Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.48659 * 2 1 4 4 C 1.53096 * 109.48510 * 239.97311 * 2 1 3 5 5 C 1.53170 * 109.16370 * 182.40812 * 4 2 1 6 6 N 1.46902 * 109.54385 * 176.85088 * 5 4 2 7 7 C 1.46899 * 111.00209 * 132.54401 * 6 5 4 8 8 C 1.50700 * 110.01803 * 63.05431 * 7 6 5 9 9 H 1.07999 * 119.99658 * 237.53541 * 8 7 6 10 10 C 1.37872 * 120.00006 * 57.53596 * 8 7 6 11 11 N 1.31517 * 120.00134 * 7.24483 * 10 8 7 12 12 Si 1.86804 * 120.00095 * 187.25047 * 10 8 7 13 13 H 1.48494 * 109.47233 * 89.99682 * 12 10 8 14 14 H 1.48498 * 109.46995 * 210.00177 * 12 10 8 15 15 H 1.48502 * 109.46853 * 329.99726 * 12 10 8 16 16 C 1.54269 * 110.02765 * 184.44547 * 7 6 5 17 17 C 1.54964 * 104.15953 * 95.75486 * 16 7 6 18 18 C 1.54890 * 102.78031 * 37.88577 * 17 16 7 19 19 C 1.53869 * 110.03052 * 301.66073 * 7 6 5 20 20 C 1.53168 * 109.11172 * 56.93453 * 5 4 2 21 21 C 1.53110 * 109.15959 * 303.15289 * 20 5 4 22 22 H 1.09001 * 109.48705 * 177.50933 * 21 20 5 23 23 C 1.53000 * 109.40275 * 297.49224 * 21 20 5 24 24 O 1.42894 * 109.48439 * 57.47204 * 21 20 5 25 25 H 1.09006 * 109.46515 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47092 * 300.02664 * 1 2 3 27 27 H 1.09000 * 109.46974 * 60.02867 * 1 2 3 28 28 H 1.09001 * 109.51788 * 62.50281 * 4 2 1 29 29 H 1.08999 * 109.51828 * 302.31345 * 4 2 1 30 30 H 1.09001 * 109.54312 * 297.02418 * 5 4 2 31 31 H 1.00899 * 110.99859 * 256.49812 * 6 5 4 32 32 H 0.97004 * 120.00056 * 175.00088 * 11 10 8 33 33 H 1.09007 * 110.48210 * 214.39924 * 16 7 6 34 34 H 1.08995 * 110.49008 * 337.04498 * 16 7 6 35 35 H 1.08997 * 110.71943 * 279.56903 * 17 16 7 36 36 H 1.08999 * 110.92206 * 156.29298 * 17 16 7 37 37 H 1.08995 * 110.48500 * 203.40660 * 18 17 16 38 38 H 1.08997 * 110.48545 * 80.76106 * 18 17 16 39 39 H 1.09001 * 110.03606 * 359.95289 * 19 7 6 40 40 H 1.09000 * 110.03367 * 121.34044 * 19 7 6 41 41 H 1.09000 * 109.52246 * 62.97123 * 20 5 4 42 42 H 1.09000 * 109.52697 * 183.15452 * 20 5 4 43 43 H 1.08999 * 109.46498 * 179.00140 * 23 21 20 44 44 H 1.09005 * 109.47218 * 298.99936 * 23 21 20 45 45 H 1.08995 * 109.47186 * 59.00123 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2496 5 6 3.5712 -0.7708 -1.2121 6 7 4.0673 -1.5278 -2.3691 7 6 5.1574 -0.8080 -3.0411 8 6 6.3314 -0.6617 -2.1076 9 1 6.7139 0.3201 -1.8707 10 6 6.9172 -1.7813 -1.5560 11 7 6.5472 -2.9797 -1.9518 12 14 8.2362 -1.5962 -0.2462 13 1 7.6012 -1.5719 1.0959 14 1 9.1785 -2.7410 -0.3274 15 1 8.9775 -0.3283 -0.4661 16 6 5.5858 -1.5669 -4.3141 17 6 4.7934 -0.8754 -5.4523 18 6 4.8209 0.6152 -5.0323 19 6 4.6709 0.5786 -3.4974 20 6 4.0196 -1.4587 0.0809 21 6 3.4307 -0.7092 1.2791 22 1 3.7100 -1.2201 2.2006 23 6 3.9761 0.7201 1.3026 24 8 2.0066 -0.6742 1.1664 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5134 -0.8903 28 1 1.7150 -0.1842 -2.1398 29 1 1.6444 -1.7374 -1.2709 30 1 3.9690 0.2436 -1.2423 31 1 4.3597 -2.4542 -2.0967 32 1 7.0088 -3.7648 -1.6177 33 1 6.6584 -1.4620 -4.4779 34 1 5.3111 -2.6191 -4.2416 35 1 3.7695 -1.2472 -5.4903 36 1 5.2896 -1.0154 -6.4126 37 1 3.9883 1.1542 -5.4843 38 1 5.7697 1.0729 -5.3121 39 1 3.6256 0.7171 -3.2210 40 1 5.2833 1.3574 -3.0430 41 1 3.6646 -2.4892 0.0872 42 1 5.1078 -1.4470 0.1413 43 1 3.5438 1.2600 2.1451 44 1 5.0608 0.6935 1.4062 45 1 3.7120 1.2250 0.3734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257087740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -68.059909 kcal Electronic energy + Delta-G solvation = -22901.753959 eV Core-core repulsion = 19917.932075 eV Total energy + Delta-G solvation = -2983.821884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.50905 -37.56291 -34.05646 -32.91771 -32.40419 -30.37027 -28.41025 -27.59974 -26.11285 -26.02786 -23.80511 -22.04536 -21.22411 -19.72148 -18.56250 -18.32938 -16.48670 -15.89280 -15.46489 -14.84519 -14.62855 -14.30721 -13.94994 -13.47320 -13.42200 -13.18974 -12.55741 -12.33325 -12.21217 -11.97663 -11.79598 -11.59805 -11.42964 -11.27856 -10.93565 -10.73201 -10.66038 -10.57554 -10.44779 -10.21839 -10.06423 -9.99661 -9.79033 -9.57698 -9.39842 -9.23169 -9.19013 -8.86458 -8.38693 -6.93579 -6.02697 -4.15832 3.18794 3.28818 3.31376 4.18323 4.32702 5.08579 5.21049 5.29269 5.45174 5.52767 5.58863 5.64404 5.77893 5.81678 5.84417 5.86715 5.95169 5.97239 6.07967 6.13273 6.23478 6.34249 6.40387 6.50051 6.51863 6.54226 6.61459 6.66568 6.74468 6.78475 6.81408 6.96043 7.00790 7.08549 7.12850 7.17345 7.47515 7.59138 7.75530 7.78022 7.81986 8.23604 8.72405 8.92186 9.16151 9.51766 10.93542 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.009540 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.934432 B = 2934.374517 C = 4152.156179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.105 3.895 6 N -0.678 5.678 7 C 0.234 3.766 8 C -0.532 4.532 9 H 0.051 0.949 10 C 0.075 3.925 11 N -0.885 5.885 12 Si 0.874 3.126 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.078 4.078 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.161 4.161 21 C 0.089 3.911 22 H 0.089 0.911 23 C -0.181 4.181 24 O -0.383 6.383 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.356 0.644 32 H 0.263 0.737 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 4.700 1.675 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.072 0.928 4 C -0.174 4.174 5 C -0.007 4.007 6 N -0.311 5.311 7 C 0.144 3.856 8 C -0.572 4.572 9 H 0.070 0.930 10 C -0.128 4.128 11 N -0.524 5.524 12 Si 0.703 3.297 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.117 4.117 17 C -0.164 4.164 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.200 4.200 21 C 0.031 3.969 22 H 0.107 0.893 23 C -0.238 4.238 24 O -0.303 6.303 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.593 4.635 1.436 9.011 hybrid contribution 1.915 -0.011 1.248 2.286 sum -5.677 4.624 2.684 7.798 Atomic orbital electron populations 1.21741 0.94046 1.02460 1.01584 1.22088 0.94027 0.95418 0.86034 0.92848 1.22319 0.97926 1.00816 0.96346 1.21189 0.91849 0.98224 0.89390 1.61079 1.37925 1.07313 1.24756 1.19040 0.87324 0.88058 0.91166 1.21847 1.15903 0.92617 1.26802 0.93028 1.24887 0.96200 0.95418 0.96273 1.69769 1.41232 0.97543 1.43870 0.86892 0.82205 0.77815 0.82833 1.20513 1.21258 1.20063 1.22137 0.97581 0.99089 0.92889 1.22567 1.00095 0.95651 0.98128 1.22257 0.99352 0.96822 0.97118 1.22316 0.99375 0.99158 0.93957 1.22785 1.02725 0.99160 0.95298 1.22156 0.80346 0.95452 0.98946 0.89287 1.22407 1.01830 0.97627 1.01981 1.87867 1.21269 1.77937 1.43186 0.92121 0.92600 0.91498 0.91708 0.91850 0.91496 0.82130 0.92702 0.93023 0.92148 0.92597 0.94035 0.93839 0.92990 0.93156 0.93439 0.92337 0.89453 0.92906 0.91609 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 37.16 0.36 -1.46 16 2 C 0.08 1.29 2.94 -26.68 -0.08 1.21 16 3 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 4 C -0.14 -2.36 5.03 -26.59 -0.13 -2.49 16 5 C 0.10 2.07 1.06 -67.54 -0.07 2.00 16 6 N -0.68 -14.94 5.88 -92.90 -0.55 -15.49 16 7 C 0.23 5.30 0.48 -131.64 -0.06 5.24 16 8 C -0.53 -13.27 6.54 -34.44 -0.23 -13.50 16 9 H 0.05 1.33 7.34 -52.49 -0.39 0.95 16 10 C 0.07 1.87 3.84 -17.82 -0.07 1.80 16 11 N -0.89 -22.73 10.63 55.43 0.59 -22.14 16 12 Si 0.87 20.13 29.12 -169.99 -4.95 15.18 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 C -0.08 -1.78 5.05 -25.03 -0.13 -1.90 16 17 C -0.13 -2.43 6.91 -24.70 -0.17 -2.60 16 18 C -0.12 -2.17 6.83 -25.07 -0.17 -2.34 16 19 C -0.11 -2.25 5.09 -25.61 -0.13 -2.38 16 20 C -0.16 -3.21 4.71 -26.59 -0.13 -3.34 16 21 C 0.09 1.55 3.91 -26.67 -0.10 1.45 16 22 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 23 C -0.18 -2.92 8.65 37.16 0.32 -2.59 16 24 O -0.38 -6.68 10.24 -35.23 -0.36 -7.04 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.09 8.04 -51.93 -0.42 0.68 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.40 4.64 -51.93 -0.24 1.16 16 31 H 0.36 8.64 6.22 -39.29 -0.24 8.40 16 32 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 33 H 0.05 1.25 7.85 -51.92 -0.41 0.85 16 34 H 0.06 1.46 7.76 -51.93 -0.40 1.06 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.00 6.84 -51.93 -0.36 0.65 16 40 H 0.05 0.99 7.37 -51.93 -0.38 0.61 16 41 H 0.06 1.22 8.11 -51.93 -0.42 0.79 16 42 H 0.09 1.96 5.64 -51.93 -0.29 1.67 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.07 4.98 -51.93 -0.26 0.81 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -24.83 326.83 -9.06 -33.89 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.93 Total: 11.58 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.79 Total: -20.91 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.04 Total: -37.63 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.36 Total: -7.04 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.95 Total: 15.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -24.83 -9.06 -33.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257087740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.165 kcal (2) G-P(sol) polarization free energy of solvation -24.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds