Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 H 1.08999 * 109.47040 * 43.75663 * 3 2 1 5 5 C 1.50700 * 109.46813 * 163.75207 * 3 2 1 6 6 H 1.08010 * 119.99497 * 119.99807 * 5 3 2 7 7 C 1.37873 * 120.00650 * 300.00480 * 5 3 2 8 8 N 1.31511 * 120.00143 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99666 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47293 * 90.00443 * 9 7 5 11 11 H 1.48498 * 109.47189 * 210.00417 * 9 7 5 12 12 H 1.48503 * 109.47367 * 329.99963 * 9 7 5 13 13 N 1.46899 * 109.47258 * 283.75515 * 3 2 1 14 14 C 1.46897 * 111.00090 * 128.02716 * 13 3 2 15 15 C 1.52998 * 109.54150 * 49.87480 * 14 13 3 16 16 C 1.52994 * 109.47048 * 65.54301 * 15 14 13 17 17 C 1.53002 * 117.49827 * 243.61867 * 16 15 14 18 18 C 1.53001 * 117.50114 * 174.99416 * 16 15 14 19 19 C 1.53174 * 109.61841 * 170.10236 * 14 13 3 20 20 C 1.53090 * 109.16260 * 62.92597 * 19 14 13 21 21 O 1.42905 * 109.41416 * 57.61376 * 20 19 14 22 22 C 1.42904 * 114.09576 * 298.83926 * 21 20 19 23 23 C 1.53088 * 109.41713 * 61.15871 * 22 21 20 24 24 H 1.09006 * 109.46825 * 312.81190 * 1 2 3 25 25 H 1.08994 * 109.47307 * 72.81188 * 1 2 3 26 26 H 1.08998 * 109.47121 * 192.81321 * 1 2 3 27 27 H 1.08996 * 109.46879 * 239.99621 * 2 1 3 28 28 H 1.08999 * 109.47071 * 119.99901 * 2 1 3 29 29 H 0.97009 * 119.99854 * 179.97438 * 8 7 5 30 30 H 1.00897 * 110.99871 * 4.07000 * 13 3 2 31 31 H 1.09000 * 109.47663 * 305.53896 * 15 14 13 32 32 H 1.09006 * 109.46993 * 185.53860 * 15 14 13 33 33 H 1.09000 * 115.55406 * 29.32507 * 16 15 14 34 34 H 1.08995 * 117.49878 * 359.97438 * 17 16 15 35 35 H 1.09006 * 117.50100 * 145.01708 * 17 16 15 36 36 H 1.08996 * 117.50389 * 214.97336 * 18 16 15 37 37 H 1.09001 * 117.49844 * 0.02562 * 18 16 15 38 38 H 1.09002 * 109.52270 * 182.83521 * 19 14 13 39 39 H 1.09002 * 109.51929 * 303.02752 * 19 14 13 40 40 H 1.08998 * 109.48525 * 297.62661 * 20 19 14 41 41 H 1.09002 * 109.48777 * 177.59490 * 20 19 14 42 42 H 1.08998 * 109.48052 * 301.17447 * 22 21 20 43 43 H 1.09005 * 109.48797 * 181.15010 * 22 21 20 44 44 H 1.08992 * 109.52700 * 182.48579 * 23 22 21 45 45 H 1.09003 * 109.57490 * 62.32744 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4613 2.0325 0.7107 5 6 3.4935 1.4613 0.3975 6 1 4.2339 1.8581 -0.2814 7 6 3.8783 0.9720 1.6277 8 7 5.1466 0.9889 1.9748 9 14 2.5977 0.2862 2.8021 10 1 2.4272 -1.1680 2.5544 11 1 3.0444 0.5008 4.2020 12 1 1.3033 0.9807 2.5837 13 7 1.8928 2.0140 -1.3452 14 6 1.1794 3.2971 -1.2969 15 6 1.8171 4.1977 -0.2372 16 6 3.2419 4.5569 -0.6636 17 6 4.3891 4.0675 0.2226 18 6 4.0114 5.5501 0.2094 19 6 1.2579 3.9811 -2.6653 20 6 0.5482 3.1091 -3.7044 21 8 -0.8057 2.8953 -3.3001 22 6 -0.9410 2.2168 -2.0497 23 6 -0.2912 3.0528 -0.9441 24 1 -0.3633 0.6984 0.7539 25 1 -0.3633 0.3037 -0.9817 26 1 -0.3633 -1.0021 0.2279 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.4173 0.6449 2.8405 30 1 1.4298 1.3659 -1.9647 31 1 1.8451 3.6721 0.7173 32 1 1.2284 5.1092 -0.1329 33 1 3.4161 4.5920 -1.7390 34 1 4.1287 3.4900 1.1096 35 1 5.3183 3.7803 -0.2697 36 1 4.6922 6.2384 -0.2916 37 1 3.5028 5.9474 1.0878 38 1 0.7717 4.9553 -2.6140 39 1 2.3025 4.1087 -2.9492 40 1 1.0596 2.1498 -3.7842 41 1 0.5637 3.6109 -4.6718 42 1 -0.4491 1.2458 -2.1079 43 1 -1.9983 2.0758 -1.8250 44 1 -0.3543 2.5168 0.0028 45 1 -0.8084 4.0084 -0.8570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -7.194549 kcal Electronic energy + Delta-G solvation = -23196.294491 eV Core-core repulsion = 20215.111927 eV Total energy + Delta-G solvation = -2981.182564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12625 -37.15885 -35.76862 -33.80402 -31.96026 -30.85043 -29.77734 -27.88695 -26.64081 -23.64102 -22.89222 -22.74816 -21.20616 -20.22055 -19.72286 -18.09901 -16.74685 -16.18751 -15.97554 -15.45394 -14.80603 -14.70104 -14.14608 -13.95014 -13.85957 -13.32663 -13.04259 -12.56901 -12.28669 -12.24636 -11.93282 -11.78347 -11.55112 -11.29699 -11.13553 -11.00051 -10.90209 -10.63328 -10.53705 -10.38815 -10.08454 -9.87329 -9.69723 -9.46932 -9.33102 -9.05385 -8.97489 -8.80850 -8.40346 -7.29232 -5.99073 -3.90602 3.24483 3.35097 3.38366 4.04730 4.42386 4.69048 4.93730 5.11713 5.14444 5.19236 5.22880 5.28335 5.33884 5.57064 5.66495 5.69380 5.77556 5.88890 5.89473 5.92649 5.95298 5.97407 6.05530 6.11942 6.24674 6.34619 6.37641 6.40438 6.47863 6.50312 6.56095 6.60826 6.70150 6.75906 6.83852 7.09017 7.14342 7.19347 7.37649 7.62109 7.80130 8.00347 8.30657 8.79762 9.19756 9.64026 11.12570 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.009840 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.655192 B = 2844.913699 C = 3954.698002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.151 4.151 3 C 0.186 3.814 4 H 0.022 0.978 5 C -0.476 4.476 6 H 0.096 0.904 7 C 0.063 3.937 8 N -0.899 5.899 9 Si 0.869 3.131 10 H -0.283 1.283 11 H -0.300 1.300 12 H -0.269 1.269 13 N -0.656 5.656 14 C 0.125 3.875 15 C -0.073 4.073 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.223 4.223 19 C -0.139 4.139 20 C 0.058 3.942 21 O -0.389 6.389 22 C 0.054 3.946 23 C -0.190 4.190 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.260 0.740 30 H 0.318 0.682 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 4.309 -6.567 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.189 4.189 3 C 0.077 3.923 4 H 0.039 0.961 5 C -0.515 4.515 6 H 0.113 0.887 7 C -0.137 4.137 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.210 1.210 11 H -0.228 1.228 12 H -0.195 1.195 13 N -0.287 5.287 14 C 0.033 3.967 15 C -0.110 4.110 16 C -0.147 4.147 17 C -0.161 4.161 18 C -0.260 4.260 19 C -0.177 4.177 20 C -0.018 4.018 21 O -0.309 6.309 22 C -0.022 4.022 23 C -0.229 4.229 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.677 4.617 -6.522 11.796 hybrid contribution -1.364 -0.947 1.221 2.061 sum -10.041 3.670 -5.301 11.933 Atomic orbital electron populations 1.22338 0.98542 1.00628 1.01312 1.22456 0.92930 1.01622 1.01901 1.19808 0.97680 0.88532 0.86263 0.96096 1.21240 0.91243 1.38042 1.00942 0.88659 1.24921 0.94595 0.96422 0.97784 1.69869 1.14715 1.47640 1.21581 0.87168 0.82883 0.79498 0.80403 1.21003 1.22790 1.19455 1.60798 1.52100 1.03488 1.12304 1.20830 0.89253 0.92253 0.94408 1.21225 0.94016 0.97013 0.98748 1.21925 0.93037 1.03199 0.96523 1.23218 0.97612 0.91874 1.03411 1.23087 1.05429 0.94982 1.02533 1.22263 1.01749 0.98579 0.95082 1.22618 0.82389 0.99376 0.97459 1.87863 1.26515 1.78798 1.37677 1.22838 1.00745 0.94849 0.83754 1.23036 0.98946 1.01247 0.99699 0.93237 0.92410 0.93892 0.92011 0.92276 0.92977 0.86336 0.90345 0.93372 0.88897 0.85656 0.90351 0.90715 0.90424 0.91691 0.89672 0.92688 0.89553 0.92201 0.89647 0.90438 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.69 37.16 0.32 -2.50 16 2 C -0.15 -3.01 4.54 -26.73 -0.12 -3.13 16 3 C 0.19 3.87 0.54 -68.87 -0.04 3.84 16 4 H 0.02 0.47 3.58 -51.93 -0.19 0.29 16 5 C -0.48 -11.84 6.02 -34.44 -0.21 -12.05 16 6 H 0.10 2.61 6.27 -52.48 -0.33 2.28 16 7 C 0.06 1.67 4.96 -17.82 -0.09 1.58 16 8 N -0.90 -25.62 13.96 55.43 0.77 -24.85 16 9 Si 0.87 20.87 24.44 -169.99 -4.15 16.71 16 10 H -0.28 -6.77 6.78 56.52 0.38 -6.39 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.66 -11.89 5.64 -94.07 -0.53 -12.42 16 14 C 0.12 2.00 0.36 -131.42 -0.05 1.95 16 15 C -0.07 -1.27 4.10 -26.74 -0.11 -1.38 16 16 C -0.13 -2.31 5.11 -90.62 -0.46 -2.77 16 17 C -0.12 -2.58 7.15 -26.73 -0.19 -2.77 16 18 C -0.22 -3.89 10.25 -26.73 -0.27 -4.16 16 19 C -0.14 -1.97 4.70 -26.59 -0.12 -2.10 16 20 C 0.06 0.78 6.58 37.20 0.24 1.02 16 21 O -0.39 -5.68 10.77 -35.23 -0.38 -6.06 16 22 C 0.05 0.75 5.77 37.20 0.21 0.96 16 23 C -0.19 -2.82 4.47 -26.59 -0.12 -2.94 16 24 H 0.05 0.83 6.70 -51.93 -0.35 0.48 16 25 H 0.06 0.83 3.92 -51.93 -0.20 0.63 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.20 7.98 -51.93 -0.41 0.79 16 28 H 0.06 1.31 3.41 -51.93 -0.18 1.13 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.32 5.43 4.51 -39.29 -0.18 5.25 16 31 H 0.08 1.58 5.49 -51.93 -0.28 1.29 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.62 5.83 -51.93 -0.30 1.32 16 34 H 0.13 3.02 5.77 -51.93 -0.30 2.72 16 35 H 0.08 1.71 8.08 -51.93 -0.42 1.29 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.24 6.10 -51.93 -0.32 0.93 16 40 H 0.05 0.75 6.98 -51.93 -0.36 0.38 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.83 3.90 -51.93 -0.20 0.63 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.23 4.81 -51.93 -0.25 0.98 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -26.51 305.22 -7.53 -34.05 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -6.84 Total: 12.42 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -1.00 Total: -24.44 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.24 Total: -37.27 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.06 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.51 -7.53 -34.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.851 kcal (2) G-P(sol) polarization free energy of solvation -26.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds