Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47231 * 2 1 4 4 C 1.53002 * 109.47029 * 119.99887 * 2 1 3 5 5 C 1.53005 * 109.47298 * 59.99789 * 4 2 1 6 6 C 1.52996 * 109.47095 * 59.99886 * 5 4 2 7 7 C 1.53002 * 109.47141 * 300.00211 * 6 5 4 8 8 H 1.08998 * 109.47344 * 299.99683 * 7 6 5 9 9 C 1.53008 * 109.46991 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46706 * 65.00198 * 9 7 6 11 11 N 1.46898 * 109.46980 * 179.97438 * 10 9 7 12 12 C 1.47482 * 111.00181 * 74.02833 * 11 10 9 13 13 C 1.53511 * 87.93512 * 138.70387 * 12 11 10 14 14 O 1.42901 * 114.16884 * 87.62134 * 13 12 11 15 15 C 1.50694 * 114.17031 * 220.32752 * 13 12 11 16 16 H 1.08006 * 120.00072 * 99.31849 * 15 13 12 17 17 C 1.37877 * 120.00272 * 279.31773 * 15 13 12 18 18 N 1.31507 * 119.99949 * 10.18944 * 17 15 13 19 19 Si 1.86804 * 120.00013 * 190.18848 * 17 15 13 20 20 H 1.48502 * 109.46854 * 84.99283 * 19 17 15 21 21 H 1.48491 * 109.47057 * 204.99395 * 19 17 15 22 22 H 1.48497 * 109.47139 * 324.99596 * 19 17 15 23 23 C 1.47479 * 111.00198 * 169.99543 * 11 10 9 24 24 C 1.52994 * 109.47104 * 60.00173 * 7 6 5 25 25 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47022 * 300.00543 * 1 2 3 27 27 H 1.08997 * 109.47076 * 60.00053 * 1 2 3 28 28 H 1.08998 * 109.47344 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.46867 * 299.99664 * 4 2 1 30 30 H 1.08998 * 109.46926 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.46712 * 300.00018 * 5 4 2 32 32 H 1.09007 * 109.46729 * 60.00098 * 6 5 4 33 33 H 1.08999 * 109.47393 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46800 * 185.00000 * 9 7 6 35 35 H 1.08997 * 109.46913 * 305.00184 * 9 7 6 36 36 H 1.09004 * 109.47370 * 299.99450 * 10 9 7 37 37 H 1.08996 * 109.47331 * 59.99539 * 10 9 7 38 38 H 1.09010 * 113.47563 * 253.47291 * 12 11 10 39 39 H 1.09002 * 113.47483 * 23.93598 * 12 11 10 40 40 H 0.96702 * 113.99830 * 90.17000 * 14 13 12 41 41 H 0.97003 * 120.00458 * 180.02562 * 18 17 15 42 42 H 1.08996 * 113.47528 * 336.06715 * 23 11 10 43 43 H 1.09004 * 113.47212 * 106.47034 * 23 11 10 44 44 H 1.09007 * 109.47208 * 180.02562 * 24 7 6 45 45 H 1.09005 * 109.47872 * 60.00050 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2494 6 6 2.0398 -2.8851 0.0002 7 6 1.5299 -2.1638 -1.2491 8 1 0.4399 -2.1638 -1.2492 9 6 2.0404 -2.8848 -2.4984 10 6 1.4307 -4.2866 -2.5630 11 7 1.9203 -4.9787 -3.7627 12 6 3.3238 -5.3993 -3.5944 13 6 2.9507 -6.7230 -4.2764 14 8 3.0508 -6.6955 -5.7016 15 6 3.5892 -7.9385 -3.6553 16 1 3.0269 -8.5515 -2.9665 17 6 4.8914 -8.2681 -3.9664 18 7 5.6404 -7.4232 -4.6405 19 14 5.5916 -9.9149 -3.4301 20 1 5.2395 -10.9525 -4.4325 21 1 7.0690 -9.8127 -3.3215 22 1 5.0228 -10.2885 -2.1103 23 6 1.5484 -6.4056 -3.7385 24 6 2.0399 -0.7214 -1.2492 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1299 -0.7209 1.2496 29 1 1.6766 -0.2073 2.1392 30 1 1.8929 -2.6774 2.1396 31 1 0.4399 -2.1637 1.2494 32 1 3.1299 -2.8851 0.0002 33 1 1.6761 -3.9126 0.0000 34 1 1.7520 -2.3219 -3.3860 35 1 3.1267 -2.9627 -2.4544 36 1 1.7191 -4.8496 -1.6753 37 1 0.3444 -4.2087 -2.6068 38 1 4.0290 -4.7985 -4.1689 39 1 3.6201 -5.5163 -2.5520 40 1 3.9186 -6.9553 -6.0400 41 1 6.5565 -7.6552 -4.8597 42 1 1.3708 -6.7911 -2.7346 43 1 0.7481 -6.6575 -4.4344 44 1 1.6762 -0.2074 -2.1390 45 1 3.1300 -0.7214 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169630459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = -67.442674 kcal Electronic energy + Delta-G solvation = -21267.930378 eV Core-core repulsion = 18284.135259 eV Total energy + Delta-G solvation = -2983.795119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09421 -40.08954 -36.56943 -34.63158 -34.20080 -32.39351 -30.69969 -28.29074 -27.57891 -26.73700 -25.81002 -23.36579 -22.89297 -21.37663 -20.53393 -19.51345 -19.15154 -17.15329 -16.95604 -16.50302 -16.15154 -15.77647 -15.60515 -15.33969 -15.03937 -14.74495 -14.48501 -13.97003 -13.84978 -13.55588 -13.45150 -13.25978 -13.07767 -12.87222 -12.69165 -12.45290 -12.33411 -12.28574 -12.20916 -12.00487 -11.84044 -11.80191 -11.50441 -11.10196 -10.98028 -10.83271 -10.74580 -10.67639 -10.06884 -9.62606 -8.25923 -6.42376 1.41502 1.44292 1.52840 2.36981 2.94766 3.22621 3.68008 3.78482 3.82844 3.97673 4.02061 4.20125 4.23712 4.34420 4.40166 4.42351 4.51125 4.55866 4.59880 4.60924 4.68508 4.73864 4.78090 4.85877 4.90579 4.96142 5.03968 5.12465 5.15311 5.18259 5.18877 5.21006 5.32994 5.36137 5.40437 5.44354 5.49177 5.54768 5.55677 5.69989 5.70558 5.95414 6.37960 6.62141 7.29767 7.36943 8.79148 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029100 B = 0.003982 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.962732 B = 7029.334998 C = 7446.631543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.075 4.075 8 H 0.079 0.921 9 C -0.100 4.100 10 C 0.021 3.979 11 N -0.480 5.480 12 C 0.007 3.993 13 C 0.218 3.782 14 O -0.575 6.575 15 C -0.565 4.565 16 H 0.064 0.936 17 C 0.031 3.969 18 N -0.911 5.911 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.268 1.268 23 C 0.013 3.987 24 C -0.108 4.108 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.377 0.623 41 H 0.272 0.728 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 12.460 11.266 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.094 4.094 8 H 0.097 0.903 9 C -0.138 4.138 10 C -0.107 4.107 11 N -0.203 5.203 12 C -0.123 4.123 13 C 0.177 3.823 14 O -0.382 6.382 15 C -0.603 4.603 16 H 0.082 0.918 17 C -0.170 4.170 18 N -0.549 5.549 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.116 4.116 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.069 13.155 10.704 18.781 hybrid contribution 1.532 -1.510 0.631 2.242 sum -6.537 11.645 11.335 17.516 Atomic orbital electron populations 1.21925 0.94802 1.02093 1.01816 1.21083 0.96382 0.98995 0.94269 0.90776 1.21565 1.00255 0.95417 0.97822 1.21546 1.01216 0.95744 0.96906 1.21627 1.00075 0.98853 0.94894 1.21088 1.00612 0.94671 0.93049 0.90271 1.21465 0.99335 0.94444 0.98509 1.22743 1.00377 0.96019 0.91599 1.68859 1.05736 1.10828 1.34859 1.24192 0.90527 0.98732 0.98820 1.19722 0.91883 0.91614 0.79045 1.86063 1.38689 1.91254 1.22229 1.21745 0.98449 1.11777 1.28363 0.91763 1.25785 0.96602 1.00123 0.94473 1.69881 1.08880 1.35763 1.40382 0.85509 0.77188 0.79663 0.78913 1.19827 1.20644 1.19304 1.23956 0.98470 0.89308 0.99891 1.21593 1.00109 0.94626 0.98233 0.92345 0.92055 0.92764 0.92649 0.90982 0.91950 0.91122 0.93353 0.92760 0.92075 0.93966 0.94490 0.90351 0.93672 0.93083 0.77384 0.91892 0.90703 0.91075 0.91905 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.50 71.98 0.61 -1.65 16 2 C -0.09 -1.49 3.20 -10.79 -0.03 -1.52 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.88 5.45 30.60 0.17 -1.72 16 5 C -0.12 -2.14 5.65 30.59 0.17 -1.97 16 6 C -0.12 -2.71 4.96 30.59 0.15 -2.56 16 7 C -0.08 -1.75 1.92 -10.79 -0.02 -1.77 16 8 H 0.08 1.73 6.43 -2.39 -0.02 1.71 16 9 C -0.10 -3.00 4.79 30.60 0.15 -2.85 16 10 C 0.02 0.71 4.58 86.30 0.40 1.11 16 11 N -0.48 -20.63 6.41 -928.32 -5.95 -26.58 16 12 C 0.01 0.33 6.42 83.57 0.54 0.87 16 13 C 0.22 11.35 1.40 -11.20 -0.02 11.33 16 14 O -0.57 -31.69 13.56 -148.98 -2.02 -33.71 16 15 C -0.57 -30.56 8.64 25.60 0.22 -30.34 16 16 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 17 C 0.03 1.66 5.21 84.66 0.44 2.10 16 18 N -0.91 -49.58 11.82 21.45 0.25 -49.33 16 19 Si 0.96 41.61 29.55 68.60 2.03 43.64 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.01 0.56 7.12 83.57 0.60 1.16 16 24 C -0.11 -2.23 4.73 30.59 0.14 -2.09 16 25 H 0.06 0.94 4.81 -2.39 -0.01 0.93 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.05 1.35 6.57 -2.39 -0.02 1.34 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.42 7.67 -2.39 -0.02 1.40 16 36 H 0.04 1.27 5.99 -2.38 -0.01 1.25 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.05 2.49 7.66 -2.39 -0.02 2.47 16 40 H 0.38 20.97 7.10 -74.06 -0.53 20.44 16 41 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.07 3.12 7.72 -2.39 -0.02 3.10 16 43 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 44 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -57.38 337.58 -1.76 -59.14 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.42 Total: 36.74 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 3.51 Total: -29.90 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -5.70 Total: -75.91 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -2.02 Total: -33.71 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -57.38 -1.76 -59.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169630459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.302 kcal (2) G-P(sol) polarization free energy of solvation -57.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds