Wall clock time and date at job start Mon Mar 30 2020 00:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47366 * 2 1 4 4 C 1.52998 * 109.47091 * 120.00171 * 2 1 3 5 5 H 1.08995 * 109.47224 * 275.36627 * 4 2 1 6 6 C 1.53001 * 109.47009 * 35.36737 * 4 2 1 7 7 C 1.53004 * 109.47207 * 60.00192 * 6 4 2 8 8 C 1.52999 * 109.46998 * 59.99952 * 7 6 4 9 9 H 1.08997 * 109.47348 * 60.00476 * 8 7 6 10 10 C 1.53003 * 109.46964 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47181 * 300.00065 * 8 7 6 12 12 C 1.52995 * 109.47324 * 60.00144 * 11 8 7 13 13 H 1.09000 * 109.47154 * 59.99698 * 12 11 8 14 14 C 1.53001 * 109.47324 * 179.97438 * 12 11 8 15 15 N 1.46497 * 109.46975 * 292.09962 * 14 12 11 16 16 C 1.34773 * 119.99927 * 179.97438 * 15 14 12 17 17 O 1.21696 * 119.99920 * 0.02562 * 16 15 14 18 18 C 1.46377 * 120.00213 * 180.02562 * 16 15 14 19 19 H 1.07996 * 120.00127 * 359.97438 * 18 16 15 20 20 C 1.40046 * 120.00183 * 180.02562 * 18 16 15 21 21 N 1.30675 * 120.00256 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00081 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46843 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47260 * 119.99886 * 22 20 18 25 25 H 1.48504 * 109.46728 * 239.99960 * 22 20 18 26 26 H 1.08996 * 109.46811 * 299.99961 * 1 2 3 27 27 H 1.09000 * 109.46699 * 59.99969 * 1 2 3 28 28 H 1.08996 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47333 * 239.99969 * 2 1 3 30 30 H 1.09000 * 109.46356 * 69.88506 * 3 2 1 31 31 H 1.09003 * 109.47314 * 189.88324 * 3 2 1 32 32 H 1.08993 * 109.47110 * 309.88967 * 3 2 1 33 33 H 1.09002 * 109.46891 * 179.97438 * 6 4 2 34 34 H 1.09001 * 109.47348 * 299.99736 * 6 4 2 35 35 H 1.08997 * 109.46683 * 300.00020 * 7 6 4 36 36 H 1.08993 * 109.46941 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.47695 * 180.02562 * 10 8 7 38 38 H 1.09007 * 109.46649 * 299.99947 * 10 8 7 39 39 H 1.09002 * 109.47111 * 59.99420 * 10 8 7 40 40 H 1.09005 * 109.46828 * 300.00049 * 11 8 7 41 41 H 1.09001 * 109.47348 * 180.02562 * 11 8 7 42 42 H 1.09006 * 109.46906 * 52.10101 * 14 12 11 43 43 H 1.09002 * 109.46823 * 172.10018 * 14 12 11 44 44 H 0.97003 * 120.00381 * 0.02562 * 15 14 12 45 45 H 0.96997 * 120.00365 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.0705 -0.0226 2.0852 6 6 1.1009 -1.8808 1.5877 7 6 1.0582 -2.8617 0.4142 8 6 2.4644 -3.4042 0.1515 9 1 2.8277 -3.9181 1.0414 10 6 2.4218 -4.3846 -1.0224 11 6 3.4035 -2.2447 -0.1869 12 6 3.4463 -1.2639 0.9865 13 1 3.8095 -1.7777 1.8765 14 6 4.3858 -0.1046 0.6483 15 7 5.7642 -0.5965 0.5826 16 6 6.7701 0.2537 0.2967 17 8 6.5334 1.4300 0.0936 18 6 8.1473 -0.2378 0.2306 19 1 8.3574 -1.2816 0.4112 20 6 9.1926 0.6457 -0.0659 21 7 8.9386 1.9088 -0.2841 22 14 10.9501 0.0183 -0.1511 23 1 10.9696 -1.4392 0.1324 24 1 11.4991 0.2665 -1.5084 25 1 11.7787 0.7291 0.8557 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8279 1.9027 0.9650 31 1 3.1157 1.4476 -0.1764 32 1 1.5399 2.0047 -0.7885 33 1 1.4645 -2.3950 2.4774 34 1 0.0991 -1.4943 1.7749 35 1 0.6949 -2.3478 -0.4758 36 1 0.3896 -3.6879 0.6555 37 1 3.4234 -4.7716 -1.2093 38 1 1.7526 -5.2108 -0.7816 39 1 2.0585 -3.8704 -1.9122 40 1 3.0401 -1.7309 -1.0770 41 1 4.4052 -2.6312 -0.3745 42 1 4.1055 0.3209 -0.3153 43 1 4.3098 0.6616 1.4198 44 1 5.9528 -1.5342 0.7441 45 1 9.6625 2.5207 -0.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116640862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:11 Heat of formation + Delta-G solvation = -74.611525 kcal Electronic energy + Delta-G solvation = -21731.668676 eV Core-core repulsion = 18747.562693 eV Total energy + Delta-G solvation = -2984.105984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20592 -37.06614 -35.00687 -33.81389 -32.34529 -30.96933 -30.57811 -27.03122 -26.62874 -26.12453 -24.59569 -22.33904 -21.00545 -20.46468 -19.57035 -18.11300 -17.10345 -15.77720 -15.19868 -14.99586 -14.75836 -14.53795 -14.03201 -13.83237 -13.68533 -13.06244 -12.99349 -12.71460 -12.27390 -12.21024 -11.99465 -11.84972 -11.73245 -11.66622 -11.43387 -11.17008 -11.07143 -11.02808 -10.79607 -10.68642 -10.44575 -10.38925 -10.17718 -10.11528 -9.76912 -9.75147 -9.68231 -8.81313 -7.53953 -7.37414 -6.13618 -4.58496 3.15312 3.23402 3.27873 4.14480 4.63554 4.66728 4.72515 4.75391 4.99703 5.08276 5.14719 5.19313 5.31716 5.44705 5.50335 5.58093 5.62889 5.66405 5.72885 5.77367 5.81877 5.85798 5.87611 5.95427 5.97318 6.02815 6.06012 6.11874 6.16976 6.25760 6.28225 6.37052 6.38449 6.45646 6.55639 6.59531 6.69355 6.71393 6.89885 7.47960 8.00804 8.20362 8.40050 9.07735 9.62427 10.65939 10.85713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025104 B = 0.004728 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.094658 B = 5920.734139 C = 6696.652183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.167 4.167 4 C -0.074 4.074 5 H 0.069 0.931 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.091 4.091 9 H 0.066 0.934 10 C -0.147 4.147 11 C -0.110 4.110 12 C -0.091 4.091 13 H 0.069 0.931 14 C 0.133 3.867 15 N -0.768 5.768 16 C 0.554 3.446 17 O -0.582 6.582 18 C -0.546 4.546 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.905 3.095 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.378 0.622 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 -9.657 1.248 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.224 4.224 4 C -0.093 4.093 5 H 0.087 0.913 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.109 4.109 9 H 0.084 0.916 10 C -0.204 4.204 11 C -0.147 4.147 12 C -0.110 4.110 13 H 0.088 0.912 14 C 0.009 3.991 15 N -0.423 5.423 16 C 0.358 3.642 17 O -0.465 6.465 18 C -0.583 4.583 19 H 0.085 0.915 20 C -0.131 4.131 21 N -0.398 5.398 22 Si 0.730 3.270 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.209 0.791 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.558 -8.580 1.052 17.798 hybrid contribution 0.976 -0.722 0.097 1.218 sum -14.582 -9.302 1.148 17.334 Atomic orbital electron populations 1.22087 0.96067 1.01707 1.01098 1.21224 0.94932 0.96431 0.98579 1.22315 1.03533 0.95378 1.01167 1.21171 0.94037 0.96357 0.97708 0.91255 1.21647 0.99457 0.96215 0.97921 1.21713 0.96517 0.98237 0.98954 1.21131 0.95587 0.95989 0.98238 0.91563 1.21827 1.01550 0.98741 0.98291 1.21702 0.99392 0.95377 0.98217 1.21390 0.94677 0.96413 0.98519 0.91224 1.21288 0.82930 0.94579 1.00340 1.46177 1.05559 1.11668 1.78934 1.18199 0.84649 0.84905 0.76463 1.90593 1.84473 1.17139 1.54336 1.20935 0.90293 0.95891 1.51229 0.91538 1.25696 1.00288 0.94328 0.92828 1.70036 1.32575 1.03256 1.33953 0.86359 0.82660 0.79763 0.78208 1.18825 1.20207 1.20215 0.93084 0.93416 0.91933 0.90606 0.93096 0.90029 0.93399 0.92418 0.91751 0.91344 0.92758 0.92670 0.93191 0.92864 0.91596 0.91583 0.92350 0.93682 0.79104 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 7.75 37.16 0.29 -1.27 16 2 C -0.09 -1.14 1.57 -90.62 -0.14 -1.28 16 3 C -0.17 -2.34 8.60 37.16 0.32 -2.02 16 4 C -0.07 -0.90 2.14 -90.62 -0.19 -1.10 16 5 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 6 C -0.11 -1.18 4.87 -26.73 -0.13 -1.31 16 7 C -0.12 -1.15 4.49 -26.73 -0.12 -1.27 16 8 C -0.09 -0.98 2.72 -90.62 -0.25 -1.23 16 9 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 11 C -0.11 -1.44 4.12 -26.73 -0.11 -1.55 16 12 C -0.09 -1.30 1.96 -90.62 -0.18 -1.47 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 14 C 0.13 2.55 3.41 -4.04 -0.01 2.53 16 15 N -0.77 -17.31 5.30 -61.72 -0.33 -17.64 16 16 C 0.55 15.99 7.75 -12.99 -0.10 15.89 16 17 O -0.58 -19.11 15.02 5.19 0.08 -19.03 16 18 C -0.55 -15.66 9.54 -35.63 -0.34 -16.00 16 19 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 20 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 21 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 22 Si 0.91 20.40 29.56 -169.99 -5.02 15.38 16 23 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.58 4.73 -51.93 -0.25 0.33 16 29 H 0.08 0.99 5.29 -51.93 -0.27 0.71 16 30 H 0.05 0.68 7.89 -51.93 -0.41 0.28 16 31 H 0.08 1.39 4.52 -51.93 -0.23 1.16 16 32 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.60 6.44 -51.93 -0.33 0.27 16 35 H 0.07 0.68 5.58 -51.93 -0.29 0.39 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 41 H 0.07 0.95 7.38 -51.93 -0.38 0.56 16 42 H 0.06 1.19 5.50 -51.93 -0.29 0.91 16 43 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 44 H 0.38 7.55 7.83 -40.82 -0.32 7.24 16 45 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -33.11 331.05 -8.03 -41.14 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.68 Total: 6.72 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.72 Total: -8.80 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.33 Total: -40.40 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.08 Total: -19.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.11 -8.03 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116640862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.470 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds