Wall clock time and date at job start Mon Mar 30 2020 01:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47014 * 2 1 4 4 C 1.53001 * 109.46991 * 240.00110 * 2 1 3 5 5 C 1.50694 * 109.47168 * 64.99889 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.52998 * 109.47185 * 120.00059 * 2 1 3 14 14 N 1.46907 * 109.46923 * 295.00050 * 13 2 1 15 15 C 1.46898 * 110.99723 * 180.02562 * 14 13 2 16 16 C 1.53983 * 113.57850 * 252.72123 * 15 14 13 17 17 C 1.52654 * 86.73310 * 220.81542 * 16 15 14 18 18 C 1.52652 * 88.25842 * 24.79687 * 17 16 15 19 19 C 1.53434 * 115.83447 * 142.84356 * 17 16 15 20 20 O 1.44691 * 104.52729 * 106.07033 * 19 17 16 21 21 C 1.44522 * 105.48580 * 39.45468 * 20 19 17 22 22 H 1.08998 * 110.36034 * 79.03080 * 21 20 19 23 23 C 1.52998 * 110.45340 * 201.29068 * 21 20 19 24 24 C 1.53466 * 115.82294 * 266.76602 * 17 16 15 25 25 H 1.09000 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47091 * 299.99973 * 1 2 3 27 27 H 1.08996 * 109.46891 * 59.99909 * 1 2 3 28 28 H 1.08998 * 109.46837 * 304.99910 * 4 2 1 29 29 H 1.09002 * 109.46926 * 184.99714 * 4 2 1 30 30 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47109 * 54.99957 * 13 2 1 32 32 H 1.08990 * 109.47209 * 175.00380 * 13 2 1 33 33 H 1.00899 * 111.00145 * 56.04669 * 14 13 2 34 34 H 1.09004 * 112.82570 * 23.91463 * 15 14 13 35 35 H 1.08999 * 113.67075 * 335.28041 * 16 15 14 36 36 H 1.09011 * 113.67022 * 106.35903 * 16 15 14 37 37 H 1.08999 * 113.66821 * 220.74781 * 18 17 16 38 38 H 1.08998 * 113.67290 * 89.66675 * 18 17 16 39 39 H 1.09001 * 110.42520 * 224.83459 * 19 17 16 40 40 H 1.09006 * 110.42425 * 347.30900 * 19 17 16 41 41 H 1.08993 * 109.47604 * 175.50139 * 23 21 20 42 42 H 1.09005 * 109.46715 * 295.50455 * 23 21 20 43 43 H 1.08998 * 109.46987 * 55.49776 * 23 21 20 44 44 H 1.08994 * 110.59491 * 348.94921 * 24 17 16 45 45 H 1.09005 * 110.58823 * 111.72744 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3758 7 6 1.9933 -0.4017 -3.7283 8 7 1.6406 0.2747 -4.7997 9 14 2.9636 -1.9883 -3.9028 10 1 2.0244 -3.1326 -4.0201 11 1 3.8126 -1.9181 -5.1191 12 1 3.8252 -2.1756 -2.7078 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1258 -0.6265 3.6671 16 6 1.0028 -1.2975 4.4793 17 6 1.7051 -0.7647 5.7256 18 6 2.3132 0.3333 4.8568 19 6 0.7866 -0.2896 6.8591 20 8 0.8874 -1.3241 7.8657 21 6 2.2786 -1.7154 7.8789 22 1 2.8707 -0.9920 8.4393 23 6 2.4354 -3.1123 8.4831 24 6 2.7036 -1.7217 6.3908 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7198 -1.2951 29 1 3.1264 -0.7994 -1.2056 30 1 1.8885 -0.0479 -5.6802 31 1 1.6055 -1.7198 1.2951 32 1 3.1263 -0.7994 1.2056 33 1 0.6529 0.1793 2.4753 34 1 2.9844 -1.2743 3.4901 35 1 0.0190 -0.8596 4.3104 36 1 1.0018 -2.3853 4.4089 37 1 3.3572 0.5458 5.0873 38 1 1.7000 1.2322 4.7947 39 1 1.1351 0.6635 7.2570 40 1 -0.2406 -0.2022 6.5050 41 1 3.4775 -3.4239 8.4125 42 1 2.1325 -3.0914 9.5300 43 1 1.8078 -3.8167 7.9373 44 1 2.6130 -2.7232 5.9705 45 1 3.7225 -1.3509 6.2792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897777894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:14 Heat of formation + Delta-G solvation = -66.201179 kcal Electronic energy + Delta-G solvation = -20548.736925 eV Core-core repulsion = 17564.995641 eV Total energy + Delta-G solvation = -2983.741284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63889 -38.91097 -37.50081 -34.89447 -33.35665 -32.93440 -29.85411 -28.86870 -27.07306 -26.76401 -26.63965 -23.97040 -22.31642 -22.13544 -20.68603 -19.62855 -18.91186 -17.37285 -16.82291 -16.53515 -16.38014 -16.19988 -15.92799 -15.51169 -14.85660 -14.64519 -14.59797 -14.15455 -13.90698 -13.78812 -13.42370 -13.24237 -13.21552 -12.87428 -12.84032 -12.64904 -12.59646 -12.24738 -12.13495 -12.08427 -11.72166 -11.59603 -11.45298 -11.38283 -11.19550 -11.09965 -10.88369 -10.73458 -10.57715 -9.20395 -8.25882 -6.28122 1.35697 1.37658 1.49485 2.37886 2.91925 3.09348 3.21577 3.48672 3.57053 3.68865 3.95182 3.99726 4.14035 4.19289 4.25458 4.30302 4.31568 4.42013 4.52627 4.61100 4.73232 4.76143 4.82754 4.83498 4.84844 4.88004 4.90495 4.97879 5.00470 5.05496 5.10973 5.13750 5.27136 5.27728 5.31034 5.35393 5.40112 5.56495 5.71796 5.73776 5.93732 6.21513 6.35720 6.55249 6.79656 7.35367 8.90944 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040372 B = 0.003076 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.385008 B = 9101.876474 C = 9485.466638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.076 3.924 14 N -0.683 5.683 15 C 0.065 3.935 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.107 4.107 19 C 0.059 3.941 20 O -0.399 6.399 21 C 0.065 3.935 22 H 0.075 0.925 23 C -0.146 4.146 24 C -0.127 4.127 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.345 0.655 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -5.808 27.596 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.170 1.170 13 C -0.053 4.053 14 N -0.314 5.314 15 C -0.045 4.045 16 C -0.187 4.187 17 C -0.109 4.109 18 C -0.145 4.145 19 C -0.018 4.018 20 O -0.319 6.319 21 C 0.008 3.992 22 H 0.093 0.907 23 C -0.203 4.203 24 C -0.165 4.165 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.648 -5.469 27.507 28.170 hybrid contribution -0.313 -0.937 -0.988 1.397 sum 2.335 -6.406 26.519 27.382 Atomic orbital electron populations 1.21659 0.95380 1.00920 1.00659 1.20904 0.95948 0.99028 0.93240 0.92951 1.19558 0.95957 0.95610 0.93299 1.21465 1.34244 1.08684 0.91261 0.94746 1.26020 0.97063 1.01000 0.95539 1.70079 1.48994 1.41808 0.98693 0.85677 0.79339 0.79483 0.78256 1.19332 1.21205 1.17025 1.21902 0.99838 0.94451 0.89147 1.60445 1.20068 1.49699 1.01151 1.23135 0.97700 0.95334 0.88374 1.23611 0.98672 1.00755 0.95672 1.22228 0.96873 0.97513 0.94267 1.22946 1.01492 0.96770 0.93282 1.23336 1.00515 0.91033 0.86884 1.89139 1.27281 1.56277 1.59236 1.23198 0.82481 0.97628 0.95906 0.90710 1.21823 1.03105 0.94235 1.01130 1.22764 0.99372 0.99788 0.94538 0.93301 0.91614 0.94748 0.96585 0.96594 0.92698 0.95118 0.91758 0.83435 0.88928 0.89426 0.91613 0.90550 0.89357 0.91213 0.88922 0.89442 0.91974 0.92531 0.90413 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.78 71.98 0.63 -3.97 16 2 C -0.07 -2.77 2.55 -10.79 -0.03 -2.80 16 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 5 C -0.52 -29.98 8.96 25.60 0.23 -29.75 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 7 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 13 C 0.08 2.28 4.99 86.30 0.43 2.71 16 14 N -0.68 -17.09 6.62 -488.17 -3.23 -20.32 16 15 C 0.06 1.29 4.05 45.57 0.18 1.48 16 16 C -0.15 -2.60 6.95 30.81 0.21 -2.39 16 17 C -0.11 -1.69 1.17 -52.12 -0.06 -1.75 16 18 C -0.11 -1.79 7.16 30.81 0.22 -1.57 16 19 C 0.06 0.97 7.06 72.13 0.51 1.47 16 20 O -0.40 -8.04 11.35 -148.98 -1.69 -9.73 16 21 C 0.07 0.97 3.94 31.19 0.12 1.09 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 C -0.15 -1.80 9.53 71.98 0.69 -1.12 16 24 C -0.13 -1.79 5.99 31.35 0.19 -1.60 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.90 6.68 -2.39 -0.02 1.89 16 27 H 0.03 1.44 6.95 -2.39 -0.02 1.42 16 28 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 29 H 0.02 0.73 7.20 -2.39 -0.02 0.72 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 33 H 0.35 8.14 6.45 -89.69 -0.58 7.56 16 34 H 0.09 1.88 7.87 -2.38 -0.02 1.87 16 35 H 0.09 1.51 7.67 -2.39 -0.02 1.49 16 36 H 0.07 1.19 7.89 -2.38 -0.02 1.18 16 37 H 0.08 1.20 7.90 -2.39 -0.02 1.18 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.09 1.45 7.86 -2.38 -0.02 1.43 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 1.12 7.53 -2.39 -0.02 1.10 16 45 H 0.09 1.08 7.80 -2.38 -0.02 1.06 16 Total: -1.00 -66.32 346.61 1.46 -64.86 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.30 Total: 16.86 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 3.90 Total: -37.92 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.93 Total: -80.68 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.69 Total: -9.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -66.32 1.46 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897777894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.340 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds