Wall clock time and date at job start Mon Mar 30 2020 01:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.52998 * 109.47424 * 120.00772 * 2 1 3 5 5 C 1.50709 * 109.46795 * 297.57849 * 4 2 1 6 6 H 1.08004 * 119.99778 * 354.89579 * 5 4 2 7 7 C 1.37875 * 119.99909 * 174.89602 * 5 4 2 8 8 N 1.31509 * 120.00118 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99692 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47537 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47060 * 119.99785 * 9 7 5 12 12 H 1.48506 * 109.47229 * 239.99531 * 9 7 5 13 13 N 1.46898 * 109.46977 * 240.00359 * 2 1 3 14 14 C 1.48033 * 111.00285 * 300.05339 * 13 2 1 15 15 C 1.53526 * 106.87878 * 214.22978 * 14 13 2 16 16 C 1.54109 * 105.62474 * 1.35308 * 15 14 13 17 17 C 1.48586 * 111.00235 * 182.63706 * 13 2 1 18 18 H 1.08998 * 110.65191 * 40.99548 * 17 13 2 19 19 C 1.53001 * 110.65481 * 277.89390 * 17 13 2 20 20 C 1.52606 * 110.33706 * 242.44326 * 15 14 13 21 21 C 1.53205 * 109.19710 * 293.48436 * 20 15 14 22 22 O 1.42907 * 109.33836 * 303.28863 * 21 20 15 23 23 C 1.42919 * 114.21773 * 61.59909 * 22 21 20 24 24 C 1.52618 * 110.33290 * 120.25883 * 15 14 13 25 25 H 1.09000 * 109.46280 * 299.99604 * 1 2 3 26 26 H 1.08994 * 109.47224 * 59.99330 * 1 2 3 27 27 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47638 * 57.57306 * 4 2 1 29 29 H 1.08993 * 109.47358 * 177.58266 * 4 2 1 30 30 H 0.96999 * 120.00190 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.97379 * 333.58540 * 14 13 2 32 32 H 1.09000 * 109.98027 * 94.87134 * 14 13 2 33 33 H 1.09001 * 110.74351 * 139.98805 * 16 15 14 34 34 H 1.09000 * 110.74274 * 263.32729 * 16 15 14 35 35 H 1.08999 * 109.46803 * 61.45054 * 19 17 13 36 36 H 1.08998 * 109.47147 * 181.45221 * 19 17 13 37 37 H 1.08995 * 109.47392 * 301.45353 * 19 17 13 38 38 H 1.08999 * 109.51769 * 53.39371 * 20 15 14 39 39 H 1.08995 * 109.52101 * 173.56523 * 20 15 14 40 40 H 1.08995 * 109.49216 * 183.33183 * 21 20 15 41 41 H 1.08998 * 109.51640 * 63.26172 * 21 20 15 42 42 H 1.09002 * 109.49484 * 178.44258 * 23 22 21 43 43 H 1.09000 * 109.51854 * 58.36990 * 23 22 21 44 44 H 1.09005 * 109.51372 * 186.42787 * 24 15 14 45 45 H 1.09002 * 109.51986 * 306.54398 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5873 0.0227 2.4790 6 1 1.0663 0.9636 2.3796 7 6 1.8383 -0.4975 3.7309 8 7 2.4723 -1.6433 3.8518 9 14 1.2765 0.4245 5.2552 10 1 0.5908 1.6781 4.8509 11 1 0.3377 -0.4259 6.0302 12 1 2.4549 0.7546 6.0965 13 7 2.0196 -0.6924 -1.1995 14 6 1.5440 -2.0938 -1.2345 15 6 2.6586 -2.9268 -1.8830 16 6 3.7993 -1.9341 -2.1803 17 6 3.5036 -0.7678 -1.2024 18 1 3.8788 -0.9976 -0.2052 19 6 4.1093 0.5380 -1.7210 20 6 2.1624 -3.5578 -3.1808 21 6 1.0768 -4.5891 -2.8568 22 8 1.6014 -5.5585 -1.9472 23 6 2.0157 -5.0191 -0.6902 24 6 3.1426 -4.0068 -0.9193 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6418 -1.7357 1.2711 29 1 3.1292 -0.7591 1.2277 30 1 2.6486 -2.0095 4.7326 31 1 1.3555 -2.4484 -0.2212 32 1 0.6331 -2.1632 -1.8291 33 1 4.7684 -2.3834 -1.9635 34 1 3.7537 -1.5921 -3.2142 35 1 3.8204 1.3585 -1.0642 36 1 5.1957 0.4525 -1.7394 37 1 3.7432 0.7333 -2.7289 38 1 1.7481 -2.7839 -3.8269 39 1 2.9927 -4.0500 -3.6872 40 1 0.7608 -5.0851 -3.7744 41 1 0.2227 -4.0879 -2.4015 42 1 2.3750 -5.8244 -0.0495 43 1 1.1721 -4.5221 -0.2113 44 1 4.0073 -4.5149 -1.3463 45 1 3.4210 -3.5494 0.0302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592183007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:26 Heat of formation + Delta-G solvation = -58.733670 kcal Electronic energy + Delta-G solvation = -22490.401336 eV Core-core repulsion = 19506.983868 eV Total energy + Delta-G solvation = -2983.417468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41973 -37.93888 -34.82456 -32.82622 -31.97760 -31.02857 -29.29578 -27.33236 -26.88138 -25.01465 -23.54176 -23.28441 -22.60750 -20.32645 -19.04994 -17.91589 -16.66367 -15.96838 -15.88719 -15.23876 -14.90482 -14.56106 -14.26677 -14.00952 -13.62355 -13.35896 -13.11277 -12.47121 -12.34187 -12.27716 -11.95197 -11.77961 -11.64101 -11.36685 -11.13337 -11.05673 -11.00770 -10.89801 -10.73651 -10.59658 -10.43545 -10.26901 -10.07904 -9.89163 -9.77366 -9.52758 -9.21045 -9.08985 -8.36573 -7.48855 -6.04970 -4.06100 3.27221 3.35481 3.39109 4.03221 4.41267 4.58392 4.74853 4.81419 5.00107 5.18256 5.28986 5.30341 5.38751 5.46120 5.57448 5.62864 5.77054 5.83377 5.87055 5.92953 5.98331 6.02018 6.03698 6.09710 6.11786 6.21876 6.25266 6.28468 6.30002 6.39593 6.52289 6.55124 6.59756 6.66033 6.86459 6.94187 7.00915 7.35015 7.46935 7.54055 7.75108 7.81163 7.99073 8.40187 8.99603 9.57442 11.06079 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019705 B = 0.006279 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.649859 B = 4458.353343 C = 5056.723152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.003 4.003 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.511 5.511 14 C 0.039 3.961 15 C -0.068 4.068 16 C -0.106 4.106 17 C 0.051 3.949 18 H 0.071 0.929 19 C -0.130 4.130 20 C -0.136 4.136 21 C 0.059 3.941 22 O -0.388 6.388 23 C 0.061 3.939 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -3.335 -12.810 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.038 4.038 3 H 0.087 0.913 4 C -0.041 4.041 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.235 5.235 14 C -0.089 4.089 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.057 4.057 18 H 0.089 0.911 19 C -0.188 4.188 20 C -0.174 4.174 21 C -0.018 4.018 22 O -0.307 6.307 23 C -0.016 4.016 24 C -0.180 4.180 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.470 -3.335 -13.173 13.596 hybrid contribution 0.031 0.323 1.855 1.883 sum 0.501 -3.012 -11.318 11.723 Atomic orbital electron populations 1.21682 0.95415 1.00881 1.00471 1.21911 0.94985 0.97947 0.88977 0.91340 1.19712 0.96181 0.96325 0.91872 1.21190 1.36643 1.06543 0.90755 0.92523 1.24997 0.95266 0.94981 0.99087 1.69957 1.41505 1.18610 1.23332 0.86589 0.78440 0.80007 0.83305 1.19725 1.21066 1.21085 1.65112 1.06234 1.13132 1.39007 1.22995 0.96577 0.88871 1.00466 1.21021 0.96106 0.94895 0.94855 1.22568 0.97127 0.95163 0.99562 1.22867 0.89488 0.94682 0.98688 0.91122 1.21611 0.99049 0.97100 1.01054 1.22131 0.99318 0.98656 0.97259 1.22613 0.95302 0.90598 0.93246 1.87863 1.82371 1.34289 1.26153 1.22624 0.96653 0.97154 0.85147 1.22203 0.98633 0.96580 1.00560 0.91630 0.94355 0.93825 0.95873 0.96596 0.93130 0.91752 0.91572 0.91690 0.91242 0.92617 0.93084 0.92675 0.90728 0.91494 0.89430 0.93044 0.89032 0.92694 0.91496 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.87 37.16 0.33 -2.11 16 2 C 0.07 1.42 2.43 -67.71 -0.16 1.26 16 3 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 4 C 0.00 -0.08 3.85 -27.88 -0.11 -0.19 16 5 C -0.51 -13.94 8.28 -34.44 -0.29 -14.23 16 6 H 0.06 1.52 7.08 -52.48 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.51 -9.10 5.02 -214.80 -1.08 -10.18 16 14 C 0.04 0.65 3.57 -2.93 -0.01 0.64 16 15 C -0.07 -0.98 0.62 -154.05 -0.09 -1.08 16 16 C -0.11 -1.51 5.59 -25.07 -0.14 -1.65 16 17 C 0.05 0.85 2.75 -65.70 -0.18 0.67 16 18 H 0.07 1.40 5.53 -51.93 -0.29 1.11 16 19 C -0.13 -1.94 9.49 37.16 0.35 -1.59 16 20 C -0.14 -1.68 4.60 -26.83 -0.12 -1.80 16 21 C 0.06 0.74 6.63 37.26 0.25 0.98 16 22 O -0.39 -5.68 10.75 -35.23 -0.38 -6.06 16 23 C 0.06 0.89 6.64 37.26 0.25 1.14 16 24 C -0.14 -2.11 4.58 -26.82 -0.12 -2.24 16 25 H 0.06 1.33 6.88 -51.93 -0.36 0.97 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.83 7.05 -51.93 -0.37 0.46 16 28 H 0.02 0.61 6.09 -51.93 -0.32 0.30 16 29 H 0.02 0.42 5.89 -51.93 -0.31 0.12 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.06 1.25 4.01 -51.93 -0.21 1.05 16 32 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 33 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 34 H 0.07 0.92 7.74 -51.93 -0.40 0.52 16 35 H 0.05 0.89 7.51 -51.93 -0.39 0.49 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.65 6.94 -51.93 -0.36 0.29 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.86 7.01 -51.93 -0.36 0.50 16 44 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -28.59 328.57 -8.75 -37.34 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.81 Total: 1.63 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.15 Total: -18.67 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.34 Total: -35.52 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.59 -8.75 -37.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592183007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.390 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds