Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47128 * 2 1 4 4 H 1.09002 * 109.46808 * 306.53927 * 3 2 1 5 5 C 1.50693 * 109.47156 * 186.53609 * 3 2 1 6 6 H 1.08004 * 120.00087 * 245.44820 * 5 3 2 7 7 C 1.37874 * 120.00133 * 65.45694 * 5 3 2 8 8 N 1.31515 * 120.00024 * 9.49686 * 7 5 3 9 9 Si 1.86804 * 120.00004 * 189.49906 * 7 5 3 10 10 H 1.48507 * 109.46930 * 84.99213 * 9 7 5 11 11 H 1.48499 * 109.47126 * 204.98691 * 9 7 5 12 12 H 1.48496 * 109.47196 * 324.99266 * 9 7 5 13 13 N 1.46499 * 109.46771 * 66.53594 * 3 2 1 14 14 C 1.34785 * 119.99989 * 274.99970 * 13 3 2 15 15 O 1.21277 * 119.99992 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99840 * 180.02562 * 14 13 3 17 17 C 1.53005 * 109.47125 * 60.00480 * 16 14 13 18 18 C 1.52998 * 109.46970 * 179.97438 * 16 14 13 19 19 C 1.53005 * 109.46951 * 60.00624 * 18 16 14 20 20 C 1.52993 * 109.47216 * 59.99417 * 19 18 16 21 21 C 1.53005 * 109.47216 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47636 * 300.00164 * 20 19 18 23 23 C 1.52995 * 109.47516 * 300.00230 * 16 14 13 24 24 H 1.08994 * 109.47598 * 299.99825 * 1 2 3 25 25 H 1.09000 * 109.47242 * 60.00256 * 1 2 3 26 26 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47598 * 240.00175 * 2 1 3 28 28 H 1.09000 * 109.47242 * 119.99744 * 2 1 3 29 29 H 0.97004 * 120.00003 * 180.02562 * 8 7 5 30 30 H 0.96994 * 120.00362 * 95.00288 * 13 3 2 31 31 H 1.08998 * 109.47303 * 179.97438 * 17 16 14 32 32 H 1.09005 * 109.46701 * 299.99800 * 17 16 14 33 33 H 1.09002 * 109.46853 * 59.99501 * 17 16 14 34 34 H 1.09000 * 109.47889 * 300.00467 * 18 16 14 35 35 H 1.08998 * 109.47298 * 180.02562 * 18 16 14 36 36 H 1.08997 * 109.47130 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.46793 * 299.99495 * 19 18 16 38 38 H 1.09001 * 109.47176 * 60.00312 * 20 19 18 39 39 H 1.09001 * 109.46793 * 60.00078 * 21 20 19 40 40 H 1.08994 * 109.47507 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47130 * 300.00674 * 21 20 19 42 42 H 1.09001 * 109.46959 * 300.00281 * 22 20 19 43 43 H 1.08992 * 109.47348 * 179.97438 * 22 20 19 44 44 H 1.09005 * 109.47094 * 59.99720 * 23 16 14 45 45 H 1.09001 * 109.47508 * 179.97438 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5842 1.9890 -0.8257 5 6 3.5382 1.4457 -0.1617 6 1 4.1672 1.8028 0.6403 7 6 4.1060 0.9927 -1.3336 8 7 3.3463 0.7347 -2.3756 9 14 5.9545 0.7454 -1.4412 10 1 6.3053 -0.5995 -0.9180 11 1 6.3868 0.8535 -2.8578 12 1 6.6409 1.7852 -0.6333 13 7 1.6842 2.0862 1.2670 14 6 0.4702 2.6519 1.4180 15 8 -0.3278 2.6277 0.5051 16 6 0.1045 3.3145 2.7211 17 6 1.0823 4.4567 3.0046 18 6 -1.3172 3.8722 2.6283 19 6 -2.2954 2.7305 2.3446 20 6 -2.2231 1.7038 3.4767 21 6 -3.2018 0.5624 3.1933 22 6 -0.8015 1.1461 3.5695 23 6 0.1773 2.2881 3.8533 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7458 0.4156 -3.2000 30 1 2.3223 2.1053 1.9973 31 1 0.8175 4.9363 3.9469 32 1 2.0953 4.0598 3.0705 33 1 1.0303 5.1880 2.1979 34 1 -1.3688 4.6037 1.8218 35 1 -1.5816 4.3519 3.5707 36 1 -3.3082 3.1278 2.2780 37 1 -2.0309 2.2512 1.4020 38 1 -2.4877 2.1831 4.4192 39 1 -2.9377 0.0830 2.2507 40 1 -3.1507 -0.1688 4.0000 41 1 -4.2145 0.9600 3.1274 42 1 -0.5369 0.6669 2.6269 43 1 -0.7499 0.4151 4.3763 44 1 1.1903 1.8911 3.9193 45 1 -0.0868 2.7675 4.7960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120632483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -95.237890 kcal Electronic energy + Delta-G solvation = -22568.405357 eV Core-core repulsion = 19583.404947 eV Total energy + Delta-G solvation = -2985.000410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69952 -38.65172 -36.74013 -35.07928 -34.15402 -32.61252 -31.52551 -29.51556 -28.83456 -25.52601 -25.05732 -23.62364 -23.47749 -21.54760 -21.02338 -20.38561 -18.43992 -17.28629 -17.05032 -16.39312 -15.99900 -15.62905 -15.12543 -15.11962 -14.75994 -14.67739 -14.49007 -14.03872 -13.52814 -13.34869 -13.25484 -13.15515 -13.01081 -12.94787 -12.89145 -12.63318 -12.53612 -12.37016 -12.18357 -12.08383 -12.04569 -11.81363 -11.53924 -11.22134 -11.06936 -10.93957 -10.78580 -10.52910 -10.07533 -9.50409 -8.18745 -6.31571 1.43384 1.44493 1.53906 2.03881 2.37925 2.75973 3.12777 3.71452 3.80482 3.88945 4.08575 4.20160 4.33463 4.44767 4.46836 4.53063 4.60022 4.69051 4.71325 4.74664 4.81360 4.84667 4.90820 5.00043 5.05686 5.06840 5.08774 5.19560 5.19966 5.26160 5.31117 5.35169 5.45057 5.47744 5.48477 5.52767 5.60190 5.65612 5.75850 5.86436 6.00062 6.12726 6.78950 7.13012 7.35742 7.74414 8.89803 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.005862 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.834435 B = 4775.111432 C = 5211.209638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.706 5.706 14 C 0.510 3.490 15 O -0.581 6.581 16 C -0.077 4.077 17 C -0.137 4.137 18 C -0.086 4.086 19 C -0.130 4.130 20 C -0.083 4.083 21 C -0.146 4.146 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.398 0.602 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 3.165 16.328 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.148 4.148 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.355 5.355 14 C 0.297 3.703 15 O -0.463 6.463 16 C -0.080 4.080 17 C -0.195 4.195 18 C -0.124 4.124 19 C -0.167 4.167 20 C -0.101 4.101 21 C -0.203 4.203 22 C -0.163 4.163 23 C -0.137 4.137 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.232 0.768 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.736 3.082 15.475 17.573 hybrid contribution 1.192 -0.299 -0.880 1.512 sum -6.543 2.782 14.594 16.234 Atomic orbital electron populations 1.21813 0.96776 0.99046 1.01074 1.21656 0.94067 0.99177 0.99856 1.18273 0.93682 0.88989 0.81481 0.98391 1.21560 0.91697 1.43853 1.01469 0.91175 1.25768 1.02965 0.94873 0.94733 1.70146 1.37530 1.45219 1.02708 0.85465 0.79450 0.79032 0.77044 1.19607 1.21479 1.18746 1.46248 1.15516 1.56702 1.16985 1.21095 0.81318 0.77820 0.90043 1.90579 1.50320 1.61005 1.44347 1.20908 0.97905 0.97009 0.92148 1.21847 0.98236 0.96514 1.02865 1.21324 0.91886 0.97335 1.01845 1.21813 0.98620 0.96685 0.99603 1.21091 0.94486 0.95692 0.98859 1.21811 0.99167 0.98362 1.00949 1.21756 0.95144 0.98084 1.01279 1.21607 0.99927 0.94857 0.97299 0.91789 0.96069 0.94028 0.93553 0.93605 0.92746 0.76776 0.88664 0.91896 0.93774 0.93725 0.88919 0.92123 0.92497 0.89426 0.94888 0.91611 0.92097 0.94354 0.90359 0.91300 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.55 71.98 0.62 -5.29 16 2 C -0.11 -5.34 5.50 30.60 0.17 -5.17 16 3 C 0.28 14.41 2.09 44.25 0.09 14.50 16 4 H 0.00 -0.12 7.52 -2.39 -0.02 -0.13 16 5 C -0.55 -29.22 8.66 25.60 0.22 -29.00 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.92 5.14 84.65 0.44 1.36 16 8 N -0.92 -54.05 12.17 21.45 0.26 -53.79 16 9 Si 0.97 42.50 29.55 68.60 2.03 44.53 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 13 N -0.71 -28.96 4.82 -446.09 -2.15 -31.11 16 14 C 0.51 19.64 3.83 87.66 0.34 19.98 16 15 O -0.58 -27.15 10.80 -3.02 -0.03 -27.18 16 16 C -0.08 -2.07 0.62 -52.93 -0.03 -2.10 16 17 C -0.14 -3.14 8.37 71.98 0.60 -2.54 16 18 C -0.09 -2.22 4.37 30.60 0.13 -2.09 16 19 C -0.13 -3.60 4.91 30.59 0.15 -3.45 16 20 C -0.08 -1.87 2.72 -10.80 -0.03 -1.90 16 21 C -0.15 -3.20 9.20 71.98 0.66 -2.54 16 22 C -0.13 -3.04 4.99 30.61 0.15 -2.89 16 23 C -0.10 -2.16 4.64 30.61 0.14 -2.01 16 24 H 0.06 2.75 3.34 -2.39 -0.01 2.75 16 25 H 0.02 1.04 7.93 -2.39 -0.02 1.02 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 2.55 6.78 -2.39 -0.02 2.53 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.40 14.13 7.36 -92.71 -0.68 13.45 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.42 7.57 -2.38 -0.02 1.40 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 2.09 5.51 -2.39 -0.01 2.08 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 1.21 4.98 -2.39 -0.01 1.20 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.47 7.56 -2.38 -0.02 1.46 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.87 332.65 4.02 -61.84 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.27 Total: 28.84 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.65 Total: -23.13 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.89 Total: -84.90 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.03 Total: -27.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.87 4.02 -61.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120632483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.394 kcal (2) G-P(sol) polarization free energy of solvation -65.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds