Wall clock time and date at job start Mon Mar 30 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 5 5 H 1.08006 * 120.00161 * 119.99863 * 4 2 1 6 6 C 1.37881 * 119.99813 * 299.99895 * 4 2 1 7 7 N 1.31507 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47338 * 89.99791 * 8 6 4 10 10 H 1.48500 * 109.46988 * 209.99939 * 8 6 4 11 11 H 1.48502 * 109.47335 * 329.99406 * 8 6 4 12 12 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 13 13 C 1.46906 * 110.99573 * 85.00442 * 12 2 1 14 14 C 1.52998 * 109.47020 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.82274 * 305.58055 * 14 13 12 16 16 C 1.54523 * 109.82865 * 184.60964 * 14 13 12 17 17 C 1.54453 * 102.17094 * 219.83566 * 16 14 13 18 18 C 1.54115 * 101.89481 * 33.24470 * 17 16 14 19 19 O 1.43312 * 109.82531 * 66.45267 * 14 13 12 20 20 C 1.51996 * 110.66033 * 151.10204 * 17 16 14 21 21 C 1.53162 * 109.58333 * 181.51885 * 20 17 16 22 22 C 1.53005 * 109.37586 * 301.46095 * 21 20 17 23 23 C 1.53006 * 109.61536 * 60.65794 * 22 21 20 24 24 C 1.52008 * 110.64307 * 275.39987 * 17 16 14 25 25 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 27 27 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 28 28 H 0.97004 * 120.00261 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00219 * 208.96081 * 12 2 1 30 30 H 1.09002 * 109.46991 * 299.99841 * 13 12 2 31 31 H 1.09000 * 109.47202 * 60.00133 * 13 12 2 32 32 H 1.09002 * 110.86390 * 338.00524 * 16 14 13 33 33 H 1.09001 * 110.86309 * 101.66315 * 16 14 13 34 34 H 1.08997 * 110.32495 * 205.65099 * 18 17 16 35 35 H 1.09003 * 110.41051 * 83.48811 * 18 17 16 36 36 H 1.09002 * 109.44716 * 301.55198 * 20 17 16 37 37 H 1.08996 * 109.45276 * 61.47495 * 20 17 16 38 38 H 1.09002 * 109.48756 * 181.49132 * 21 20 17 39 39 H 1.09001 * 109.49257 * 61.43883 * 21 20 17 40 40 H 1.08998 * 109.44467 * 300.60685 * 22 21 20 41 41 H 1.09002 * 109.44303 * 180.70258 * 22 21 20 42 42 H 1.08998 * 109.48772 * 179.37701 * 23 22 21 43 43 H 1.08994 * 109.50378 * 59.32478 * 23 22 21 44 44 H 1.09004 * 109.45015 * 298.50258 * 24 17 16 45 45 H 1.08999 * 109.45154 * 58.43181 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.6302 -0.5441 4.4120 10 1 1.3441 -0.9490 5.1123 11 1 2.4876 -2.5654 3.7123 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5963 -0.5330 -3.5741 15 1 3.5474 -1.0122 -3.3417 16 6 2.7758 0.4467 -4.7555 17 6 2.2679 -0.3887 -5.9513 18 6 1.1593 -1.2369 -5.2981 19 8 1.6384 -1.5218 -3.9724 20 6 1.6920 0.5141 -7.0300 21 6 1.1621 -0.3404 -8.1855 22 6 2.2997 -1.1952 -8.7479 23 6 2.8370 -2.1196 -7.6534 24 6 3.3764 -1.2754 -6.4948 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.7094 1.1619 3.4844 29 1 2.9172 -1.1207 -1.0286 30 1 1.0871 0.6162 -2.5525 31 1 2.7590 1.0461 -2.1182 32 1 2.1640 1.3381 -4.6170 33 1 3.8253 0.7111 -4.8846 34 1 1.0133 -2.1626 -5.8548 35 1 0.2275 -0.6734 -5.2508 36 1 0.8769 1.1048 -6.6119 37 1 2.4709 1.1811 -7.3991 38 1 0.7736 0.3093 -8.9698 39 1 0.3650 -0.9891 -7.8224 40 1 3.1012 -0.5461 -9.1005 41 1 1.9267 -1.7945 -9.5784 42 1 3.6397 -2.7353 -8.0591 43 1 2.0334 -2.7614 -7.2923 44 1 4.1975 -0.6530 -6.8508 45 1 3.7364 -1.9328 -5.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001619199057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:11 Heat of formation + Delta-G solvation = -74.159482 kcal Electronic energy + Delta-G solvation = -21267.718183 eV Core-core repulsion = 18283.631802 eV Total energy + Delta-G solvation = -2984.086382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57966 -37.24078 -35.52779 -32.65292 -32.26241 -31.04686 -30.25577 -27.75014 -25.81066 -25.24887 -24.05417 -22.94968 -21.38409 -20.68473 -19.65294 -18.64501 -16.59145 -16.39691 -15.70954 -15.31756 -14.82044 -14.43914 -14.29570 -14.02771 -13.95997 -13.39599 -12.97910 -12.92595 -12.76339 -12.46228 -12.31376 -11.83918 -11.65614 -11.40602 -11.30382 -11.26941 -11.09160 -10.94283 -10.77260 -10.68036 -10.31893 -10.23039 -10.19604 -10.12590 -10.04342 -9.74909 -9.07510 -8.74456 -8.41970 -7.10971 -5.97647 -4.03610 3.32506 3.38966 3.43762 4.01041 4.32141 4.44454 4.48207 4.62299 4.87494 4.91444 4.98431 5.08242 5.14616 5.25684 5.30450 5.33199 5.33884 5.46374 5.54452 5.66827 5.72943 5.77281 5.80708 5.85232 5.89032 5.90379 5.93947 5.98231 6.07364 6.10677 6.22879 6.25731 6.32952 6.57619 6.96542 7.22949 7.31147 7.42009 7.60035 7.84324 7.97787 8.34869 8.49013 8.77344 9.08382 9.62073 11.08784 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047423 B = 0.003496 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.284424 B = 8006.711483 C = 8206.957857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.053 3.947 14 C 0.088 3.912 15 H 0.073 0.927 16 C -0.142 4.142 17 C -0.090 4.090 18 C 0.058 3.942 19 O -0.356 6.356 20 C -0.102 4.102 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.103 4.103 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.002 0.998 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -0.935 -22.022 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 H 0.015 0.985 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.078 4.078 14 C 0.030 3.970 15 H 0.091 0.909 16 C -0.180 4.180 17 C -0.091 4.091 18 C -0.019 4.019 19 O -0.275 6.275 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.562 -1.234 -21.898 22.082 hybrid contribution 1.097 0.417 1.009 1.547 sum 3.658 -0.817 -20.889 21.223 Atomic orbital electron populations 1.21686 0.97929 0.99349 0.99073 1.19102 0.92675 0.92108 0.85757 0.98466 1.21294 1.31255 1.12421 0.90502 0.92215 1.24927 0.95090 0.95041 0.99033 1.69904 1.36780 1.22997 1.23359 0.86525 0.78402 0.80131 0.82504 1.20816 1.21230 1.19810 1.60631 1.31901 1.32888 1.05617 1.22289 1.00038 0.93842 0.91620 1.22801 0.92111 0.88515 0.93576 0.90949 1.23159 1.02213 0.98904 0.93774 1.21543 0.96350 0.95886 0.95282 1.23371 0.95660 0.98904 0.83955 1.88627 1.59649 1.48902 1.30276 1.21325 1.00374 0.97235 0.95052 1.21586 0.98077 0.98528 0.97666 1.21529 0.98207 0.98147 0.97742 1.21605 1.00692 0.97859 0.95736 1.21326 0.96834 0.97983 0.97865 0.94944 0.90277 0.97871 0.93002 0.85518 0.91591 0.95728 0.90358 0.90342 0.90203 0.92738 0.91598 0.91769 0.92056 0.91783 0.92168 0.92258 0.92012 0.91622 0.91911 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.19 37.16 0.34 -2.87 16 2 C 0.21 5.60 2.60 -68.86 -0.18 5.43 16 3 H 0.00 -0.06 7.80 -51.93 -0.40 -0.47 16 4 C -0.52 -14.67 8.59 -34.44 -0.30 -14.96 16 5 H 0.06 1.67 7.62 -52.48 -0.40 1.27 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -26.12 11.32 55.43 0.63 -25.49 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -15.50 6.28 -107.95 -0.68 -16.18 16 13 C 0.05 1.00 5.02 -3.82 -0.02 0.98 16 14 C 0.09 1.37 3.39 -25.93 -0.09 1.28 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.14 -1.70 5.51 -25.17 -0.14 -1.84 16 17 C -0.09 -0.95 0.54 -154.18 -0.08 -1.04 16 18 C 0.06 0.75 5.79 37.74 0.22 0.96 16 19 O -0.36 -6.07 11.00 -35.23 -0.39 -6.46 16 20 C -0.10 -0.91 4.67 -27.16 -0.13 -1.04 16 21 C -0.12 -0.95 5.77 -26.64 -0.15 -1.11 16 22 C -0.12 -0.89 5.89 -26.73 -0.16 -1.05 16 23 C -0.12 -1.03 5.76 -26.64 -0.15 -1.18 16 24 C -0.10 -0.99 4.67 -27.15 -0.13 -1.12 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 27 H 0.00 0.06 7.45 -51.92 -0.39 -0.33 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.33 7.27 8.22 -39.29 -0.32 6.95 16 30 H 0.07 1.31 7.44 -51.93 -0.39 0.93 16 31 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 32 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 33 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 34 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 35 H 0.05 0.71 7.94 -51.93 -0.41 0.29 16 36 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.53 7.52 -51.93 -0.39 0.14 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.59 6.46 -51.93 -0.34 0.25 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -30.16 338.02 -9.68 -39.83 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.26 Total: 2.42 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.06 Total: -15.93 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.05 Total: -41.67 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.39 Total: -6.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.16 -9.68 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001619199057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.325 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds