Wall clock time and date at job start Mon Mar 30 2020 00:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 H 1.08997 * 109.48358 * 55.00008 * 3 2 1 5 5 C 1.53097 * 109.47751 * 175.02616 * 3 2 1 6 6 C 1.53177 * 109.16232 * 177.60291 * 5 3 2 7 7 H 1.08999 * 109.54467 * 62.88270 * 6 5 3 8 8 N 1.46897 * 109.54495 * 183.05755 * 6 5 3 9 9 C 1.46893 * 111.00332 * 204.99904 * 8 6 5 10 10 H 1.09005 * 109.41428 * 325.00019 * 9 8 6 11 11 C 1.52953 * 109.41471 * 84.85995 * 9 8 6 12 12 C 1.53241 * 109.40225 * 183.77281 * 11 9 8 13 13 C 1.51268 * 108.48564 * 305.26788 * 12 11 9 14 14 C 1.37871 * 120.84833 * 231.36285 * 13 12 11 15 15 N 1.31509 * 120.00321 * 348.88297 * 14 13 12 16 16 Si 1.86809 * 119.99712 * 168.88056 * 14 13 12 17 17 H 1.48501 * 109.46880 * 354.65741 * 16 14 13 18 18 H 1.48497 * 109.47157 * 114.66391 * 16 14 13 19 19 H 1.48502 * 109.46852 * 234.66108 * 16 14 13 20 20 C 1.51272 * 118.29785 * 51.38530 * 13 12 11 21 21 C 1.52963 * 109.41622 * 205.14186 * 9 8 6 22 22 C 1.53181 * 109.03650 * 303.01804 * 6 5 3 23 23 C 1.53088 * 109.16116 * 56.97891 * 22 6 5 24 24 O 1.42900 * 109.42001 * 302.39068 * 23 22 6 25 25 H 1.08996 * 109.47062 * 299.99699 * 1 2 3 26 26 H 1.08994 * 109.47029 * 60.00371 * 1 2 3 27 27 H 1.09002 * 109.46787 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47159 * 239.99614 * 2 1 3 29 29 H 1.09003 * 109.46830 * 119.99762 * 2 1 3 30 30 H 1.08998 * 109.51735 * 297.50273 * 5 3 2 31 31 H 1.08996 * 109.52646 * 57.69048 * 5 3 2 32 32 H 1.00906 * 110.99658 * 81.04199 * 8 6 5 33 33 H 1.09005 * 109.48535 * 303.68675 * 11 9 8 34 34 H 1.09001 * 109.48149 * 63.72701 * 11 9 8 35 35 H 1.08999 * 109.62412 * 185.58489 * 12 11 9 36 36 H 1.09004 * 109.84290 * 65.08028 * 12 11 9 37 37 H 0.97007 * 119.99961 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.62641 * 188.93740 * 20 13 12 39 39 H 1.09006 * 109.78243 * 68.46335 * 20 13 12 40 40 H 1.08995 * 109.48580 * 296.27653 * 21 9 8 41 41 H 1.09010 * 109.47890 * 56.31642 * 21 9 8 42 42 H 1.09002 * 109.52301 * 176.88839 * 22 6 5 43 43 H 1.09004 * 109.51634 * 297.07680 * 22 6 5 44 44 H 1.08993 * 109.48305 * 62.38029 * 23 22 6 45 45 H 1.09004 * 109.47951 * 182.41062 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9817 0.8417 5 6 3.5658 1.4446 0.1251 6 6 4.0733 2.8885 0.0642 7 1 3.6794 3.4496 0.9116 8 7 5.5416 2.8957 0.1099 9 6 6.0456 4.1702 0.6385 10 1 5.3952 4.9811 0.3104 11 6 6.0598 4.1166 2.1670 12 6 6.4958 5.4776 2.7201 13 6 7.8251 5.8445 2.0982 14 6 8.8922 6.2249 2.8839 15 7 8.7097 6.4843 4.1601 16 14 10.5975 6.3719 2.1355 17 1 10.5615 5.9049 0.7263 18 1 11.0354 7.7902 2.1761 19 1 11.5512 5.5371 2.9093 20 6 7.9533 5.7838 0.5921 21 6 7.4628 4.4123 0.1164 22 6 3.5963 3.5311 -1.2420 23 6 2.0694 3.4483 -1.3143 24 8 1.6627 2.0816 -1.2213 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8537 0.9972 1.0764 31 1 3.9993 0.8711 -0.6942 32 1 5.9326 2.7015 -0.7998 33 1 5.0602 3.8804 2.5319 34 1 6.7586 3.3481 2.4974 35 1 6.6030 5.4154 3.8030 36 1 5.7527 6.2344 2.4688 37 1 9.4605 6.7524 4.7128 38 1 8.9969 5.9182 0.3078 39 1 7.3464 6.5674 0.1383 40 1 8.1277 3.6366 0.4963 41 1 7.4582 4.3858 -0.9734 42 1 3.9062 4.5757 -1.2685 43 1 4.0304 2.9997 -2.0890 44 1 1.6352 4.0137 -0.4899 45 1 1.7272 3.8656 -2.2614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170169353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:24 Heat of formation + Delta-G solvation = -95.162058 kcal Electronic energy + Delta-G solvation = -21378.826606 eV Core-core repulsion = 18393.829484 eV Total energy + Delta-G solvation = -2984.997122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76155 -39.03479 -36.35420 -34.86027 -34.07836 -31.71707 -31.42416 -30.72691 -28.27424 -25.33887 -24.44828 -23.70177 -23.09801 -21.89062 -21.20915 -20.81460 -18.06099 -17.39395 -17.07456 -16.63723 -16.40432 -15.76111 -15.26550 -15.19628 -14.83685 -14.80578 -14.52970 -14.47277 -14.16454 -13.91817 -13.84774 -13.10048 -12.82567 -12.73346 -12.64032 -12.58791 -12.41948 -12.12411 -12.10546 -11.93548 -11.82991 -11.74453 -11.59330 -11.23019 -11.12582 -10.80764 -10.60064 -10.43170 -10.35834 -9.23282 -8.17298 -6.09573 1.38094 1.42568 1.51005 2.41935 2.84428 3.03683 3.22916 3.77678 3.83700 3.98591 4.11859 4.17071 4.19770 4.24215 4.28824 4.42340 4.48274 4.57194 4.57785 4.77443 4.78275 4.79799 4.84918 4.93979 5.00298 5.06045 5.06621 5.13580 5.14335 5.18182 5.23176 5.23471 5.27060 5.30637 5.38358 5.47584 5.61042 5.63544 5.78984 5.89132 6.23902 6.31371 6.37170 6.60851 6.96101 7.47576 8.94144 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.003927 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.999597 B = 7129.195541 C = 7350.310588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.089 3.911 4 H 0.054 0.946 5 C -0.127 4.127 6 C 0.086 3.914 7 H 0.060 0.940 8 N -0.683 5.683 9 C 0.114 3.886 10 H 0.028 0.972 11 C -0.081 4.081 12 C 0.008 3.992 13 C -0.498 4.498 14 C 0.017 3.983 15 N -0.933 5.933 16 Si 0.935 3.065 17 H -0.233 1.233 18 H -0.284 1.284 19 H -0.289 1.289 20 C -0.025 4.025 21 C -0.102 4.102 22 C -0.177 4.177 23 C 0.066 3.934 24 O -0.389 6.389 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.344 0.656 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.017 0.983 36 H -0.008 1.008 37 H 0.262 0.738 38 H 0.043 0.957 39 H 0.017 0.983 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -10.549 -11.735 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.031 3.969 4 H 0.072 0.928 5 C -0.166 4.166 6 C -0.025 4.025 7 H 0.079 0.921 8 N -0.313 5.313 9 C 0.005 3.995 10 H 0.046 0.954 11 C -0.119 4.119 12 C -0.030 4.030 13 C -0.517 4.517 14 C -0.181 4.181 15 N -0.573 5.573 16 Si 0.762 3.238 17 H -0.157 1.157 18 H -0.210 1.210 19 H -0.216 1.216 20 C -0.063 4.063 21 C -0.140 4.140 22 C -0.217 4.217 23 C -0.011 4.011 24 O -0.308 6.308 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.715 -10.927 -11.113 20.114 hybrid contribution 1.039 1.279 -0.079 1.650 sum -11.676 -9.647 -11.193 18.833 Atomic orbital electron populations 1.21698 0.94883 1.02086 1.01785 1.21551 0.96938 0.93342 1.03239 1.22245 0.93181 0.94838 0.86614 0.92821 1.22126 0.95328 0.95959 1.03146 1.21628 0.87886 0.96542 0.96395 0.92147 1.60587 1.06124 1.33624 1.30942 1.21132 0.95031 0.88756 0.94601 0.95397 1.21412 0.97807 0.97660 0.95055 1.19335 0.94535 0.92627 0.96494 1.20654 0.96691 1.42700 0.91669 1.25693 1.02490 0.94817 0.95079 1.70048 1.32239 1.47344 1.07658 0.85843 0.80043 0.77657 0.80304 1.15716 1.21018 1.21568 1.19932 0.97850 0.94072 0.94407 1.21643 0.95559 0.98607 0.98240 1.22862 0.98093 1.01725 0.99004 1.22545 0.92902 0.82838 1.02817 1.87883 1.78704 1.25095 1.39149 0.92860 0.92962 0.91608 0.91221 0.89555 0.90794 0.91033 0.83724 0.94620 0.94403 0.96405 0.98935 0.92936 0.93833 0.96459 0.93198 0.92144 0.91428 0.90559 0.93247 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.81 71.98 0.71 -1.59 16 2 C -0.11 -1.93 5.64 30.59 0.17 -1.75 16 3 C 0.09 1.85 2.64 30.63 0.08 1.93 16 4 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.13 -2.89 5.03 30.69 0.15 -2.74 16 6 C 0.09 2.23 2.34 45.04 0.11 2.34 16 7 H 0.06 1.79 7.09 -2.39 -0.02 1.77 16 8 N -0.68 -20.36 6.06 -469.02 -2.84 -23.21 16 9 C 0.11 4.17 2.21 44.89 0.10 4.27 16 10 H 0.03 1.06 7.18 -2.38 -0.02 1.04 16 11 C -0.08 -3.51 5.43 30.66 0.17 -3.34 16 12 C 0.01 0.42 5.93 30.11 0.18 0.60 16 13 C -0.50 -26.55 5.48 -16.17 -0.09 -26.64 16 14 C 0.02 0.95 5.44 84.65 0.46 1.41 16 15 N -0.93 -56.06 12.82 21.44 0.28 -55.79 16 16 Si 0.94 42.87 27.95 68.60 1.92 44.79 16 17 H -0.23 -9.72 5.58 99.48 0.56 -9.17 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 C -0.02 -1.11 5.65 30.11 0.17 -0.94 16 21 C -0.10 -3.88 5.24 30.66 0.16 -3.72 16 22 C -0.18 -3.96 5.39 30.68 0.17 -3.80 16 23 C 0.07 1.34 6.84 72.01 0.49 1.83 16 24 O -0.39 -8.73 9.94 -148.98 -1.48 -10.21 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.34 9.15 8.01 -89.69 -0.72 8.43 16 33 H 0.04 1.44 7.38 -2.38 -0.02 1.42 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 38 H 0.04 1.91 4.36 -2.39 -0.01 1.90 16 39 H 0.02 0.75 8.14 -2.38 -0.02 0.74 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.91 8.05 -2.38 -0.02 1.89 16 42 H 0.07 1.59 7.51 -2.39 -0.02 1.57 16 43 H 0.08 1.63 8.09 -2.38 -0.02 1.61 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -60.60 336.49 0.97 -59.63 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.07 Total: 16.91 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.02 Total: -32.13 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.57 Total: -78.99 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.48 Total: -10.21 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.92 Total: 44.79 kcal Total: -60.60 0.97 -59.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170169353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.530 kcal (2) G-P(sol) polarization free energy of solvation -60.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds