Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.48659 * 2 1 4 4 C 1.53096 * 109.48510 * 239.97311 * 2 1 3 5 5 C 1.53170 * 109.16370 * 182.40812 * 4 2 1 6 6 N 1.46902 * 109.54385 * 176.85088 * 5 4 2 7 7 C 1.46899 * 111.00209 * 132.54401 * 6 5 4 8 8 C 1.50700 * 110.01803 * 63.05431 * 7 6 5 9 9 H 1.07999 * 119.99658 * 237.53541 * 8 7 6 10 10 C 1.37872 * 120.00006 * 57.53596 * 8 7 6 11 11 N 1.31517 * 120.00134 * 7.24483 * 10 8 7 12 12 Si 1.86804 * 120.00095 * 187.25047 * 10 8 7 13 13 H 1.48494 * 109.47233 * 89.99682 * 12 10 8 14 14 H 1.48498 * 109.46995 * 210.00177 * 12 10 8 15 15 H 1.48502 * 109.46853 * 329.99726 * 12 10 8 16 16 C 1.54269 * 110.02765 * 184.44547 * 7 6 5 17 17 C 1.54964 * 104.15953 * 95.75486 * 16 7 6 18 18 C 1.54890 * 102.78031 * 37.88577 * 17 16 7 19 19 C 1.53869 * 110.03052 * 301.66073 * 7 6 5 20 20 C 1.53168 * 109.11172 * 56.93453 * 5 4 2 21 21 C 1.53110 * 109.15959 * 303.15289 * 20 5 4 22 22 H 1.09001 * 109.48705 * 177.50933 * 21 20 5 23 23 C 1.53000 * 109.40275 * 297.49224 * 21 20 5 24 24 O 1.42894 * 109.48439 * 57.47204 * 21 20 5 25 25 H 1.09006 * 109.46515 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47092 * 300.02664 * 1 2 3 27 27 H 1.09000 * 109.46974 * 60.02867 * 1 2 3 28 28 H 1.09001 * 109.51788 * 62.50281 * 4 2 1 29 29 H 1.08999 * 109.51828 * 302.31345 * 4 2 1 30 30 H 1.09001 * 109.54312 * 297.02418 * 5 4 2 31 31 H 1.00899 * 110.99859 * 256.49812 * 6 5 4 32 32 H 0.97004 * 120.00056 * 175.00088 * 11 10 8 33 33 H 1.09007 * 110.48210 * 214.39924 * 16 7 6 34 34 H 1.08995 * 110.49008 * 337.04498 * 16 7 6 35 35 H 1.08997 * 110.71943 * 279.56903 * 17 16 7 36 36 H 1.08999 * 110.92206 * 156.29298 * 17 16 7 37 37 H 1.08995 * 110.48500 * 203.40660 * 18 17 16 38 38 H 1.08997 * 110.48545 * 80.76106 * 18 17 16 39 39 H 1.09001 * 110.03606 * 359.95289 * 19 7 6 40 40 H 1.09000 * 110.03367 * 121.34044 * 19 7 6 41 41 H 1.09000 * 109.52246 * 62.97123 * 20 5 4 42 42 H 1.09000 * 109.52697 * 183.15452 * 20 5 4 43 43 H 1.08999 * 109.46498 * 179.00140 * 23 21 20 44 44 H 1.09005 * 109.47218 * 298.99936 * 23 21 20 45 45 H 1.08995 * 109.47186 * 59.00123 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2496 5 6 3.5712 -0.7708 -1.2121 6 7 4.0673 -1.5278 -2.3691 7 6 5.1574 -0.8080 -3.0411 8 6 6.3314 -0.6617 -2.1076 9 1 6.7139 0.3201 -1.8707 10 6 6.9172 -1.7813 -1.5560 11 7 6.5472 -2.9797 -1.9518 12 14 8.2362 -1.5962 -0.2462 13 1 7.6012 -1.5719 1.0959 14 1 9.1785 -2.7410 -0.3274 15 1 8.9775 -0.3283 -0.4661 16 6 5.5858 -1.5669 -4.3141 17 6 4.7934 -0.8754 -5.4523 18 6 4.8209 0.6152 -5.0323 19 6 4.6709 0.5786 -3.4974 20 6 4.0196 -1.4587 0.0809 21 6 3.4307 -0.7092 1.2791 22 1 3.7100 -1.2201 2.2006 23 6 3.9761 0.7201 1.3026 24 8 2.0066 -0.6742 1.1664 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5134 -0.8903 28 1 1.7150 -0.1842 -2.1398 29 1 1.6444 -1.7374 -1.2709 30 1 3.9690 0.2436 -1.2423 31 1 4.3597 -2.4542 -2.0967 32 1 7.0088 -3.7648 -1.6177 33 1 6.6584 -1.4620 -4.4779 34 1 5.3111 -2.6191 -4.2416 35 1 3.7695 -1.2472 -5.4903 36 1 5.2896 -1.0154 -6.4126 37 1 3.9883 1.1542 -5.4843 38 1 5.7697 1.0729 -5.3121 39 1 3.6256 0.7171 -3.2210 40 1 5.2833 1.3574 -3.0430 41 1 3.6646 -2.4892 0.0872 42 1 5.1078 -1.4470 0.1413 43 1 3.5438 1.2600 2.1451 44 1 5.0608 0.6935 1.4062 45 1 3.7120 1.2250 0.3734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257087740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -81.416973 kcal Electronic energy + Delta-G solvation = -22902.333165 eV Core-core repulsion = 19917.932075 eV Total energy + Delta-G solvation = -2984.401090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96861 -39.20973 -35.63412 -34.35344 -34.12074 -31.90328 -29.87509 -29.28283 -27.78334 -27.45815 -25.59410 -23.45098 -22.64811 -21.29105 -20.12807 -20.02021 -18.33458 -17.28146 -16.87073 -16.62494 -16.37963 -15.82258 -15.37824 -15.14023 -14.96760 -14.66858 -14.15643 -13.73956 -13.59321 -13.43300 -13.27511 -13.12134 -12.79980 -12.75336 -12.60170 -12.49128 -12.44930 -12.09631 -11.90587 -11.82300 -11.70547 -11.54690 -11.47248 -11.22912 -11.12350 -10.94386 -10.72696 -10.47572 -10.14985 -8.74968 -7.95908 -6.15873 1.31121 1.37817 1.42116 2.39903 2.88522 3.16936 3.76447 3.89492 4.05219 4.17586 4.20004 4.26220 4.27753 4.28534 4.37528 4.52285 4.57060 4.67340 4.72152 4.79965 4.91795 4.92641 5.00601 5.04067 5.08350 5.10821 5.13875 5.19261 5.24175 5.26829 5.30526 5.37439 5.41978 5.44473 5.49170 5.61567 5.72302 5.78292 5.83285 5.97141 6.32697 6.41395 6.83489 7.07995 7.26815 7.54624 8.95104 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.009540 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.934432 B = 2934.374517 C = 4152.156179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.061 0.939 4 C -0.127 4.127 5 C 0.107 3.893 6 N -0.677 5.677 7 C 0.226 3.774 8 C -0.539 4.539 9 H 0.037 0.963 10 C 0.047 3.953 11 N -0.900 5.900 12 Si 0.914 3.086 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.278 1.278 16 C -0.076 4.076 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.106 4.106 20 C -0.155 4.155 21 C 0.091 3.909 22 H 0.098 0.902 23 C -0.175 4.175 24 O -0.389 6.389 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.341 0.659 32 H 0.260 0.740 33 H 0.026 0.974 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 6.166 1.646 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.308 5.308 7 C 0.136 3.864 8 C -0.579 4.579 9 H 0.055 0.945 10 C -0.153 4.153 11 N -0.539 5.539 12 Si 0.742 3.258 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.115 4.115 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.194 4.194 21 C 0.033 3.967 22 H 0.116 0.884 23 C -0.232 4.232 24 O -0.309 6.309 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.087 6.119 1.408 11.045 hybrid contribution 2.401 -0.485 1.257 2.754 sum -6.685 5.635 2.666 9.140 Atomic orbital electron populations 1.21740 0.91519 1.02813 1.03239 1.22263 0.95959 0.95169 0.84429 0.92079 1.22230 0.95674 1.00689 0.97938 1.21226 0.93526 0.97127 0.88534 1.61153 1.37247 1.06659 1.25731 1.19128 0.86967 0.89464 0.90799 1.22019 1.16696 0.91830 1.27313 0.94480 1.25264 0.97472 0.95307 0.97303 1.69860 1.41782 0.97729 1.44540 0.86267 0.80620 0.77302 0.81616 1.20083 1.21541 1.20294 1.22002 0.96518 0.98096 0.94863 1.22485 0.99799 0.95699 0.97519 1.22236 1.00818 0.96474 0.95391 1.22236 0.99365 0.97222 0.95630 1.22656 1.00953 0.98747 0.97003 1.22116 0.80618 0.96046 0.97920 0.88417 1.22340 1.01333 0.96799 1.02747 1.87876 1.20801 1.78313 1.43886 0.92438 0.91341 0.89487 0.90820 0.92899 0.92422 0.83881 0.93080 0.95553 0.94545 0.92104 0.92133 0.90927 0.92622 0.92505 0.94307 0.93991 0.92255 0.90585 0.92453 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.57 71.98 0.69 -2.39 16 2 C 0.08 2.32 2.94 30.63 0.09 2.41 16 3 H 0.06 1.71 6.37 -2.39 -0.02 1.70 16 4 C -0.13 -4.24 5.03 30.68 0.15 -4.08 16 5 C 0.11 4.21 1.06 45.03 0.05 4.26 16 6 N -0.68 -30.12 5.88 -447.82 -2.64 -32.76 16 7 C 0.23 10.32 0.48 3.50 0.00 10.32 16 8 C -0.54 -27.38 6.54 25.60 0.17 -27.22 16 9 H 0.04 1.95 7.34 -2.91 -0.02 1.93 16 10 C 0.05 2.43 3.84 84.65 0.32 2.75 16 11 N -0.90 -47.50 10.63 21.45 0.23 -47.27 16 12 Si 0.91 41.90 29.12 68.60 2.00 43.90 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 C -0.08 -3.48 5.05 31.70 0.16 -3.32 16 17 C -0.12 -4.30 6.91 31.91 0.22 -4.08 16 18 C -0.11 -3.84 6.83 31.67 0.22 -3.62 16 19 C -0.11 -4.23 5.09 31.32 0.16 -4.07 16 20 C -0.15 -6.25 4.71 30.69 0.14 -6.10 16 21 C 0.09 3.09 3.91 30.63 0.12 3.21 16 22 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 23 C -0.17 -5.38 8.65 71.98 0.62 -4.75 16 24 O -0.39 -12.86 10.24 -148.98 -1.53 -14.39 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.39 4.64 -2.39 -0.01 2.38 16 31 H 0.34 17.01 6.22 -89.69 -0.56 16.45 16 32 H 0.26 13.47 8.32 -92.71 -0.77 12.70 16 33 H 0.03 1.29 7.85 -2.38 -0.02 1.27 16 34 H 0.04 1.80 7.76 -2.39 -0.02 1.78 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.16 6.84 -2.39 -0.02 2.14 16 40 H 0.04 1.58 7.37 -2.39 -0.02 1.57 16 41 H 0.04 1.79 8.11 -2.39 -0.02 1.77 16 42 H 0.06 2.72 5.64 -2.39 -0.01 2.71 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.06 1.91 4.98 -2.39 -0.01 1.90 16 Total: -1.00 -53.38 326.83 1.58 -51.80 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.40 Total: 35.40 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.12 Total: -36.69 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.41 Total: -80.03 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.53 Total: -14.39 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.00 Total: 43.90 kcal Total: -53.38 1.58 -51.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257087740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.614 kcal (2) G-P(sol) polarization free energy of solvation -53.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds