Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47225 * 2 1 4 4 H 1.09000 * 109.46724 * 305.07911 * 3 2 1 5 5 C 1.50700 * 109.46938 * 185.08118 * 3 2 1 6 6 H 1.08002 * 119.99514 * 245.57829 * 5 3 2 7 7 C 1.37872 * 120.00417 * 65.58083 * 5 3 2 8 8 N 1.31512 * 120.00191 * 197.21623 * 7 5 3 9 9 Si 1.86799 * 120.00001 * 17.22060 * 7 5 3 10 10 H 1.48493 * 109.47355 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47228 * 59.99691 * 9 7 5 12 12 H 1.48502 * 109.47179 * 299.99996 * 9 7 5 13 13 N 1.46894 * 109.47062 * 65.07916 * 3 2 1 14 14 C 1.48899 * 111.00204 * 184.51488 * 13 3 2 15 15 C 1.54846 * 103.87686 * 200.22436 * 14 13 3 16 16 H 1.09001 * 105.61430 * 271.68481 * 15 14 13 17 17 C 1.51143 * 105.49834 * 24.52068 * 15 14 13 18 18 H 1.09002 * 107.71385 * 244.85640 * 17 15 14 19 19 C 1.48928 * 111.00243 * 69.87353 * 13 3 2 20 20 C 1.50984 * 116.76441 * 122.71944 * 17 15 14 21 21 C 1.52862 * 110.87211 * 329.55981 * 20 17 15 22 22 C 1.52959 * 107.19101 * 64.64129 * 21 20 17 23 23 C 1.49250 * 110.71501 * 156.32191 * 15 14 13 24 24 H 1.08996 * 107.89620 * 117.04872 * 23 15 14 25 25 O 1.42901 * 107.86462 * 0.94124 * 23 15 14 26 26 C 1.42897 * 113.99942 * 142.46561 * 25 23 15 27 27 H 1.09006 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47391 * 299.99760 * 1 2 3 29 29 H 1.08994 * 109.47520 * 60.00292 * 1 2 3 30 30 H 1.09006 * 109.47107 * 239.99569 * 2 1 3 31 31 H 1.09001 * 109.47122 * 120.00215 * 2 1 3 32 32 H 0.96994 * 120.00086 * 354.57592 * 8 7 5 33 33 H 1.09003 * 110.54550 * 318.82104 * 14 13 3 34 34 H 1.09008 * 110.54953 * 81.62800 * 14 13 3 35 35 H 1.09005 * 110.56167 * 278.49712 * 19 13 3 36 36 H 1.08999 * 110.55846 * 41.34051 * 19 13 3 37 37 H 1.09004 * 109.20169 * 89.91636 * 20 17 15 38 38 H 1.09002 * 109.19717 * 209.24863 * 20 17 15 39 39 H 1.09004 * 109.91707 * 184.06329 * 21 20 17 40 40 H 1.09008 * 109.91093 * 305.21901 * 21 20 17 41 41 H 1.08996 * 109.31627 * 55.08549 * 22 21 20 42 42 H 1.08997 * 109.32108 * 174.52501 * 22 21 20 43 43 H 1.09006 * 109.46970 * 60.00343 * 26 25 23 44 44 H 1.09004 * 109.47146 * 180.02562 * 26 25 23 45 45 H 1.09002 * 109.47427 * 299.99876 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9819 -0.8410 5 6 3.5417 1.4443 -0.1258 6 1 4.1514 1.8064 0.6888 7 6 4.1374 0.9839 -1.2809 8 7 5.4131 0.6646 -1.2806 9 14 3.1323 0.8136 -2.8462 10 1 3.9993 0.3028 -3.9381 11 1 2.5841 2.1395 -3.2292 12 1 2.0143 -0.1364 -2.6157 13 7 1.6530 2.0987 1.2560 14 6 2.0379 3.5371 1.2473 15 6 2.0571 3.9254 2.7461 16 1 1.0404 4.2407 2.9805 17 6 2.2965 2.6345 3.4948 18 1 1.4077 2.4270 4.0907 19 6 2.4149 1.5396 2.4071 20 6 3.5008 2.5892 4.4042 21 6 4.6172 3.4893 3.8748 22 6 4.1008 4.9281 3.9269 23 6 2.9410 5.1063 2.9742 24 1 2.3215 5.9209 3.3492 25 8 3.4697 5.5089 1.7092 26 6 3.5842 6.9245 1.5511 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9535 0.8267 -0.4916 33 1 3.0263 3.6659 0.8060 34 1 1.2972 4.1281 0.7084 35 1 1.9626 0.6089 2.7497 36 1 3.4585 1.3817 2.1349 37 1 3.2112 2.9254 5.3998 38 1 3.8661 1.5640 4.4644 39 1 5.5032 3.3899 4.5020 40 1 4.8568 3.2178 2.8466 41 1 3.7729 5.1570 4.9409 42 1 4.9043 5.6099 3.6482 43 1 4.2476 7.3233 2.3186 44 1 3.9925 7.1482 0.5654 45 1 2.5995 7.3818 1.6483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -46.977433 kcal Electronic energy + Delta-G solvation = -22719.990132 eV Core-core repulsion = 19737.082452 eV Total energy + Delta-G solvation = -2982.907679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10131 -37.43771 -35.61407 -33.21743 -31.84770 -30.74928 -29.67371 -26.55842 -26.38161 -26.16651 -23.14737 -22.07793 -21.62014 -20.78239 -19.02120 -17.96696 -17.24589 -16.46373 -15.86347 -15.35024 -14.84098 -14.30002 -13.87043 -13.83623 -13.45090 -13.15816 -12.93118 -12.69501 -12.50753 -12.27983 -12.01984 -11.63716 -11.52566 -11.44373 -10.94626 -10.88078 -10.82081 -10.77333 -10.42096 -10.35121 -10.18021 -9.90809 -9.83047 -9.67571 -9.47200 -9.41159 -9.15999 -8.85106 -8.27026 -7.22230 -6.30160 -3.99417 3.44223 3.48277 3.65112 3.99792 4.54169 4.79091 4.87887 5.04415 5.23790 5.28623 5.32902 5.39258 5.41701 5.47088 5.53219 5.70295 5.79023 5.81601 5.87340 5.90823 6.07095 6.11590 6.19090 6.19782 6.24201 6.37569 6.41196 6.46014 6.52611 6.62419 6.69508 6.77631 6.84219 6.87723 7.00387 7.06587 7.17555 7.31737 7.34154 7.48523 7.96005 8.08231 8.27150 8.46010 9.01851 9.68888 11.00672 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.007472 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.295285 B = 3746.450096 C = 4152.616310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.621 4.621 6 H 0.066 0.934 7 C 0.034 3.966 8 N -0.908 5.908 9 Si 1.042 2.958 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.507 5.507 14 C 0.054 3.946 15 C -0.084 4.084 16 H 0.058 0.942 17 C -0.078 4.078 18 H 0.060 0.940 19 C 0.038 3.962 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.133 4.133 23 C 0.111 3.889 24 H 0.045 0.955 25 O -0.372 6.372 26 C 0.029 3.971 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.082 0.918 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 8.210 9.806 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.067 3.933 4 H 0.045 0.955 5 C -0.659 4.659 6 H 0.083 0.917 7 C -0.171 4.171 8 N -0.542 5.542 9 Si 0.871 3.129 10 H -0.215 1.215 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.230 5.230 14 C -0.074 4.074 15 C -0.103 4.103 16 H 0.077 0.923 17 C -0.097 4.097 18 H 0.079 0.921 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.171 4.171 23 C 0.053 3.947 24 H 0.063 0.937 25 O -0.291 6.291 26 C -0.068 4.068 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.101 0.899 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.037 7.473 8.115 12.575 hybrid contribution 0.734 0.961 1.656 2.050 sum -5.304 8.433 9.771 13.954 Atomic orbital electron populations 1.21743 0.98033 0.99046 1.01214 1.21920 0.93278 0.99244 1.01135 1.19634 0.94935 0.90524 0.88209 0.95472 1.22539 0.91647 1.48072 1.03658 0.91661 1.25653 0.97432 0.92639 1.01403 1.70852 1.08011 1.41465 1.33857 0.84090 0.75576 0.77129 0.76115 1.21453 1.21134 1.19826 1.65993 1.50524 1.02095 1.04394 1.22978 1.01394 0.89952 0.93053 1.20530 0.97655 0.93599 0.98538 0.92349 1.20805 0.97499 0.94887 0.96510 0.92128 1.23385 0.99539 0.95638 0.90459 1.21107 0.95415 1.00103 0.97836 1.21413 0.97175 0.94172 1.02474 1.21680 0.98228 0.98433 0.98739 1.20883 0.93456 0.96223 0.84168 0.93690 1.88219 1.84958 1.20813 1.35090 1.22754 0.99499 0.82880 1.01672 0.95026 0.92427 0.94189 0.92322 0.93299 0.92445 0.90364 0.92444 0.92156 0.91195 0.92834 0.91831 0.92372 0.90624 0.91994 0.91621 0.94757 0.89928 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.80 37.16 0.36 -2.36 16 2 C -0.12 -2.64 5.09 -26.73 -0.14 -2.77 16 3 C 0.18 4.20 1.35 -68.87 -0.09 4.11 16 4 H 0.03 0.69 6.80 -51.93 -0.35 0.34 16 5 C -0.62 -16.96 6.89 -34.44 -0.24 -17.20 16 6 H 0.07 1.92 5.80 -52.49 -0.30 1.62 16 7 C 0.03 0.98 5.31 -17.82 -0.09 0.89 16 8 N -0.91 -27.79 13.69 55.43 0.76 -27.03 16 9 Si 1.04 25.60 26.30 -169.99 -4.47 21.13 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.22 5.71 56.52 0.32 -5.89 16 13 N -0.51 -10.79 4.86 -222.21 -1.08 -11.87 16 14 C 0.05 1.10 5.01 -1.74 -0.01 1.09 16 15 C -0.08 -1.39 2.75 -92.43 -0.25 -1.65 16 16 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 17 C -0.08 -1.27 2.95 -91.63 -0.27 -1.54 16 18 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 19 C 0.04 0.76 4.79 -1.76 -0.01 0.75 16 20 C -0.11 -1.54 5.28 -27.82 -0.15 -1.69 16 21 C -0.11 -1.72 5.96 -26.82 -0.16 -1.88 16 22 C -0.13 -1.79 5.53 -27.68 -0.15 -1.94 16 23 C 0.11 1.64 2.80 -29.51 -0.08 1.56 16 24 H 0.04 0.58 7.60 -51.93 -0.39 0.19 16 25 O -0.37 -6.23 7.65 -35.23 -0.27 -6.50 16 26 C 0.03 0.36 10.65 101.05 1.08 1.44 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.07 7.75 -51.93 -0.40 0.67 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.39 4.82 -51.93 -0.25 1.14 16 31 H 0.05 1.10 7.03 -51.93 -0.37 0.73 16 32 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 33 H 0.08 1.85 5.35 -51.93 -0.28 1.58 16 34 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 35 H 0.06 1.17 7.61 -51.93 -0.40 0.78 16 36 H 0.07 1.61 5.27 -51.93 -0.27 1.34 16 37 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 41 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.07 0.86 7.45 -51.93 -0.39 0.48 16 43 H 0.03 0.37 7.70 -51.93 -0.40 -0.02 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -29.46 325.56 -8.43 -37.89 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.07 Total: 2.66 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.21 Total: -21.20 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.32 Total: -38.90 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.27 Total: -6.50 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -4.47 Total: 21.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.46 -8.43 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.083 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds