Wall clock time and date at job start Mon Mar 30 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46547 * 2 1 4 4 C 1.52997 * 109.50331 * 300.07611 * 3 2 1 5 5 C 1.53113 * 109.53555 * 60.17780 * 3 2 1 6 6 C 1.53124 * 109.15921 * 177.61058 * 5 3 2 7 7 C 1.53029 * 109.27885 * 302.34662 * 6 5 3 8 8 N 1.46848 * 109.52651 * 59.18110 * 7 6 5 9 9 C 1.46900 * 111.00382 * 174.16023 * 8 7 6 10 10 C 1.52995 * 109.47106 * 210.91510 * 9 8 7 11 11 C 1.52998 * 109.47406 * 295.24911 * 10 9 8 12 12 C 1.53008 * 109.47188 * 55.24838 * 10 9 8 13 13 C 1.53000 * 109.47160 * 175.24658 * 10 9 8 14 14 C 1.50705 * 109.47038 * 179.97438 * 13 10 9 15 15 H 1.07992 * 120.00434 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99364 * 179.97438 * 14 13 10 17 17 N 1.31524 * 119.99322 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00590 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47154 * 89.99617 * 18 16 14 20 20 H 1.48499 * 109.47400 * 209.99701 * 18 16 14 21 21 H 1.48497 * 109.47027 * 329.99636 * 18 16 14 22 22 C 1.46850 * 111.19555 * 298.25688 * 8 7 6 23 23 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47592 * 299.99733 * 1 2 3 25 25 H 1.09003 * 109.47198 * 60.00668 * 1 2 3 26 26 H 1.09000 * 109.46975 * 240.00620 * 2 1 3 27 27 H 1.08997 * 109.47409 * 120.00010 * 2 1 3 28 28 H 1.09002 * 109.47449 * 299.92221 * 4 3 2 29 29 H 1.09002 * 109.47344 * 59.92409 * 4 3 2 30 30 H 1.08997 * 109.47166 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.52381 * 297.51867 * 5 3 2 32 32 H 1.08998 * 109.52683 * 57.64527 * 5 3 2 33 33 H 1.09003 * 109.50142 * 62.28635 * 6 5 3 34 34 H 1.08996 * 109.50047 * 182.36116 * 6 5 3 35 35 H 1.09003 * 109.46253 * 179.19103 * 7 6 5 36 36 H 1.09000 * 109.46873 * 299.17307 * 7 6 5 37 37 H 1.09001 * 109.46776 * 330.91655 * 9 8 7 38 38 H 1.09000 * 109.47027 * 90.91603 * 9 8 7 39 39 H 1.09001 * 109.47058 * 71.71994 * 11 10 9 40 40 H 1.08999 * 109.47408 * 191.72144 * 11 10 9 41 41 H 1.09006 * 109.47051 * 311.72119 * 11 10 9 42 42 H 1.08999 * 109.46593 * 55.67166 * 12 10 9 43 43 H 1.09001 * 109.47183 * 175.66696 * 12 10 9 44 44 H 1.08993 * 109.47055 * 295.67440 * 12 10 9 45 45 H 1.08998 * 109.47305 * 300.00528 * 13 10 9 46 46 H 1.09002 * 109.46910 * 60.00148 * 13 10 9 47 47 H 0.97005 * 119.99374 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.46086 * 301.72788 * 22 8 7 49 49 H 1.08996 * 109.46594 * 181.75606 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5287 2.1651 -1.2480 5 6 1.5339 2.1645 1.2519 6 6 2.0976 3.5880 1.2735 7 6 3.6262 3.5267 1.2366 8 7 4.0602 2.8277 0.0203 9 6 5.5220 2.8709 -0.1187 10 6 5.8933 2.8730 -1.6029 11 6 5.4598 1.5509 -2.2391 12 6 5.1842 4.0332 -2.3044 13 6 7.4074 3.0373 -1.7495 14 6 7.7733 3.0388 -3.2115 15 1 7.0030 2.9336 -3.9610 16 6 9.0914 3.1755 -3.5920 17 7 9.4107 3.1773 -4.8679 18 14 10.4238 3.3583 -2.2956 19 1 10.9318 2.0157 -1.9152 20 1 11.5386 4.1725 -2.8428 21 1 9.8603 4.0319 -1.0982 22 6 3.5703 1.4435 -0.0001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8920 1.6528 -2.1389 29 1 0.4386 2.1641 -1.2475 30 1 1.8918 3.1928 -1.2473 31 1 0.4448 2.2042 1.2343 32 1 1.8645 1.6273 2.1408 33 1 1.7343 4.1365 0.4044 34 1 1.7749 4.0934 2.1837 35 1 4.0304 4.5391 1.2374 36 1 3.9896 2.9899 2.1129 37 1 5.9052 3.7757 0.3531 38 1 5.9588 1.9965 0.3639 39 1 4.3733 1.5269 -2.3225 40 1 5.9025 1.4626 -3.2312 41 1 5.7948 0.7211 -1.6166 42 1 5.4332 4.9681 -1.8023 43 1 5.5081 4.0817 -3.3441 44 1 4.1063 3.8764 -2.2665 45 1 7.7163 3.9792 -1.2963 46 1 7.9126 2.2108 -1.2498 47 1 10.3380 3.2739 -5.1356 48 1 3.9337 0.9167 0.8822 49 1 3.9337 0.9427 -0.8973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093459082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:45 Heat of formation + Delta-G solvation = -25.189811 kcal Electronic energy + Delta-G solvation = -22453.111752 eV Core-core repulsion = 19606.981949 eV Total energy + Delta-G solvation = -2846.129803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94694 -37.10029 -34.71239 -32.51077 -31.52058 -29.95829 -27.64036 -27.12708 -26.32454 -26.02843 -24.10573 -22.89797 -22.03554 -20.57487 -18.33575 -17.63766 -16.72558 -15.80386 -15.15769 -14.90881 -14.60047 -14.28749 -14.09571 -13.64774 -13.48245 -13.35351 -12.96895 -12.54427 -12.39280 -12.16661 -12.11530 -11.98467 -11.81043 -11.59104 -11.31578 -11.21677 -10.91544 -10.76233 -10.70003 -10.66408 -10.45237 -10.40098 -10.26902 -10.12426 -9.92284 -9.72462 -9.58879 -9.07199 -8.86711 -8.45905 -7.88312 -5.96537 -3.91990 3.34254 3.41968 3.45775 4.14350 4.51437 4.67165 4.77441 4.84667 5.06856 5.20260 5.24699 5.36726 5.38181 5.49859 5.55875 5.58912 5.62800 5.65082 5.77970 5.82207 5.87532 5.88028 5.94601 6.00365 6.01993 6.06155 6.10662 6.13904 6.19987 6.26849 6.28992 6.33511 6.46259 6.55107 6.65492 6.72930 6.79361 6.88642 7.17114 7.25154 7.28828 7.38384 7.46622 7.48762 7.59240 7.90421 8.64345 9.09987 9.66963 11.16630 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.004639 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.069015 B = 6034.007179 C = 6357.067545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.056 4.056 4 C -0.134 4.134 5 C -0.109 4.109 6 C -0.117 4.117 7 C 0.055 3.945 8 N -0.525 5.525 9 C 0.063 3.937 10 C -0.041 4.041 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.006 4.006 14 C -0.504 4.504 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.875 3.125 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.050 3.950 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.006 0.994 47 H 0.261 0.739 48 H 0.022 0.978 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 -3.050 12.643 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.056 4.056 4 C -0.191 4.191 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.073 4.073 8 N -0.248 5.248 9 C -0.064 4.064 10 C -0.041 4.041 11 C -0.191 4.191 12 C -0.172 4.172 13 C -0.043 4.043 14 C -0.542 4.542 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.078 4.078 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.990 -2.781 12.133 21.062 hybrid contribution 1.357 -0.378 1.452 2.024 sum -15.633 -3.159 13.585 20.951 Atomic orbital electron populations 1.21852 0.96028 1.01119 1.01984 1.21547 0.95823 0.96096 1.01768 1.20571 0.94744 0.94470 0.95845 1.21832 0.99239 1.01792 0.96211 1.21672 0.99984 0.95817 0.97210 1.21616 0.95161 0.96973 1.01718 1.22102 0.95459 0.98737 0.90989 1.61846 1.11935 1.14769 1.36289 1.22352 0.85680 0.99863 0.98510 1.20329 0.96824 0.95616 0.91353 1.22000 0.99141 0.95981 1.01961 1.21587 0.98622 0.96297 1.00697 1.19636 0.90983 0.95735 0.97981 1.21148 0.93521 1.48791 0.90759 0.90360 1.25016 0.98605 0.95067 0.94918 1.69919 1.18159 1.51583 1.14971 0.86856 0.81876 0.78287 0.82676 1.20559 1.21607 1.19182 1.22580 0.93909 0.89643 1.01651 0.93266 0.92739 0.92308 0.91848 0.92506 0.92988 0.93613 0.91016 0.91969 0.92817 0.90820 0.92303 0.91118 0.95834 0.91967 0.95119 0.93453 0.91192 0.94745 0.94744 0.92227 0.93463 0.96885 0.97545 0.92953 0.95993 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.21 37.16 0.34 -0.96 16 2 C -0.11 -1.12 4.99 -26.73 -0.13 -1.26 16 3 C -0.06 -0.61 0.54 -154.43 -0.08 -0.69 16 4 C -0.13 -1.52 7.68 37.16 0.29 -1.24 16 5 C -0.11 -1.10 4.37 -26.61 -0.12 -1.22 16 6 C -0.12 -1.23 5.74 -26.65 -0.15 -1.38 16 7 C 0.06 0.68 5.36 -3.84 -0.02 0.66 16 8 N -0.52 -7.42 2.89 -234.67 -0.68 -8.09 16 9 C 0.06 1.06 4.24 -3.83 -0.02 1.04 16 10 C -0.04 -0.79 0.60 -154.51 -0.09 -0.88 16 11 C -0.13 -2.51 6.84 37.16 0.25 -2.26 16 12 C -0.11 -2.22 7.99 37.16 0.30 -1.92 16 13 C -0.01 -0.13 3.11 -27.88 -0.09 -0.22 16 14 C -0.50 -13.99 7.99 -34.44 -0.28 -14.26 16 15 H 0.08 2.32 6.01 -52.49 -0.32 2.00 16 16 C 0.06 1.86 5.47 -17.81 -0.10 1.76 16 17 N -0.91 -27.93 13.96 55.43 0.77 -27.16 16 18 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.05 0.66 3.62 -3.83 -0.01 0.64 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.44 6.50 -51.93 -0.34 0.10 16 25 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.46 6.43 -51.93 -0.33 0.13 16 30 H 0.07 0.91 6.01 -51.93 -0.31 0.60 16 31 H 0.06 0.57 6.58 -51.93 -0.34 0.23 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.81 6.58 -51.93 -0.34 0.47 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 1.04 7.62 -51.93 -0.40 0.64 16 38 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 39 H 0.05 0.79 6.18 -51.93 -0.32 0.47 16 40 H 0.07 1.51 6.32 -51.93 -0.33 1.18 16 41 H 0.03 0.61 7.74 -51.93 -0.40 0.21 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.30 6.49 -51.93 -0.34 0.96 16 44 H 0.05 0.83 7.60 -51.93 -0.39 0.43 16 45 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 46 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.10 1.37 4.14 -51.93 -0.22 1.16 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -28.87 345.48 -8.54 -37.41 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -9.26 Total: -2.46 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 0.09 Total: -22.18 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.10 Total: -35.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.87 -8.54 -37.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093459082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds