Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00001 * 2 1 4 4 C 1.52996 * 109.47553 * 62.44869 * 3 2 1 5 5 C 1.53011 * 109.46903 * 182.45171 * 3 2 1 6 6 N 1.46905 * 109.46757 * 297.96818 * 5 3 2 7 7 C 1.46893 * 110.99662 * 200.02747 * 6 5 3 8 8 C 1.50707 * 109.47190 * 166.78227 * 7 6 5 9 9 H 1.07999 * 119.99707 * 3.46120 * 8 7 6 10 10 C 1.37879 * 119.99850 * 183.46258 * 8 7 6 11 11 N 1.31510 * 120.00184 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99346 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47714 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47085 * 120.00167 * 12 10 8 15 15 H 1.48501 * 109.46975 * 239.99459 * 12 10 8 16 16 C 1.46894 * 111.00114 * 76.07458 * 6 5 3 17 17 C 1.52997 * 109.47225 * 54.08893 * 16 6 5 18 18 C 1.52998 * 117.50410 * 242.90870 * 17 16 6 19 19 C 1.53004 * 117.50172 * 174.24446 * 17 16 6 20 20 C 1.52997 * 109.47017 * 302.44530 * 3 2 1 21 21 C 1.53002 * 117.50121 * 296.83884 * 20 3 2 22 22 C 1.53002 * 117.50009 * 228.21512 * 20 3 2 23 23 H 1.09002 * 109.47414 * 175.34434 * 1 2 3 24 24 H 1.09002 * 109.46926 * 295.34004 * 1 2 3 25 25 H 1.08992 * 109.47087 * 55.33898 * 1 2 3 26 26 H 1.08997 * 109.47090 * 299.99820 * 4 3 2 27 27 H 1.09004 * 109.46971 * 59.99946 * 4 3 2 28 28 H 1.09003 * 109.46969 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47088 * 57.96530 * 5 3 2 30 30 H 1.08994 * 109.46950 * 177.97022 * 5 3 2 31 31 H 1.08999 * 109.47693 * 286.78451 * 7 6 5 32 32 H 1.09004 * 109.47383 * 46.78718 * 7 6 5 33 33 H 0.97000 * 119.99521 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47044 * 174.09102 * 16 6 5 35 35 H 1.09007 * 109.47032 * 294.09467 * 16 6 5 36 36 H 1.09003 * 115.54933 * 28.57762 * 17 16 6 37 37 H 1.09005 * 117.49713 * 359.97438 * 18 17 16 38 38 H 1.08996 * 117.50341 * 145.02281 * 18 17 16 39 39 H 1.08997 * 117.49823 * 214.98018 * 19 17 16 40 40 H 1.09000 * 117.49265 * 0.02562 * 19 17 16 41 41 H 1.08999 * 115.56203 * 82.52752 * 20 3 2 42 42 H 1.08998 * 117.50008 * 145.02307 * 21 20 3 43 43 H 1.08994 * 117.50110 * 359.97438 * 21 20 3 44 44 H 1.08994 * 117.49861 * 359.97438 * 22 20 3 45 45 H 1.09007 * 117.50049 * 214.98230 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6082 2.0428 1.2788 5 6 3.5343 1.1851 -0.0617 6 7 4.0183 0.4778 1.1315 7 6 5.4444 0.7458 1.3599 8 6 5.8272 0.2839 2.7424 9 1 5.0997 -0.2144 3.3659 10 6 7.1062 0.4976 3.2111 11 7 7.9921 1.1040 2.4516 12 14 7.5807 -0.0757 4.9245 13 1 6.4122 -0.7255 5.5705 14 1 8.6987 -1.0485 4.8290 15 1 8.0087 1.0919 5.7362 16 6 3.7639 -0.9652 1.0275 17 6 4.3619 -1.4958 -0.2770 18 6 3.3973 -2.0843 -1.3085 19 6 4.3208 -3.0075 -0.5096 20 6 1.5106 2.0860 -1.2173 21 6 1.8785 1.5477 -2.6015 22 6 2.5546 2.8123 -2.0680 23 1 -0.3634 -1.0243 -0.0834 24 1 -0.3633 0.4398 0.9288 25 1 -0.3633 0.5844 -0.8452 26 1 0.5225 2.1285 1.3228 27 1 1.9641 1.4866 2.1461 28 1 2.0519 3.0384 1.2790 29 1 3.8190 0.6283 -0.9545 30 1 3.9762 2.1808 -0.0981 31 1 6.0382 0.2090 0.6201 32 1 5.6321 1.8158 1.2694 33 1 8.8920 1.2539 2.7813 34 1 4.2240 -1.4770 1.8727 35 1 2.6890 -1.1461 1.0344 36 1 5.2293 -0.9524 -0.6518 37 1 2.3365 -2.0939 -1.0576 38 1 3.6302 -1.9285 -2.3618 39 1 5.1608 -3.4584 -1.0378 40 1 3.8673 -3.6239 0.2666 41 1 0.5355 2.5598 -1.1044 42 1 1.1454 1.6673 -3.3992 43 1 2.4767 0.6376 -2.6449 44 1 3.5973 2.7343 -1.7601 45 1 2.2663 3.7639 -2.5147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602461264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = 14.325219 kcal Electronic energy + Delta-G solvation = -22367.056006 eV Core-core repulsion = 19386.806609 eV Total energy + Delta-G solvation = -2980.249397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69827 -37.42069 -35.88613 -34.88442 -32.48171 -30.72154 -27.50334 -26.76160 -26.13649 -23.94560 -23.00876 -22.29608 -21.78676 -21.39628 -19.50922 -18.54048 -16.47309 -16.10833 -15.58370 -15.29460 -15.05610 -14.63926 -14.52607 -13.96810 -13.62023 -13.41092 -13.16740 -12.37379 -12.12234 -11.99748 -11.79640 -11.61726 -11.46451 -11.34500 -11.10881 -10.94204 -10.89928 -10.75369 -10.57748 -10.49373 -10.22074 -10.18188 -9.97507 -9.91856 -9.53782 -9.30439 -9.11285 -8.87542 -8.36987 -7.04302 -5.96336 -3.95991 3.34759 3.42165 3.47324 3.75708 4.30347 4.40925 4.48280 4.73076 4.93010 5.07760 5.12155 5.32600 5.36505 5.41789 5.49196 5.54094 5.55378 5.64805 5.69606 5.72030 5.75959 5.85128 5.97771 6.07534 6.11295 6.14457 6.19654 6.24014 6.27366 6.33048 6.43387 6.51454 6.61020 6.64861 6.70680 6.84906 7.17823 7.39051 7.47352 7.62530 7.89904 8.19480 8.36585 8.65852 9.11996 9.67537 11.14604 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.006164 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.937814 B = 4541.340693 C = 4963.574240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.155 3.845 4 C -0.160 4.160 5 C 0.065 3.935 6 N -0.524 5.524 7 C 0.190 3.810 8 C -0.498 4.498 9 H 0.062 0.938 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.092 3.908 17 C -0.163 4.163 18 C -0.176 4.176 19 C -0.186 4.186 20 C -0.179 4.179 21 C -0.169 4.169 22 C -0.178 4.178 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.076 0.924 31 H -0.008 1.008 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -0.656 -8.595 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.276 6.276 3 C 0.116 3.884 4 C -0.218 4.218 5 C -0.064 4.064 6 N -0.246 5.246 7 C 0.064 3.936 8 C -0.536 4.536 9 H 0.081 0.919 10 C -0.147 4.147 11 N -0.541 5.541 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.037 4.037 17 C -0.183 4.183 18 C -0.213 4.213 19 C -0.224 4.224 20 C -0.198 4.198 21 C -0.206 4.206 22 C -0.215 4.215 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.010 0.990 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.689 -0.565 -8.158 15.946 hybrid contribution 0.687 -0.245 0.064 0.732 sum -13.002 -0.810 -8.094 15.337 Atomic orbital electron populations 1.22641 0.83396 1.01538 0.99534 1.88102 1.17854 1.27052 1.94573 1.21002 0.93682 0.82268 0.91492 1.22186 0.99349 1.01029 0.99213 1.22188 0.91232 0.99139 0.93836 1.62253 1.21282 1.07426 1.33617 1.19769 0.81071 0.96402 0.96312 1.21193 0.95887 1.36837 0.99724 0.91933 1.24963 0.96559 0.95586 0.97561 1.69966 1.04445 1.43069 1.36627 0.86495 0.78370 0.78314 0.84561 1.19697 1.21238 1.21160 1.21892 0.99912 0.88432 0.93448 1.23032 1.00754 0.94930 0.99604 1.22940 0.97207 1.05050 0.96070 1.22831 1.02208 0.93884 1.03459 1.22921 0.99744 1.04121 0.92969 1.22848 1.03537 0.98304 0.95869 1.23093 0.98813 0.96041 1.03586 0.90754 0.94434 0.94501 0.93999 0.89733 0.92230 0.94071 0.90582 0.98998 0.95517 0.93151 0.90727 0.89990 0.88570 0.88526 0.90545 0.89971 0.89370 0.88348 0.89519 0.88306 0.87838 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.30 101.05 1.04 1.34 16 2 O -0.36 -5.25 6.29 -35.23 -0.22 -5.47 16 3 C 0.16 2.31 0.71 -90.62 -0.06 2.24 16 4 C -0.16 -2.42 8.13 37.16 0.30 -2.11 16 5 C 0.06 1.15 2.81 -3.82 -0.01 1.14 16 6 N -0.52 -11.02 3.75 -236.07 -0.89 -11.90 16 7 C 0.19 4.86 4.60 -4.98 -0.02 4.84 16 8 C -0.50 -13.94 8.48 -34.44 -0.29 -14.23 16 9 H 0.06 1.75 7.27 -52.49 -0.38 1.37 16 10 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 12 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.09 1.81 5.09 -3.83 -0.02 1.79 16 17 C -0.16 -2.97 3.80 -90.62 -0.34 -3.32 16 18 C -0.18 -2.67 9.86 -26.69 -0.26 -2.93 16 19 C -0.19 -2.96 10.26 -26.69 -0.27 -3.23 16 20 C -0.18 -2.25 3.85 -90.62 -0.35 -2.60 16 21 C -0.17 -2.01 9.85 -26.73 -0.26 -2.27 16 22 C -0.18 -2.17 9.63 -26.73 -0.26 -2.43 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.43 6.71 -51.93 -0.35 0.08 16 25 H 0.04 0.39 6.75 -51.93 -0.35 0.04 16 26 H 0.04 0.54 6.69 -51.93 -0.35 0.19 16 27 H 0.08 1.48 7.55 -51.93 -0.39 1.09 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.74 5.14 -51.93 -0.27 0.47 16 30 H 0.08 1.39 6.22 -51.93 -0.32 1.07 16 31 H -0.01 -0.21 6.38 -51.93 -0.33 -0.54 16 32 H 0.03 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.65 6.83 -51.93 -0.35 1.30 16 35 H 0.08 1.54 5.34 -51.93 -0.28 1.26 16 36 H 0.10 1.98 6.41 -51.93 -0.33 1.64 16 37 H 0.10 1.44 7.21 -51.93 -0.37 1.07 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.30 7.42 -51.93 -0.39 0.92 16 44 H 0.10 1.40 5.85 -51.93 -0.30 1.09 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -28.92 339.67 -8.86 -37.78 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.67 Total: 4.10 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.91 Total: -20.34 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.15 Total: -38.04 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.22 Total: -5.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.92 -8.86 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602461264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.108 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds