Wall clock time and date at job start Mon Mar 30 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00006 * 2 1 4 4 C 1.50702 * 109.46830 * 269.99742 * 3 2 1 5 5 H 1.07992 * 120.00127 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99457 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00366 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99933 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46999 * 59.99930 * 8 6 4 10 10 H 1.48501 * 109.47505 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47104 * 300.00092 * 8 6 4 12 12 C 1.34782 * 119.99724 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99222 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00377 * 0.02562 * 12 2 1 15 15 C 1.52989 * 109.47165 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 1.08994 * 109.47543 * 269.99888 * 1 2 3 24 24 H 1.08999 * 109.47109 * 30.00755 * 1 2 3 25 25 H 1.09000 * 109.46598 * 150.00047 * 1 2 3 26 26 H 1.08998 * 109.46634 * 29.99603 * 3 2 1 27 27 H 1.08995 * 109.47246 * 149.99719 * 3 2 1 28 28 H 0.97000 * 119.99585 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46957 * 59.99820 * 14 12 2 30 30 H 1.09006 * 109.46969 * 300.00343 * 14 12 2 31 31 H 1.08997 * 109.47705 * 59.99491 * 15 14 12 32 32 H 1.09006 * 109.47323 * 299.99962 * 15 14 12 33 33 H 1.09008 * 109.47149 * 59.99652 * 16 15 14 34 34 H 1.08997 * 109.47163 * 299.99722 * 16 15 14 35 35 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 36 36 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 37 37 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 40 40 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 41 41 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 42 42 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 44 44 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 45 45 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4381 3.4167 -3.4339 9 1 2.1408 3.5934 -4.1347 10 1 4.1805 4.7029 -3.4339 11 1 4.2415 2.3820 -4.1332 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4724 0.0005 15 6 2.3796 -3.6352 0.0018 16 6 1.6147 -4.9602 0.0025 17 6 2.6089 -6.1232 0.0031 18 6 3.4036 -6.1139 1.3105 19 6 4.3974 -7.2772 1.3115 20 6 3.6361 -8.5985 1.1867 21 6 2.8414 -8.6078 -0.1207 22 6 1.8481 -7.4447 -0.1219 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0302 4.4439 -0.8504 29 1 0.7591 -2.5303 -0.8897 30 1 0.7584 -2.5299 0.8903 31 1 3.0057 -3.5771 0.8921 32 1 3.0070 -3.5779 -0.8878 33 1 0.9883 -5.0186 -0.8878 34 1 0.9877 -5.0173 0.8922 35 1 3.2931 -6.0167 -0.8387 36 1 3.9456 -5.1725 1.3997 37 1 2.7194 -6.2204 2.1523 38 1 4.9633 -7.2709 2.2431 39 1 5.0816 -7.1712 0.4696 40 1 2.9519 -8.7045 2.0285 41 1 4.3442 -9.4272 1.1870 42 1 2.2995 -9.5492 -0.2098 43 1 3.5257 -8.5017 -0.9625 44 1 1.1640 -7.5511 0.7199 45 1 1.2820 -7.4512 -1.0534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069460609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:40 Heat of formation + Delta-G solvation = -84.391577 kcal Electronic energy + Delta-G solvation = -20446.296481 eV Core-core repulsion = 17461.766403 eV Total energy + Delta-G solvation = -2984.530079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.21958 -38.66058 -34.97154 -34.42105 -32.59032 -31.11491 -30.81204 -28.03659 -26.51198 -25.48177 -23.39445 -22.70843 -21.72235 -20.47793 -19.84913 -18.23525 -16.51746 -16.10310 -15.65076 -15.52566 -15.09481 -14.53695 -14.38813 -14.18685 -14.06184 -13.63487 -13.00381 -12.77771 -12.53155 -12.34320 -12.14173 -12.09169 -11.82023 -11.60607 -11.42804 -11.25643 -11.19753 -11.09399 -10.96341 -10.84767 -10.55788 -10.49343 -10.47188 -10.13310 -10.09445 -9.95092 -9.60961 -8.79093 -8.40789 -7.58005 -6.01565 -4.06377 3.33303 3.37622 3.40205 3.53970 4.04199 4.46206 4.52715 4.57323 4.62738 4.95776 5.02309 5.14498 5.20586 5.28058 5.32536 5.37316 5.39061 5.39942 5.50500 5.54422 5.60447 5.73056 5.80084 5.84092 5.87600 5.89242 5.94625 5.97920 5.99523 6.06896 6.13995 6.16399 6.23552 6.26645 6.35983 6.49017 6.60240 7.11125 7.48504 7.59897 7.95216 8.27124 8.49582 8.93783 9.17949 9.58728 11.06480 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030679 B = 0.003193 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.471334 B = 8767.876996 C = 8993.506495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.501 3.499 13 O -0.544 6.544 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -21.598 3.358 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.288 3.712 13 O -0.422 6.422 14 C -0.179 4.179 15 C -0.142 4.142 16 C -0.151 4.151 17 C -0.105 4.105 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.466 -21.390 3.408 22.339 hybrid contribution 0.029 0.495 -1.003 1.118 sum -5.437 -20.895 2.405 21.725 Atomic orbital electron populations 1.21614 0.81585 1.02479 1.00273 1.48189 1.06109 1.07988 1.71564 1.19261 0.92549 0.78276 0.97394 1.21409 1.36517 1.06197 0.92348 0.92577 1.24943 0.95384 0.96401 0.97437 1.69929 1.38416 1.14375 1.30779 0.86556 0.78345 0.77809 0.84691 1.20263 1.21165 1.20175 1.20455 0.88184 0.85273 0.77299 1.90653 1.14050 1.87354 1.50153 1.21702 0.99406 0.93632 1.03159 1.21372 0.97474 0.91739 1.03599 1.21659 0.97777 0.94016 1.01695 1.21162 0.97071 0.94013 0.98289 1.21651 0.97955 0.98551 0.97344 1.21546 0.97975 0.94668 1.01650 1.21537 0.98890 0.97440 0.97792 1.21525 0.98218 0.98122 0.97879 1.21579 0.97686 0.94284 1.01590 0.93892 0.90937 0.92444 0.95143 0.93914 0.92686 0.89783 0.89955 0.91159 0.91360 0.92129 0.92166 0.91162 0.91239 0.92199 0.92235 0.92049 0.92208 0.92452 0.92392 0.92098 0.92154 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.85 0.61 1.98 16 2 N -0.61 -13.25 2.86 -182.95 -0.52 -13.77 16 3 C 0.24 6.59 5.16 -5.19 -0.03 6.57 16 4 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.50 10.66 7.67 -10.98 -0.08 10.58 16 13 O -0.54 -14.04 15.56 5.56 0.09 -13.95 16 14 C -0.14 -2.06 4.25 -27.89 -0.12 -2.17 16 15 C -0.10 -1.44 4.26 -26.74 -0.11 -1.56 16 16 C -0.11 -1.19 4.68 -26.73 -0.13 -1.32 16 17 C -0.09 -0.86 2.19 -90.62 -0.20 -1.06 16 18 C -0.12 -1.18 4.96 -26.73 -0.13 -1.31 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.95 5.92 -26.76 -0.16 -1.11 16 22 C -0.11 -0.97 5.20 -26.76 -0.14 -1.11 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 30 H 0.08 1.04 8.11 -51.93 -0.42 0.61 16 31 H 0.07 1.05 6.52 -51.93 -0.34 0.71 16 32 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -32.94 352.46 -9.14 -42.08 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.50 Total: -3.65 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.22 Total: -6.81 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.21 Total: -40.16 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.94 -9.14 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069460609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.316 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds