Wall clock time and date at job start Mon Mar 30 2020 00:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46873 * 2 1 4 4 H 1.08996 * 110.64405 * 51.86187 * 3 2 1 5 5 C 1.55156 * 110.87035 * 288.61305 * 3 2 1 6 6 C 1.55140 * 101.48424 * 205.90230 * 5 3 2 7 7 N 1.47420 * 104.71925 * 37.29246 * 6 5 3 8 8 C 1.34777 * 125.64543 * 155.82358 * 7 6 5 9 9 O 1.21283 * 120.00391 * 179.69711 * 8 7 6 10 10 C 1.50706 * 120.00110 * 359.68891 * 8 7 6 11 11 C 1.52998 * 109.47348 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46929 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.47016 * 108.70762 * 335.55746 * 7 6 5 23 23 H 1.09001 * 109.88223 * 241.86826 * 22 7 6 24 24 C 1.53000 * 109.88575 * 120.70556 * 22 7 6 25 25 H 1.09000 * 109.47672 * 59.99564 * 1 2 3 26 26 H 1.08996 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47207 * 299.99746 * 1 2 3 28 28 H 1.08997 * 109.46843 * 240.00471 * 2 1 3 29 29 H 1.08998 * 109.47138 * 119.99906 * 2 1 3 30 30 H 1.09001 * 111.00667 * 324.13480 * 5 3 2 31 31 H 1.09000 * 111.00893 * 87.99563 * 5 3 2 32 32 H 1.09002 * 110.49272 * 278.45791 * 6 5 3 33 33 H 1.08993 * 110.34450 * 156.06256 * 6 5 3 34 34 H 1.09004 * 109.47058 * 59.99967 * 10 8 7 35 35 H 1.09006 * 109.46863 * 300.00634 * 10 8 7 36 36 H 1.09000 * 109.46986 * 59.99910 * 11 10 8 37 37 H 1.09002 * 109.46857 * 299.99776 * 11 10 8 38 38 H 1.09000 * 109.47441 * 60.00090 * 12 11 10 39 39 H 1.09002 * 109.47087 * 299.99536 * 12 11 10 40 40 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 41 41 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 42 42 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 43 43 H 1.09002 * 109.47058 * 61.44837 * 24 22 7 44 44 H 1.08992 * 109.47617 * 181.45518 * 24 22 7 45 45 H 1.09002 * 109.46733 * 301.45235 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5742 2.0148 0.8022 5 6 1.7879 2.1179 -1.3739 6 6 2.9037 3.1956 -1.3977 7 7 4.0632 2.5484 -0.7574 8 6 5.3543 2.8860 -0.9459 9 8 6.2300 2.2855 -0.3599 10 6 5.7100 4.0097 -1.8852 11 6 7.2295 4.1858 -1.9175 12 6 7.5904 5.3269 -2.8705 13 6 9.1098 5.5035 -2.9023 14 6 9.4655 6.6271 -3.8415 15 1 8.6858 7.1616 -4.3639 16 6 10.7862 6.9728 -4.0340 17 7 11.7358 6.3217 -3.3983 18 14 11.2270 8.3651 -5.1987 19 1 12.7017 8.5374 -5.2286 20 1 10.7381 8.0426 -6.5633 21 1 10.5917 9.6228 -4.7297 22 6 3.5776 1.4780 0.1257 23 1 3.8605 1.6911 1.1565 24 6 4.1666 0.1353 -0.3116 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9119 1.4045 -2.1886 31 1 0.8009 2.5792 -1.4074 32 1 2.5979 4.0741 -0.8294 33 1 3.1423 3.4714 -2.4248 34 1 5.2441 4.9328 -1.5402 35 1 5.3505 3.7735 -2.8868 36 1 7.6950 3.2626 -2.2626 37 1 7.5892 4.4218 -0.9160 38 1 7.1249 6.2500 -2.5249 39 1 7.2306 5.0914 -3.8721 40 1 9.5758 4.5806 -3.2477 41 1 9.4693 5.7392 -1.9006 42 1 11.5068 5.5985 -2.7938 43 1 5.2531 0.1722 -0.2327 44 1 3.7823 -0.6566 0.3311 45 1 3.8840 -0.0661 -1.3449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435968607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:54 Heat of formation + Delta-G solvation = -78.131126 kcal Electronic energy + Delta-G solvation = -20399.735882 eV Core-core repulsion = 17415.477277 eV Total energy + Delta-G solvation = -2984.258605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52834 -38.20505 -35.05450 -34.41896 -32.82679 -31.53081 -30.55835 -29.15143 -26.03847 -25.40691 -23.56464 -23.15551 -22.01051 -20.28554 -19.67078 -18.93870 -17.14715 -16.59914 -16.23402 -15.74547 -15.23122 -14.78953 -14.59676 -13.99030 -13.70051 -13.64229 -13.31838 -13.02049 -12.86668 -12.62717 -12.50581 -12.24754 -12.16818 -12.05398 -11.77849 -11.55530 -11.13888 -10.94892 -10.94565 -10.90918 -10.65448 -10.61638 -10.54238 -10.07597 -9.79539 -9.71568 -9.45571 -8.76210 -8.43997 -8.25120 -6.28490 -3.96941 2.72233 2.87888 3.47189 3.49857 3.68600 4.04528 4.20778 4.34362 4.60373 4.75164 4.78509 4.85239 4.92612 4.99486 5.12408 5.17573 5.25649 5.28452 5.34355 5.36088 5.38503 5.48800 5.52757 5.55221 5.61082 5.67972 5.75649 5.82546 5.87484 5.97455 6.07157 6.10743 6.21694 6.34577 6.47512 6.74658 6.91057 7.07361 7.46157 7.52673 7.65604 8.24296 8.31035 8.54597 8.96803 9.75790 11.12251 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.051629 B = 0.002765 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.202376 B =10124.617720 C =10506.397283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.083 0.917 5 C -0.127 4.127 6 C 0.098 3.902 7 N -0.623 5.623 8 C 0.528 3.472 9 O -0.534 6.534 10 C -0.133 4.133 11 C -0.104 4.104 12 C -0.102 4.102 13 C 0.006 3.994 14 C -0.601 4.601 15 H 0.047 0.953 16 C 0.011 3.989 17 N -0.915 5.915 18 Si 1.069 2.931 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.137 3.863 23 H 0.071 0.929 24 C -0.164 4.164 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.954 -11.370 6.103 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.165 4.165 6 C -0.025 4.025 7 N -0.359 5.359 8 C 0.318 3.682 9 O -0.410 6.410 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.030 4.030 14 C -0.640 4.640 15 H 0.066 0.934 16 C -0.192 4.192 17 N -0.551 5.551 18 Si 0.898 3.102 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C 0.034 3.966 23 H 0.089 0.911 24 C -0.222 4.222 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.095 -10.813 5.775 27.034 hybrid contribution -1.459 -0.789 0.639 1.778 sum -25.554 -11.602 6.414 28.788 Atomic orbital electron populations 1.21795 0.95688 1.01669 1.01871 1.21610 0.95720 0.95255 1.02592 1.22321 0.93966 0.97216 0.98087 0.89838 1.22902 0.98402 0.97824 0.97371 1.22378 0.85725 0.95900 0.98528 1.48704 1.05645 1.35325 1.46214 1.20757 0.80189 0.84729 0.82496 1.90688 1.46890 1.54228 1.49145 1.21764 1.00332 0.96489 0.98739 1.21468 0.91301 1.00258 1.01170 1.21510 0.99696 0.95687 0.97126 1.19227 0.90494 0.96712 0.96617 1.22083 0.94651 1.18863 1.28371 0.93442 1.25868 0.92847 1.01337 0.99145 1.70766 1.35045 1.22106 1.27183 0.83546 0.76112 0.75134 0.75432 1.20804 1.21504 1.21510 1.21515 0.92896 0.87973 0.94226 0.91064 1.22205 1.02772 0.95946 1.01245 0.92594 0.92721 0.92775 0.91279 0.91520 0.90429 0.89898 0.91258 0.90293 0.89278 0.89291 0.91875 0.91872 0.93328 0.93338 0.97509 0.97502 0.92044 0.91122 0.91642 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.80 37.16 0.36 -0.38 16 2 C -0.11 -0.66 4.13 -26.73 -0.11 -0.77 16 3 C -0.10 -0.66 2.84 -88.78 -0.25 -0.91 16 4 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.13 -0.79 5.96 -24.46 -0.15 -0.93 16 6 C 0.10 0.79 6.70 -2.41 -0.02 0.77 16 7 N -0.62 -7.21 3.08 -162.88 -0.50 -7.71 16 8 C 0.53 8.00 7.63 -10.98 -0.08 7.92 16 9 O -0.53 -10.15 14.88 5.55 0.08 -10.07 16 10 C -0.13 -1.91 4.70 -27.88 -0.13 -2.04 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 12 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 13 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 14 C -0.60 -17.85 9.11 -34.44 -0.31 -18.17 16 15 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 16 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 17 N -0.91 -29.20 13.65 55.43 0.76 -28.45 16 18 Si 1.07 26.03 29.90 -169.99 -5.08 20.95 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.14 1.39 3.43 -66.96 -0.23 1.16 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 C -0.16 -1.70 7.99 37.16 0.30 -1.40 16 25 H 0.05 0.26 7.69 -51.93 -0.40 -0.14 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.07 0.43 6.83 -51.93 -0.35 0.07 16 29 H 0.07 0.39 7.32 -51.93 -0.38 0.01 16 30 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.59 7.48 -51.93 -0.39 0.20 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 41 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 42 H 0.27 8.61 7.22 -40.82 -0.29 8.32 16 43 H 0.07 0.96 6.74 -51.93 -0.35 0.61 16 44 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 45 H 0.06 0.56 7.59 -51.93 -0.39 0.17 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -34.45 351.02 -8.96 -43.40 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -8.40 Total: -4.56 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.10 Total: -18.85 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.26 Total: -36.16 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.45 -8.96 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435968607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.729 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds