Wall clock time and date at job start Mon Mar 30 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47060 * 2 1 4 4 C 1.46506 * 120.00270 * 87.42941 * 3 2 1 5 5 C 1.50699 * 109.47096 * 88.11046 * 4 3 2 6 6 H 1.08001 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00054 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46868 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47154 * 299.99795 * 9 7 5 12 12 H 1.48502 * 109.47185 * 60.00061 * 9 7 5 13 13 C 1.34779 * 120.00292 * 267.42727 * 3 2 1 14 14 O 1.21291 * 119.99339 * 4.92061 * 13 3 2 15 15 C 1.50692 * 120.00729 * 184.92347 * 13 3 2 16 16 H 1.09003 * 109.46742 * 326.63796 * 15 13 3 17 17 C 1.53002 * 109.47170 * 86.63442 * 15 13 3 18 18 C 1.53001 * 109.46882 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47153 * 299.99895 * 18 17 15 20 20 C 1.53002 * 109.47140 * 60.00263 * 19 18 17 21 21 C 1.53000 * 109.47140 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.46887 * 59.99779 * 20 19 18 23 23 C 1.53000 * 109.47370 * 206.63646 * 15 13 3 24 24 H 1.09001 * 109.47390 * 175.85949 * 1 2 3 25 25 H 1.09011 * 109.47101 * 295.85439 * 1 2 3 26 26 H 1.08998 * 109.47638 * 55.85707 * 1 2 3 27 27 H 1.09002 * 109.47116 * 240.00146 * 2 1 3 28 28 H 1.08998 * 109.47418 * 120.00009 * 2 1 3 29 29 H 1.09003 * 109.46813 * 328.11102 * 4 3 2 30 30 H 1.08997 * 109.47092 * 208.10889 * 4 3 2 31 31 H 0.97006 * 119.99483 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47077 * 300.00375 * 17 15 13 33 33 H 1.09003 * 109.46999 * 60.00511 * 17 15 13 34 34 H 1.09001 * 109.46810 * 179.97438 * 18 17 15 35 35 H 1.09003 * 109.47246 * 60.00221 * 18 17 15 36 36 H 1.08998 * 109.46887 * 300.00134 * 19 18 17 37 37 H 1.08998 * 109.47078 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46860 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47078 * 299.99999 * 21 20 19 40 40 H 1.08998 * 109.46887 * 59.99871 * 21 20 19 41 41 H 1.08997 * 109.47417 * 299.99982 * 22 20 19 42 42 H 1.08998 * 109.47082 * 60.00153 * 22 20 19 43 43 H 1.09001 * 109.46798 * 179.97438 * 22 20 19 44 44 H 1.08989 * 109.47107 * 299.99852 * 23 15 13 45 45 H 1.08997 * 109.46860 * 59.99953 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2088 2.0908 1.2675 5 6 3.5971 1.8234 1.7891 6 1 4.2700 1.1880 1.2325 7 6 4.0078 2.3890 2.9776 8 7 3.1881 3.1623 3.6556 9 14 5.7284 2.0570 3.6246 10 1 5.9215 2.7764 4.9092 11 1 5.9024 0.5984 3.8425 12 1 6.7293 2.5327 2.6361 13 6 2.2923 1.9991 -1.1660 14 8 2.0507 1.4448 -2.2174 15 6 2.8988 3.3786 -1.1635 16 1 2.5256 3.9380 -0.3056 17 6 4.4221 3.2658 -1.0753 18 6 5.0378 4.6665 -1.0721 19 6 4.6541 5.3952 -2.3616 20 6 3.1308 5.5080 -2.4498 21 6 2.7471 6.2361 -3.7396 22 6 2.6069 6.2926 -1.2453 23 6 2.5151 4.1068 -2.4532 24 1 -0.3634 -1.0250 -0.0742 25 1 -0.3634 0.4482 0.9249 26 1 -0.3634 0.5768 -0.8505 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.4743 1.7417 1.9933 30 1 2.0808 3.1613 1.1073 31 1 3.4772 3.5606 4.4916 32 1 4.6954 2.7471 -0.1565 33 1 4.7953 2.7065 -1.9332 34 1 6.1230 4.5862 -1.0088 35 1 4.6645 5.2255 -0.2140 36 1 5.0274 4.8362 -3.2196 37 1 5.0931 6.3929 -2.3595 38 1 1.6619 6.3168 -3.8021 39 1 3.1858 7.2339 -3.7378 40 1 3.1203 5.6766 -4.5974 41 1 2.8802 5.7735 -0.3267 42 1 3.0456 7.2904 -1.2430 43 1 1.5218 6.3733 -1.3084 44 1 2.8882 3.5475 -3.3110 45 1 1.4299 4.1871 -2.5160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339199547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:21 Heat of formation + Delta-G solvation = -74.611713 kcal Electronic energy + Delta-G solvation = -22353.069154 eV Core-core repulsion = 19368.963162 eV Total energy + Delta-G solvation = -2984.105992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93621 -38.06454 -35.13386 -33.10900 -32.58854 -30.98490 -29.79447 -27.09867 -27.00529 -25.98776 -23.85348 -23.04836 -21.72071 -20.87991 -18.13046 -17.96058 -16.50328 -16.20080 -15.59097 -14.74787 -14.52692 -14.33955 -14.01014 -13.84041 -13.56689 -13.05805 -12.92871 -12.60094 -12.35777 -12.07260 -11.95545 -11.77720 -11.60861 -11.52518 -11.42486 -11.07881 -11.01866 -10.96672 -10.82998 -10.60098 -10.47520 -10.43964 -10.17134 -9.99815 -9.77709 -9.60930 -9.49997 -8.77737 -8.50031 -7.66020 -6.18038 -4.24226 3.23145 3.28593 3.30718 3.50340 4.01531 4.33153 4.94500 5.00788 5.05410 5.14668 5.44174 5.54384 5.55617 5.69628 5.75588 5.79116 5.85957 5.86611 5.89597 5.93045 5.97106 6.00277 6.06217 6.12437 6.25036 6.29549 6.30424 6.37347 6.40415 6.47928 6.60391 6.61485 6.65926 6.68441 6.74352 6.83950 6.97236 7.04119 7.24557 7.60266 7.76753 8.06910 8.42375 8.80525 9.11492 9.42514 10.88426 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.008288 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.589430 B = 3377.613763 C = 4644.932429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.596 5.596 4 C 0.237 3.763 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.274 1.274 13 C 0.519 3.481 14 O -0.579 6.579 15 C -0.099 4.099 16 H 0.100 0.900 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.106 4.106 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.087 4.087 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 3.995 -8.020 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.326 5.326 4 C 0.117 3.883 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.199 1.199 13 C 0.308 3.692 14 O -0.461 6.461 15 C -0.120 4.120 16 H 0.118 0.882 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.065 4.065 21 C -0.196 4.196 22 C -0.204 4.204 23 C -0.125 4.125 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.510 3.812 -8.351 9.194 hybrid contribution 0.907 -0.157 0.673 1.140 sum 0.397 3.656 -7.678 8.513 Atomic orbital electron populations 1.22098 0.97027 1.01065 1.01857 1.21206 0.93382 0.84116 1.02178 1.48274 1.62945 1.13370 1.08018 1.19441 0.97005 0.92530 0.79300 1.21411 0.98753 1.30589 1.06356 0.92070 1.24906 0.97467 0.94825 0.96396 1.69911 1.35635 1.31618 1.15662 0.86655 0.84594 0.78551 0.78313 1.21191 1.20208 1.19941 1.20598 0.77400 0.88055 0.83186 1.90559 1.55688 1.68094 1.31736 1.21262 0.97377 0.93539 0.99822 0.88199 1.21525 0.92404 0.97173 1.03639 1.21531 0.99756 0.96381 0.97725 1.21603 0.94674 0.99789 0.98323 1.20541 0.95468 0.95237 0.95206 1.21841 1.01030 0.99674 0.97011 1.21999 1.00448 0.99419 0.98542 1.21426 0.99769 0.93934 0.97411 0.92612 0.92654 0.92879 0.91314 0.90675 0.94879 0.94248 0.92512 0.88576 0.92966 0.92400 0.91224 0.92378 0.92590 0.92904 0.93029 0.92913 0.91208 0.93193 0.93051 0.91421 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 37.15 0.38 -2.30 16 2 C 0.11 2.18 6.13 -4.05 -0.02 2.16 16 3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16 4 C 0.24 5.55 4.98 -5.19 -0.03 5.52 16 5 C -0.53 -13.33 7.57 -34.44 -0.26 -13.59 16 6 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -23.90 13.29 55.43 0.74 -23.16 16 9 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.52 11.04 6.75 -10.99 -0.07 10.97 16 14 O -0.58 -13.36 15.71 5.55 0.09 -13.28 16 15 C -0.10 -1.85 1.66 -91.77 -0.15 -2.01 16 16 H 0.10 1.97 4.19 -51.93 -0.22 1.75 16 17 C -0.11 -2.00 5.19 -26.73 -0.14 -2.14 16 18 C -0.12 -1.82 5.65 -26.73 -0.15 -1.97 16 19 C -0.11 -1.44 4.73 -26.73 -0.13 -1.57 16 20 C -0.06 -0.89 0.77 -154.48 -0.12 -1.01 16 21 C -0.14 -1.63 8.47 37.16 0.31 -1.31 16 22 C -0.15 -2.03 7.78 37.16 0.29 -1.74 16 23 C -0.09 -1.43 3.57 -26.71 -0.10 -1.53 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 28 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.04 0.96 5.83 -51.93 -0.30 0.65 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.10 2.01 5.71 -51.93 -0.30 1.71 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.09 4.81 -51.93 -0.25 0.84 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -27.19 341.24 -7.82 -35.00 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.05 Total: 3.25 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.28 Total: -8.90 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.31 Total: -36.31 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.19 -7.82 -35.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339199547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.607 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds