Wall clock time and date at job start Mon Mar 30 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 H 1.08996 * 109.47625 * 54.99648 * 3 2 1 5 5 C 1.53001 * 109.46922 * 294.99616 * 3 2 1 6 6 C 1.53000 * 109.47023 * 175.00112 * 3 2 1 7 7 C 1.53001 * 109.46866 * 299.99538 * 6 3 2 8 8 C 1.53005 * 109.46842 * 180.02562 * 7 6 3 9 9 C 1.52990 * 109.47239 * 60.00147 * 8 7 6 10 10 N 1.46499 * 109.47333 * 60.00001 * 9 8 7 11 11 C 1.34784 * 119.99971 * 154.99849 * 10 9 8 12 12 O 1.21274 * 119.99897 * 359.72827 * 11 10 9 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.50707 * 109.47011 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99794 * 359.97438 * 14 13 11 16 16 C 1.37876 * 119.99997 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46978 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47000 * 119.99905 * 18 16 14 21 21 H 1.48501 * 109.47339 * 240.00023 * 18 16 14 22 22 C 1.53001 * 109.47084 * 299.99705 * 9 8 7 23 23 C 1.52999 * 109.47023 * 179.97438 * 6 3 2 24 24 H 1.09006 * 109.47015 * 60.00110 * 1 2 3 25 25 H 1.08992 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47460 * 300.00645 * 1 2 3 27 27 H 1.08993 * 109.47277 * 239.99964 * 2 1 3 28 28 H 1.08998 * 109.47165 * 119.99286 * 2 1 3 29 29 H 1.09005 * 109.47307 * 180.02562 * 5 3 2 30 30 H 1.08996 * 109.47521 * 300.00461 * 5 3 2 31 31 H 1.09000 * 109.47380 * 60.00626 * 5 3 2 32 32 H 1.08996 * 109.47001 * 59.99796 * 6 3 2 33 33 H 1.08991 * 109.46933 * 60.00463 * 7 6 3 34 34 H 1.08996 * 109.46997 * 299.99982 * 7 6 3 35 35 H 1.08996 * 109.47029 * 299.99618 * 8 7 6 36 36 H 1.08997 * 109.46727 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.47194 * 180.02562 * 9 8 7 38 38 H 0.96999 * 119.99984 * 334.99697 * 10 9 8 39 39 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 40 40 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 41 41 H 0.96998 * 119.99718 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.47307 * 180.02562 * 22 9 8 43 43 H 1.09000 * 109.47576 * 299.99695 * 22 9 8 44 44 H 1.09007 * 109.46879 * 299.99799 * 23 6 3 45 45 H 1.08996 * 109.47625 * 59.99536 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 3.9695 0.7603 1.4331 8 6 5.4944 0.7627 1.5591 9 6 6.0038 2.2053 1.5593 10 7 5.4193 2.9296 2.6907 11 6 6.0543 4.0012 3.2054 12 8 7.1120 4.3630 2.7351 13 6 5.4526 4.7465 4.3688 14 6 6.3522 5.8942 4.7495 15 1 7.2681 6.0663 4.2038 16 6 6.0063 6.7237 5.7951 17 7 4.8916 6.5131 6.4605 18 14 7.1217 8.1457 6.2674 19 1 8.3051 8.1656 5.3705 20 1 6.3779 9.4239 6.1330 21 1 7.5685 7.9785 7.6737 22 6 5.5991 2.8893 0.2519 23 6 4.0748 2.8868 0.1251 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.9990 3.1541 -1.3077 30 1 2.0698 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3970 32 1 3.9994 0.9053 -0.7161 33 1 3.6062 -0.2672 1.4331 34 1 3.5349 1.2995 2.2748 35 1 5.9293 0.2239 0.7174 36 1 5.7827 0.2751 2.4903 37 1 7.0902 2.2070 1.6486 38 1 4.5752 2.6378 3.0693 39 1 4.4728 5.1316 4.0861 40 1 5.3463 4.0707 5.2174 41 1 4.6481 7.0970 7.1958 42 1 5.9625 3.9170 0.2518 43 1 6.0341 2.3505 -0.5899 44 1 3.7865 3.3737 -0.8066 45 1 3.6402 3.4263 0.9665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:05 Heat of formation + Delta-G solvation = -86.415587 kcal Electronic energy + Delta-G solvation = -21179.510156 eV Core-core repulsion = 18194.892310 eV Total energy + Delta-G solvation = -2984.617846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92362 -38.09509 -35.90551 -32.88037 -32.67443 -31.03544 -30.32159 -28.89203 -27.89468 -24.85767 -23.62124 -22.46567 -21.79424 -20.16628 -19.88608 -18.75081 -16.32874 -16.25760 -15.55344 -15.29359 -14.75648 -14.58149 -14.44628 -14.06259 -13.66091 -13.49017 -13.39193 -12.82952 -12.69678 -12.43377 -12.24424 -12.10298 -12.00381 -11.71594 -11.57405 -11.24763 -11.03760 -11.00295 -10.92732 -10.73237 -10.64734 -10.58225 -10.37468 -9.94934 -9.90421 -9.75723 -9.21182 -8.55390 -8.42373 -8.30505 -6.02600 -4.01530 3.35335 3.42246 3.51078 3.80929 4.02311 4.51318 4.53994 4.60856 4.71806 4.85626 5.02058 5.11227 5.26018 5.28550 5.35746 5.37654 5.40753 5.46608 5.50774 5.59754 5.65958 5.69294 5.77151 5.80605 5.85533 5.90314 5.94437 6.00769 6.10004 6.13578 6.19016 6.24628 6.28058 6.37329 6.51904 6.52999 6.58120 7.17738 7.28441 7.37939 7.99829 8.13479 8.52902 9.10055 9.33711 9.63699 11.09943 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.003961 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.702053 B = 7067.455614 C = 7477.273484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.150 4.150 6 C -0.080 4.080 7 C -0.117 4.117 8 C -0.125 4.125 9 C 0.145 3.855 10 N -0.740 5.740 11 C 0.514 3.486 12 O -0.548 6.548 13 C 0.004 3.996 14 C -0.505 4.505 15 H 0.075 0.925 16 C 0.053 3.947 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.129 4.129 23 C -0.113 4.113 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 -14.570 -13.750 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.207 4.207 6 C -0.098 4.098 7 C -0.154 4.154 8 C -0.163 4.163 9 C 0.040 3.960 10 N -0.395 5.395 11 C 0.304 3.696 12 O -0.424 6.424 13 C -0.036 4.036 14 C -0.543 4.543 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.168 4.168 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.227 0.773 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.297 -14.221 -13.943 21.210 hybrid contribution 0.019 0.614 0.517 0.802 sum -7.278 -13.607 -13.426 20.454 Atomic orbital electron populations 1.21832 0.96212 1.01234 1.01886 1.21642 0.95593 0.96722 1.01935 1.21207 0.95222 0.95858 0.98421 0.91092 1.21929 1.00922 1.00780 0.97085 1.21188 0.94384 0.96541 0.97682 1.21651 0.95539 1.00527 0.97722 1.21798 0.96091 0.96141 1.02263 1.20739 0.98554 0.90332 0.86407 1.46409 1.26314 1.32095 1.34715 1.21952 0.84450 0.78719 0.84468 1.90520 1.23123 1.66545 1.62226 1.19236 0.97850 0.95781 0.90694 1.21222 1.07293 1.10674 1.15150 0.90673 1.25010 0.95434 0.98062 0.96187 1.69973 1.23305 1.38992 1.21895 0.86397 0.80861 0.81818 0.78188 1.19495 1.21050 1.21043 1.21891 0.95971 1.01751 0.97151 1.21585 0.95653 0.95903 1.01944 0.92673 0.93154 0.92740 0.92339 0.91626 0.92308 0.93028 0.92811 0.91513 0.91688 0.91819 0.91145 0.91516 0.90206 0.77260 0.93652 0.93639 0.93038 0.91356 0.92021 0.92130 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.12 -0.97 5.19 -26.73 -0.14 -1.11 16 3 C -0.09 -0.80 1.97 -90.62 -0.18 -0.98 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -1.29 8.60 37.16 0.32 -0.97 16 6 C -0.08 -0.78 1.78 -90.62 -0.16 -0.94 16 7 C -0.12 -1.15 4.69 -26.73 -0.13 -1.28 16 8 C -0.12 -1.38 5.61 -26.73 -0.15 -1.53 16 9 C 0.15 2.12 2.78 -67.94 -0.19 1.93 16 10 N -0.74 -12.69 4.23 -53.81 -0.23 -12.92 16 11 C 0.51 11.77 7.79 -10.98 -0.09 11.69 16 12 O -0.55 -14.38 15.12 5.56 0.08 -14.30 16 13 C 0.00 0.09 5.46 -29.03 -0.16 -0.06 16 14 C -0.50 -14.86 8.92 -34.44 -0.31 -15.17 16 15 H 0.08 2.32 6.75 -52.49 -0.35 1.96 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 18 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.13 -1.77 5.60 -26.75 -0.15 -1.92 16 23 C -0.11 -1.35 4.69 -26.75 -0.13 -1.48 16 24 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.52 6.17 -51.93 -0.32 0.20 16 29 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.56 6.32 -51.93 -0.33 0.23 16 34 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 38 H 0.39 5.92 6.87 -40.82 -0.28 5.64 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.68 6.43 -51.92 -0.33 0.35 16 45 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -31.77 341.49 -8.44 -40.21 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.97 Total: 1.63 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.19 Total: -11.16 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.51 Total: -38.90 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.77 -8.44 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.206 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds