.00648 * 4 2 1 29 29 H 1.09000 * 109.46831 * 60.00523 * 4 2 1 30 30 H 1.08998 * 109.47304 * 300.00760 * 5 4 2 31 31 H 1.08998 * 109.47584 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47103 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47472 * 59.99734 * 6 5 4 34 34 H 1.09001 * 109.47185 * 185.00711 * 9 7 6 35 35 H 1.09001 * 109.47004 * 304.99865 * 9 7 6 36 36 H 1.08994 * 110.66489 * 278.15821 * 11 10 9 37 37 H 1.09002 * 110.66325 * 41.28230 * 11 10 9 38 38 H 1.08992 * 110.72277 * 204.22688 * 12 11 10 39 39 H 1.08999 * 110.87552 * 81.01435 * 12 11 10 40 40 H 0.96695 * 114.00385 * 295.76894 * 14 13 12 41 41 H 0.97000 * 119.99939 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.91748 * 333.50704 * 23 10 9 43 43 H 1.08999 * 109.91990 * 94.60662 * 23 10 9 44 44 H 1.08998 * 109.47472 * 59.99734 * 24 2 1 45 45 H 1.09003 * 109.46834 * 299.99428 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7208 -1.2494 6 6 4.0805 -1.4417 -0.0001 7 6 3.5705 -0.7203 1.2491 8 1 3.9335 0.3075 1.2488 9 6 4.0815 -1.4407 2.4984 10 7 5.5454 -1.3361 2.5597 11 6 5.9834 0.0783 2.4411 12 6 7.4126 0.0582 3.0390 13 6 7.2839 -0.9444 4.2088 14 8 7.0722 -0.2494 5.4393 15 6 8.5189 -1.8032 4.3000 16 1 8.4377 -2.8767 4.2137 17 6 9.7524 -1.2184 4.4935 18 7 9.8410 0.0780 4.6961 19 14 11.2977 -2.2676 4.4681 20 1 11.8927 -2.2395 3.1078 21 1 12.2765 -1.7310 5.4476 22 1 10.9526 -3.6661 4.8287 23 6 6.0564 -1.8083 3.8648 24 6 2.0399 -0.7212 1.2493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2076 -2.1391 30 1 3.9330 0.3069 -1.2497 31 1 3.9334 -1.2352 -2.1391 32 1 5.1705 -1.4409 -0.0001 33 1 3.7175 -2.4695 0.0002 34 1 3.6468 -0.9812 3.3861 35 1 3.7937 -2.4912 2.4553 36 1 6.0078 0.3870 1.3961 37 1 5.3327 0.7324 3.0215 38 1 7.6909 1.0458 3.4063 39 1 8.1359 -0.2967 2.3048 40 1 7.8131 0.3114 5.7068 41 1 10.7088 0.4894 4.8326 42 1 5.2899 -1.6857 4.6301 43 1 6.3450 -2.8569 3.7933 44 1 1.6766 -1.7489 1.2494 45 1 1.6766 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = -97.179582 kcal Electronic energy + Delta-G solvation = -21585.989696 eV Core-core repulsion = 18600.905088 eV Total energy + Delta-G solvation = -2985.084608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62788 -39.32342 -36.69133 -34.17372 -33.80687 -32.58844 -30.62715 -29.79563 -27.23246 -26.84591 -25.27490 -23.00928 -22.47713 -21.26940 -20.84080 -20.37149 -19.09825 -16.93555 -16.91752 -16.41008 -16.11126 -15.86684 -15.48284 -15.17085 -14.79703 -14.58658 -14.43522 -13.97160 -13.84234 -13.42193 -13.22741 -13.15776 -13.08165 -12.71456 -12.65725 -12.48325 -12.36516 -12.28672 -12.13350 -12.01619 -11.87558 -11.78402 -11.56659 -11.23542 -11.14199 -10.83169 -10.76609 -10.56887 -10.10135 -9.28526 -8.21660 -6.35297 1.40348 1.42331 1.52382 2.39533 2.98681 3.15186 3.68961 3.84119 3.93121 3.95598 4.16220 4.21717 4.31087 4.37661 4.40125 4.48794 4.55451 4.59863 4.66033 4.66170 4.75816 4.81801 4.83749 4.86301 4.94606 5.00191 5.06578 5.10476 5.15561 5.24747 5.26181 5.33395 5.42505 5.44628 5.45979 5.52266 5.58681 5.60243 5.69084 5.77025 6.00540 6.16813 6.28240 6.69389 7.33735 7.43881 8.84405 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037297 B = 0.004142 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.554641 B = 6758.437181 C = 7020.499837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.102 4.102 7 C -0.079 4.079 8 H 0.061 0.939 9 C 0.051 3.949 10 N -0.511 5.511 11 C 0.047 3.953 12 C -0.108 4.108 13 C 0.225 3.775 14 O -0.603 6.603 15 C -0.556 4.556 16 H 0.052 0.948 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.273 1.273 23 C 0.062 3.938 24 C -0.103 4.103 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.376 0.624 41 H 0.269 0.731 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.083 0.233 -10.778 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.098 4.098 8 H 0.080 0.920 9 C -0.077 4.077 10 N -0.235 5.235 11 C -0.080 4.080 12 C -0.147 4.147 13 C 0.186 3.814 14 O -0.412 6.412 15 C -0.594 4.594 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.553 5.553 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.066 4.066 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.347 -0.273 -11.197 19.000 hybrid contribution 1.435 0.384 1.093 1.844 sum -13.913 0.111 -10.104 17.195 Atomic orbital electron populations 1.21798 0.94324 1.02058 1.01912 1.21105 0.96030 0.99177 0.94550 0.91887 1.21569 0.94822 1.00777 0.97447 1.21539 0.96183 1.00358 0.97466 1.21421 1.00199 0.98862 0.93520 1.21174 0.95826 0.98982 0.93771 0.92026 1.22432 0.86909 1.01062 0.97277 1.64804 1.10929 1.17645 1.30135 1.23133 0.95445 0.89260 1.00187 1.22711 0.94718 0.98945 0.98317 1.19644 0.91671 0.88637 0.81448 1.86087 1.46697 1.65174 1.43229 1.21945 0.92904 0.93717 1.50830 0.92947 1.25695 1.01774 0.96267 0.93436 1.69768 1.25959 1.10699 1.48856 0.85524 0.79021 0.78976 0.77961 1.20065 1.20569 1.19734 1.22687 0.95597 0.99087 0.89249 1.21594 0.93462 1.01104 0.97976 0.92774 0.92006 0.92418 0.91792 0.91264 0.92618 0.91601 0.92908 0.92246 0.95852 0.90560 0.89680 0.94918 0.93432 0.93530 0.77396 0.92188 0.95128 0.91102 0.91502 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.09 -1.58 2.72 -10.79 -0.03 -1.60 16 3 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 5 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 6 C -0.10 -2.50 5.09 30.60 0.16 -2.35 16 7 C -0.08 -2.00 1.87 -10.77 -0.02 -2.02 16 8 H 0.06 1.69 6.52 -2.39 -0.02 1.67 16 9 C 0.05 1.59 4.42 86.30 0.38 1.97 16 10 N -0.51 -19.72 4.85 -883.04 -4.28 -24.00 16 11 C 0.05 1.86 5.09 86.65 0.44 2.30 16 12 C -0.11 -5.19 5.31 31.80 0.17 -5.02 16 13 C 0.23 11.64 0.99 -10.66 -0.01 11.63 16 14 O -0.60 -32.71 12.94 -148.98 -1.93 -34.63 16 15 C -0.56 -30.90 8.12 25.60 0.21 -30.69 16 16 H 0.05 2.93 7.36 -2.91 -0.02 2.90 16 17 C 0.03 1.54 5.22 84.65 0.44 1.98 16 18 N -0.91 -49.82 10.89 21.45 0.23 -49.59 16 19 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 C 0.06 2.80 6.16 86.44 0.53 3.33 16 24 C -0.10 -2.12 4.49 30.62 0.14 -1.98 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.54 7.75 -2.39 -0.02 1.52 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.76 7.81 -2.39 -0.02 0.74 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.99 7.56 -2.39 -0.02 2.97 16 37 H 0.03 1.27 8.01 -2.39 -0.02 1.26 16 38 H 0.05 2.38 7.99 -2.39 -0.02 2.36 16 39 H 0.05 2.38 7.85 -2.39 -0.02 2.36 16 40 H 0.38 20.78 7.29 -74.06 -0.54 20.24 16 41 H 0.27 13.93 8.31 -92.71 -0.77 13.15 16 42 H 0.03 1.38 7.39 -2.39 -0.02 1.36 16 43 H 0.07 3.25 7.40 -2.39 -0.02 3.23 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -57.36 338.30 -0.15 -57.50 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.39 Total: 33.25 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.41 Total: -27.69 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -4.05 Total: -73.59 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.93 Total: -34.63 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.36 -0.15 -57.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.676 kcal (2) G-P(sol) polarization free energy of solvation -57.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds