Wall clock time and date at job start Mon Mar 30 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 C 1.53008 * 109.46809 * 119.99603 * 2 1 3 5 5 C 1.52998 * 109.47175 * 65.00110 * 4 2 1 6 6 C 1.52996 * 109.46726 * 180.02562 * 5 4 2 7 7 H 1.08997 * 110.06198 * 53.58725 * 6 5 4 8 8 C 1.54266 * 110.03473 * 292.16346 * 6 5 4 9 9 C 1.54887 * 104.20059 * 217.10882 * 8 6 5 10 10 C 1.54887 * 102.74588 * 37.94033 * 9 8 6 11 11 C 1.53876 * 110.03119 * 174.99919 * 6 5 4 12 12 H 1.09001 * 110.03463 * 238.56639 * 11 6 5 13 13 N 1.46902 * 110.07190 * 359.97438 * 11 6 5 14 14 C 1.46896 * 111.00136 * 203.64471 * 13 11 6 15 15 C 1.52994 * 109.47390 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47299 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47295 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00213 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00184 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47271 * 60.00163 * 21 19 17 23 23 H 1.48499 * 109.47114 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47067 * 300.00308 * 21 19 17 25 25 H 1.08996 * 109.46649 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47407 * 300.00379 * 1 2 3 27 27 H 1.08999 * 109.46539 * 60.01053 * 1 2 3 28 28 H 1.08998 * 109.47762 * 239.99343 * 2 1 3 29 29 H 1.09006 * 109.46763 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46634 * 299.99384 * 3 2 1 31 31 H 1.08992 * 109.47319 * 59.99567 * 3 2 1 32 32 H 1.08999 * 109.46944 * 304.99876 * 4 2 1 33 33 H 1.09000 * 109.47123 * 185.00264 * 4 2 1 34 34 H 1.08995 * 109.46960 * 60.00280 * 5 4 2 35 35 H 1.08994 * 109.46839 * 299.99907 * 5 4 2 36 36 H 1.08997 * 110.48797 * 335.78980 * 8 6 5 37 37 H 1.08998 * 110.48595 * 98.29545 * 8 6 5 38 38 H 1.09003 * 110.75447 * 279.63123 * 9 8 6 39 39 H 1.08997 * 110.76217 * 156.25802 * 9 8 6 40 40 H 1.09001 * 110.48816 * 203.37854 * 10 9 8 41 41 H 1.09004 * 110.48531 * 80.74069 * 10 9 8 42 42 H 1.00907 * 111.00001 * 79.69212 * 13 11 6 43 43 H 1.09011 * 109.47040 * 300.00092 * 14 13 11 44 44 H 1.09002 * 109.47564 * 59.99615 * 14 13 11 45 45 H 1.08999 * 109.47604 * 300.00096 * 15 14 13 46 46 H 1.09010 * 109.47065 * 60.00030 * 15 14 13 47 47 H 1.08998 * 109.47429 * 300.00007 * 16 15 14 48 48 H 1.09002 * 109.46530 * 60.00552 * 16 15 14 49 49 H 0.96999 * 119.99541 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1882 6 6 2.1446 -2.9163 2.4378 7 1 1.8069 -2.3954 3.3337 8 6 3.6855 -2.9863 2.4163 9 6 4.0112 -4.3755 3.0189 10 6 2.8900 -5.2718 2.4370 11 6 1.6388 -4.3695 2.4510 12 1 1.0557 -4.5538 3.3533 13 7 0.8182 -4.6285 1.2603 14 6 -0.1082 -5.7447 1.4921 15 6 -0.9442 -5.9835 0.2332 16 6 -1.9086 -7.1465 0.4744 17 6 -2.7325 -7.3813 -0.7655 18 1 -2.5828 -6.7632 -1.6384 19 6 -3.6765 -8.3860 -0.7859 20 7 -3.8584 -9.1391 0.2769 21 14 -4.6972 -8.6775 -2.3230 22 1 -3.7989 -9.0064 -3.4587 23 1 -5.6334 -9.8062 -2.0888 24 1 -5.4713 -7.4513 -2.6431 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8935 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2954 34 1 2.0699 -2.6550 0.3006 35 1 0.5490 -2.2723 1.1422 36 1 4.0563 -2.9176 1.3937 37 1 4.1120 -2.1927 3.0298 38 1 3.9570 -4.3468 4.1072 39 1 4.9913 -4.7197 2.6888 40 1 2.7359 -6.1476 3.0674 41 1 3.1323 -5.5723 1.4176 42 1 1.3976 -4.8013 0.4524 43 1 0.4594 -6.6450 1.7280 44 1 -0.7679 -5.5025 2.3253 45 1 -1.5117 -5.0833 -0.0024 46 1 -0.2847 -6.2258 -0.6003 47 1 -1.3408 -8.0467 0.7096 48 1 -2.5681 -6.9046 1.3079 49 1 -4.5228 -9.8456 0.2626 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178642510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:15 Heat of formation + Delta-G solvation = -56.196996 kcal Electronic energy + Delta-G solvation = -20830.264028 eV Core-core repulsion = 17982.789653 eV Total energy + Delta-G solvation = -2847.474375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.30435 -36.65744 -35.16266 -33.08284 -31.68930 -30.91691 -27.48369 -27.31710 -27.00479 -25.18896 -22.89808 -22.33585 -20.88501 -20.22828 -19.84710 -18.85208 -16.39754 -15.84159 -15.47421 -15.29950 -14.70242 -14.41163 -14.26873 -14.00194 -13.76975 -13.41120 -12.95333 -12.81052 -12.46142 -12.30135 -12.19762 -11.91753 -11.61317 -11.43387 -11.31833 -11.12931 -11.08641 -10.98264 -10.79500 -10.75342 -10.64658 -10.56283 -10.51700 -10.34197 -10.15339 -10.04352 -9.64884 -9.28086 -9.01970 -8.30975 -7.99808 -5.96367 -3.98362 3.35846 3.39802 3.42671 4.39514 4.50305 4.56945 4.62426 4.76390 4.86308 4.94536 4.99957 5.28316 5.39277 5.42135 5.43767 5.48057 5.52715 5.55316 5.58898 5.64282 5.73382 5.78018 5.80426 5.82554 5.85018 5.89350 5.95843 5.99916 6.01896 6.11191 6.16890 6.21023 6.24288 6.31074 6.32802 6.38902 6.54419 6.71617 6.78372 6.86271 7.18820 7.47081 7.71318 7.73613 7.88389 8.04459 8.47846 9.08817 9.65402 11.15101 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.003667 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.495861 B = 7634.356829 C = 9067.500935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.117 4.117 5 C -0.095 4.095 6 C -0.082 4.082 7 H 0.067 0.933 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.085 3.915 12 H 0.075 0.925 13 N -0.679 5.679 14 C 0.058 3.942 15 C -0.106 4.106 16 C 0.023 3.977 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.337 0.663 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.013 0.987 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.747 16.519 4.367 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.133 4.133 6 C -0.101 4.101 7 H 0.085 0.915 8 C -0.157 4.157 9 C -0.161 4.161 10 C -0.193 4.193 11 C -0.026 4.026 12 H 0.094 0.906 13 N -0.309 5.309 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.155 0.845 43 H 0.040 0.960 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.144 16.849 4.586 23.114 hybrid contribution 0.028 -1.104 -0.765 1.343 sum 15.172 15.745 3.821 22.197 Atomic orbital electron populations 1.21893 0.95126 1.02606 1.01093 1.21109 0.96121 0.95565 0.98710 1.21855 1.00563 0.96601 1.01418 1.21739 1.00085 0.96403 0.97208 1.21457 1.02771 0.92500 0.96563 1.21801 0.94145 0.95215 0.98980 0.91457 1.22471 0.95972 0.96567 1.00715 1.22420 0.98088 0.95594 0.99999 1.23131 0.96380 0.98619 1.01138 1.22232 0.92206 0.93881 0.94236 0.90628 1.60759 1.21498 1.43817 1.04795 1.22139 0.94340 0.90417 1.00134 1.21607 0.97691 1.00514 0.94590 1.19054 0.93368 0.92107 0.96973 1.21234 1.19261 1.15850 0.99357 0.92751 1.25030 0.97274 0.96055 0.96168 1.69960 1.34653 1.20500 1.28564 0.86661 0.80123 0.77706 0.83534 1.20277 1.21331 1.20215 0.91555 0.93085 0.93272 0.91446 0.93086 0.93029 0.92967 0.92589 0.92702 0.92440 0.89891 0.91687 0.92182 0.91751 0.92040 0.91914 0.91603 0.84480 0.95953 0.91710 0.92646 0.93821 0.96908 0.96663 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.95 37.16 0.33 -1.17 16 2 C -0.10 -0.90 2.92 -90.61 -0.26 -1.17 16 3 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 4 C -0.12 -1.10 4.54 -26.73 -0.12 -1.22 16 5 C -0.10 -1.02 3.33 -26.73 -0.09 -1.11 16 6 C -0.08 -0.86 2.93 -89.50 -0.26 -1.13 16 7 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.12 -1.10 5.53 -25.07 -0.14 -1.24 16 9 C -0.12 -1.16 6.91 -24.74 -0.17 -1.33 16 10 C -0.15 -1.71 6.39 -25.07 -0.16 -1.87 16 11 C 0.09 1.04 3.20 -66.59 -0.21 0.82 16 12 H 0.08 0.99 7.83 -51.93 -0.41 0.58 16 13 N -0.68 -9.60 4.36 -105.54 -0.46 -10.06 16 14 C 0.06 1.01 5.51 -3.83 -0.02 0.99 16 15 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.49 7.51 -51.93 -0.39 0.10 16 34 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 35 H 0.08 1.05 6.00 -51.93 -0.31 0.74 16 36 H 0.06 0.61 7.76 -51.93 -0.40 0.20 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.76 7.58 -51.93 -0.39 0.36 16 42 H 0.34 4.61 7.78 -39.29 -0.31 4.31 16 43 H 0.02 0.39 8.10 -51.92 -0.42 -0.03 16 44 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -29.18 373.98 -10.66 -39.84 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -10.09 Total: -0.72 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -1.46 Total: -24.98 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.28 Total: -36.75 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.18 -10.66 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178642510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.355 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds