Wall clock time and date at job start Mon Mar 30 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.52999 * 109.47124 * 239.99762 * 2 1 3 5 5 C 1.50697 * 109.46933 * 60.00390 * 4 2 1 6 6 H 1.07999 * 120.00304 * 359.97438 * 5 4 2 7 7 C 1.37887 * 119.99934 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47092 * 120.00116 * 9 7 5 12 12 H 1.48499 * 109.47404 * 240.00250 * 9 7 5 13 13 C 1.52999 * 109.47103 * 119.99666 * 2 1 3 14 14 N 1.46897 * 109.47503 * 300.00525 * 13 2 1 15 15 C 1.46901 * 111.00106 * 179.97438 * 14 13 2 16 16 H 1.08992 * 109.47407 * 34.99725 * 15 14 13 17 17 C 1.53000 * 109.46769 * 274.99427 * 15 14 13 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 15 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.52997 * 109.47232 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47127 * 59.99878 * 21 20 19 24 24 H 1.08992 * 109.47428 * 299.99764 * 1 2 3 25 25 H 1.09002 * 109.47016 * 60.00127 * 1 2 3 26 26 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46941 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47066 * 299.99842 * 3 2 1 29 29 H 1.09000 * 109.47001 * 60.00111 * 3 2 1 30 30 H 1.09006 * 109.46944 * 179.97438 * 4 2 1 31 31 H 1.08989 * 109.47450 * 299.99986 * 4 2 1 32 32 H 0.96996 * 119.99854 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47396 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.46846 * 60.00350 * 13 2 1 35 35 H 1.00904 * 110.99568 * 303.95103 * 14 13 2 36 36 H 1.09002 * 109.47398 * 300.00295 * 17 15 14 37 37 H 1.09001 * 109.47194 * 60.00475 * 17 15 14 38 38 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 40 40 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 42 42 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 43 43 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 45 45 H 1.09001 * 109.46922 * 300.00149 * 22 21 20 46 46 H 1.09002 * 109.47045 * 59.99942 * 22 21 20 47 47 H 1.09001 * 109.46801 * 300.00272 * 23 21 20 48 48 H 1.08998 * 109.46505 * 59.99871 * 23 21 20 49 49 H 1.09000 * 109.47050 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2481 0.3985 -5.2572 10 1 0.4227 1.5650 -4.8531 11 1 2.4028 0.8660 -6.0654 12 1 0.4238 -0.5354 -6.0656 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0208 -0.6952 3.6703 16 1 3.0226 -1.0916 3.5052 17 6 1.0708 -1.8412 4.0242 18 6 1.5605 -2.5349 5.2969 19 6 1.5938 -1.5264 6.4470 20 6 2.5437 -0.3804 6.0931 21 6 2.0540 0.3134 4.8204 22 6 3.0035 1.4598 4.4668 23 6 0.6475 0.8697 5.0516 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8622 -1.8820 -4.7336 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 1.8197 0.9436 2.4402 36 1 0.0689 -1.4448 4.1894 37 1 1.0468 -2.5595 3.2048 38 1 0.8841 -3.3516 5.5489 39 1 2.5624 -2.9312 5.1322 40 1 1.9430 -2.0206 7.3536 41 1 0.5918 -1.1301 6.6118 42 1 3.5456 -0.7767 5.9283 43 1 2.5670 0.3383 6.9123 44 1 2.6549 1.9537 3.5599 45 1 3.0267 2.1781 5.2863 46 1 4.0057 1.0639 4.3023 47 1 -0.0292 0.0532 5.3038 48 1 0.6712 1.5881 5.8710 49 1 0.2985 1.3635 4.1448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229699075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:55 Heat of formation + Delta-G solvation = -43.835000 kcal Electronic energy + Delta-G solvation = -22080.191454 eV Core-core repulsion = 19233.253136 eV Total energy + Delta-G solvation = -2846.938319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97433 -37.15311 -33.89397 -33.13704 -32.05469 -29.18652 -27.30614 -26.93755 -26.29223 -26.06867 -24.98751 -22.74051 -21.31459 -21.06346 -18.49329 -17.63756 -16.23455 -15.82160 -15.20924 -14.75288 -14.74358 -14.42728 -14.05729 -13.59361 -13.29780 -13.03967 -12.98439 -12.48655 -12.29140 -12.13748 -11.97640 -11.91319 -11.84028 -11.50602 -11.47084 -11.16269 -10.97744 -10.90656 -10.79322 -10.72322 -10.46931 -10.34789 -10.19492 -10.14411 -9.94168 -9.92406 -9.62987 -8.95912 -8.76614 -8.29350 -7.94964 -5.93735 -3.93550 3.33941 3.41759 3.45356 4.39592 4.52164 4.59101 4.63933 4.84172 5.02683 5.21702 5.27251 5.37131 5.40961 5.42232 5.51675 5.59497 5.65253 5.72423 5.73276 5.80956 5.85128 5.91808 5.98432 6.00083 6.04554 6.05568 6.08563 6.12233 6.27415 6.31960 6.39448 6.40078 6.41260 6.56356 6.60926 6.71565 6.84714 6.87250 7.25448 7.30532 7.31786 7.52933 7.73699 7.82049 7.90756 8.07106 8.51892 9.12235 9.69137 11.18019 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.004001 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.240168 B = 6997.373819 C = 7260.779137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.682 5.682 15 C 0.099 3.901 16 H 0.037 0.963 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.065 4.065 22 C -0.148 4.148 23 C -0.137 4.137 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.258 0.742 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.338 0.662 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 2.603 20.313 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.316 5.316 15 C -0.011 4.011 16 H 0.055 0.945 17 C -0.146 4.146 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.144 4.144 21 C -0.065 4.065 22 C -0.205 4.205 23 C -0.194 4.194 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.729 2.187 20.170 20.362 hybrid contribution 0.806 0.551 -1.032 1.421 sum -0.923 2.738 19.138 19.355 Atomic orbital electron populations 1.21584 0.95050 1.00502 1.00068 1.20614 0.95810 0.94888 0.94495 1.21767 0.99623 0.96884 1.00292 1.19124 0.95839 0.95194 0.90254 1.21289 1.30548 1.11877 0.90623 0.92256 1.25020 0.95443 0.95127 0.99043 1.69980 1.37429 1.23263 1.23122 0.86617 0.78589 0.79748 0.83541 1.19777 1.21224 1.21167 1.22125 0.96023 0.98149 0.89490 1.60644 1.63775 1.06347 1.00873 1.21454 0.96235 0.93882 0.89557 0.94492 1.21557 0.99748 0.96862 0.96472 1.21541 1.01195 0.97735 0.95288 1.21576 1.00087 0.96343 0.97753 1.21571 0.98879 0.97246 0.96705 1.20658 0.96135 0.94913 0.94840 1.21944 0.99027 0.98027 1.01533 1.21875 0.95547 1.00509 1.01465 0.93885 0.92839 0.94247 0.94189 0.91771 0.94941 0.97000 0.96726 0.93264 0.96182 0.91737 0.83972 0.91088 0.92059 0.92197 0.92394 0.92530 0.91644 0.92262 0.92158 0.92249 0.92542 0.92879 0.92119 0.93705 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.25 4.44 -3.83 -0.02 1.23 16 14 N -0.68 -9.90 4.80 -106.73 -0.51 -10.41 16 15 C 0.10 1.24 1.67 -67.71 -0.11 1.13 16 16 H 0.04 0.51 7.80 -51.93 -0.41 0.11 16 17 C -0.11 -1.31 5.15 -26.73 -0.14 -1.45 16 18 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 19 C -0.12 -1.07 5.65 -26.73 -0.15 -1.23 16 20 C -0.11 -0.99 4.73 -26.73 -0.13 -1.11 16 21 C -0.07 -0.68 0.54 -154.51 -0.08 -0.76 16 22 C -0.15 -1.52 8.24 37.16 0.31 -1.21 16 23 C -0.14 -1.41 7.62 37.16 0.28 -1.13 16 24 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 25 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 29 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.40 8.14 -51.94 -0.42 -0.02 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 34 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 35 H 0.34 4.78 4.05 -39.29 -0.16 4.62 16 36 H 0.07 0.88 6.43 -51.93 -0.33 0.54 16 37 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -28.57 351.86 -8.98 -37.55 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -9.31 Total: 0.40 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.17 Total: -23.23 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.22 Total: -36.76 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.57 -8.98 -37.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229699075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.284 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds