Wall clock time and date at job start Mon Mar 30 2020 00:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 H 1.08999 * 109.46990 * 54.99384 * 3 2 1 5 5 C 1.53005 * 109.46865 * 295.00343 * 3 2 1 6 6 C 1.52995 * 109.47403 * 174.99925 * 3 2 1 7 7 H 1.09005 * 109.47180 * 60.00400 * 6 3 2 8 8 C 1.53001 * 109.47057 * 180.02562 * 6 3 2 9 9 C 1.50700 * 109.46989 * 299.99909 * 6 3 2 10 10 O 1.21273 * 120.00239 * 337.33486 * 9 6 3 11 11 N 1.34776 * 119.99828 * 157.33762 * 9 6 3 12 12 C 1.46929 * 120.63335 * 174.61179 * 11 9 6 13 13 C 1.53184 * 108.77542 * 126.40896 * 12 11 9 14 14 C 1.53041 * 109.31594 * 54.64077 * 13 12 11 15 15 C 1.53048 * 109.53403 * 298.63132 * 14 13 12 16 16 H 1.08997 * 109.49685 * 301.37971 * 15 14 13 17 17 C 1.50704 * 109.49707 * 181.31350 * 15 14 13 18 18 H 1.08003 * 119.99901 * 240.00127 * 17 15 14 19 19 C 1.37875 * 119.99793 * 59.72518 * 17 15 14 20 20 N 1.31516 * 120.00387 * 0.27615 * 19 17 15 21 21 Si 1.86802 * 119.99826 * 180.27446 * 19 17 15 22 22 H 1.48499 * 109.47208 * 60.00319 * 21 19 17 23 23 H 1.48501 * 109.46840 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47052 * 299.99913 * 21 19 17 25 25 C 1.46928 * 120.62942 * 354.62860 * 11 9 6 26 26 H 1.09008 * 109.46957 * 59.99832 * 1 2 3 27 27 H 1.08998 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46926 * 300.00146 * 1 2 3 29 29 H 1.08999 * 109.47389 * 240.00414 * 2 1 3 30 30 H 1.09001 * 109.47108 * 119.99826 * 2 1 3 31 31 H 1.08997 * 109.46969 * 299.99021 * 5 3 2 32 32 H 1.08997 * 109.47615 * 59.99516 * 5 3 2 33 33 H 1.09009 * 109.46913 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47216 * 52.98052 * 8 6 3 35 35 H 1.09001 * 109.47250 * 172.98470 * 8 6 3 36 36 H 1.09003 * 109.47054 * 292.97859 * 8 6 3 37 37 H 1.08998 * 109.57934 * 6.62425 * 12 11 9 38 38 H 1.08992 * 109.70246 * 246.27121 * 12 11 9 39 39 H 1.08997 * 109.50466 * 294.68480 * 13 12 11 40 40 H 1.09005 * 109.52667 * 174.60389 * 13 12 11 41 41 H 1.08999 * 109.46654 * 178.61350 * 14 13 12 42 42 H 1.08998 * 109.45801 * 58.64864 * 14 13 12 43 43 H 0.97000 * 120.00373 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.58224 * 113.80415 * 25 11 9 45 45 H 1.08996 * 109.59180 * 353.37779 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 3.9995 0.9053 -0.7161 8 6 4.0748 2.8869 0.1264 9 6 3.9635 0.7706 1.4135 10 8 3.1739 0.7013 2.3313 11 7 5.1976 0.2451 1.5451 12 6 5.6419 -0.3095 2.8311 13 6 6.1399 -1.7404 2.6052 14 6 7.2163 -1.7359 1.5173 15 6 6.6172 -1.2206 0.2067 16 1 5.7807 -1.8554 -0.0853 17 6 7.6692 -1.2469 -0.8720 18 1 7.9564 -0.3319 -1.3687 19 6 8.2692 -2.4382 -1.2208 20 7 7.9196 -3.5525 -0.6160 21 14 9.5788 -2.4697 -2.5525 22 1 10.7139 -1.6004 -2.1512 23 1 10.0622 -3.8614 -2.7385 24 1 9.0009 -1.9724 -3.8269 25 6 6.1244 0.2163 0.4053 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5876 -2.1492 32 1 0.5490 2.1253 -1.3970 33 1 1.9983 3.1544 -1.3072 34 1 3.5473 3.4584 0.8901 35 1 5.1436 2.8943 0.3403 36 1 3.8968 3.3356 -0.8509 37 1 4.8075 -0.3195 3.5324 38 1 6.4508 0.2997 3.2342 39 1 5.3076 -2.3701 2.2909 40 1 6.5611 -2.1302 3.5320 41 1 7.5900 -2.7495 1.3719 42 1 8.0372 -1.0866 1.8214 43 1 8.3415 -4.3907 -0.8616 44 1 6.9735 0.8690 0.6083 45 1 5.6086 0.5532 -0.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:26 Heat of formation + Delta-G solvation = -70.958160 kcal Electronic energy + Delta-G solvation = -21945.468081 eV Core-core repulsion = 18961.520519 eV Total energy + Delta-G solvation = -2983.947562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02289 -37.33222 -36.02219 -33.36375 -32.57415 -31.16734 -30.09798 -28.45284 -25.87748 -25.08938 -24.49227 -22.54526 -21.47314 -20.31774 -19.32256 -18.12480 -16.92759 -16.11990 -15.62939 -14.92216 -14.74868 -14.54229 -14.13724 -13.52678 -13.42733 -13.25313 -12.83021 -12.72647 -12.65716 -12.42775 -12.12941 -11.92106 -11.83665 -11.59435 -11.53065 -11.20484 -11.01229 -10.88594 -10.80732 -10.47848 -10.38560 -10.27074 -10.15958 -9.97148 -9.75180 -9.56036 -9.03149 -8.87610 -8.42722 -7.86928 -6.06626 -4.15377 3.12270 3.26579 3.32239 3.33667 3.59331 4.36643 4.75846 4.90532 4.99026 5.22509 5.25601 5.42854 5.46962 5.57177 5.59446 5.65506 5.69839 5.77110 5.82116 5.84247 5.96950 6.02370 6.04643 6.07762 6.13301 6.15965 6.26886 6.27485 6.30388 6.36000 6.54688 6.56784 6.60246 6.62633 6.79504 7.00725 7.17139 7.33766 7.63732 7.87001 7.97874 8.08001 8.31740 8.70607 8.88326 9.50135 10.98413 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.005596 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.918086 B = 5002.520399 C = 5490.640441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.111 4.111 7 H 0.098 0.902 8 C -0.139 4.139 9 C 0.519 3.481 10 O -0.561 6.561 11 N -0.603 5.603 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.518 4.518 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.110 3.890 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.057 0.943 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 8.880 0.967 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.132 4.132 7 H 0.116 0.884 8 C -0.196 4.196 9 C 0.307 3.693 10 O -0.441 6.441 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.557 4.557 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.012 4.012 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.612 8.641 1.452 12.286 hybrid contribution 0.957 -0.220 -0.755 1.239 sum -7.655 8.421 0.697 11.402 Atomic orbital electron populations 1.21758 0.96170 1.01172 1.01322 1.21635 0.95719 0.96346 1.02593 1.20963 0.92789 0.96864 0.98319 0.90494 1.21942 1.01174 1.00356 0.97179 1.21430 0.97340 0.97591 0.96877 0.88446 1.21731 1.01365 0.94167 1.02379 1.20531 0.81247 0.78144 0.89345 1.90596 1.50796 1.60177 1.42518 1.48310 1.14239 1.58203 1.12691 1.21540 0.99009 0.95001 0.85312 1.21983 1.00377 0.94861 0.99943 1.21625 0.95338 1.04377 0.93671 1.18974 0.96094 0.89281 0.93611 0.95218 1.21019 1.21512 0.93858 1.19307 0.92527 1.24936 0.96825 0.95598 0.96332 1.69866 1.42570 0.98561 1.41493 0.86659 0.82015 0.77044 0.82286 1.20240 1.21296 1.20233 1.22186 0.91260 1.01395 0.86327 0.92935 0.93164 0.92940 0.92292 0.91008 0.92574 0.92497 0.92573 0.92356 0.92116 0.91458 0.90385 0.92477 0.92522 0.92670 0.88690 0.94656 0.92833 0.92476 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.13 -1.80 5.18 -26.73 -0.14 -1.94 16 3 C -0.07 -0.95 1.60 -90.62 -0.14 -1.09 16 4 H 0.08 1.11 7.88 -51.93 -0.41 0.70 16 5 C -0.15 -1.61 8.60 37.16 0.32 -1.29 16 6 C -0.11 -1.63 1.52 -91.77 -0.14 -1.77 16 7 H 0.10 1.47 6.15 -51.93 -0.32 1.15 16 8 C -0.14 -1.73 8.61 37.16 0.32 -1.41 16 9 C 0.52 9.36 6.00 -10.99 -0.07 9.30 16 10 O -0.56 -11.38 14.32 5.56 0.08 -11.30 16 11 N -0.60 -11.22 2.97 -172.77 -0.51 -11.74 16 12 C 0.11 2.06 6.44 -3.71 -0.02 2.04 16 13 C -0.13 -2.57 6.08 -26.62 -0.16 -2.73 16 14 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 15 C 0.04 0.92 2.26 -91.65 -0.21 0.72 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -13.28 8.57 -34.44 -0.30 -13.58 16 18 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 19 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.36 11.30 55.43 0.63 -23.73 16 21 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 2.13 5.33 -3.71 -0.02 2.11 16 26 H 0.05 0.55 6.57 -51.92 -0.34 0.21 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.06 0.55 6.59 -51.92 -0.34 0.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 36 H 0.07 0.70 6.83 -51.93 -0.35 0.35 16 37 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 2.42 6.03 -51.93 -0.31 2.11 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.07 1.32 5.42 -51.93 -0.28 1.04 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -27.86 338.37 -8.15 -36.01 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.99 Total: 2.43 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.42 Total: -12.10 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.11 Total: -35.47 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.86 -8.15 -36.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.953 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds