Wall clock time and date at job start Mon Mar 30 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47196 * 2 1 4 4 C 1.46504 * 119.99778 * 93.96726 * 3 2 1 5 5 C 1.50709 * 109.46475 * 94.11231 * 4 3 2 6 6 H 1.07997 * 120.00445 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99704 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00098 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47211 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47028 * 300.00629 * 9 7 5 12 12 H 1.48495 * 109.47219 * 60.00187 * 9 7 5 13 13 C 1.34771 * 120.00302 * 273.97634 * 3 2 1 14 14 O 1.21282 * 119.99630 * 4.79460 * 13 3 2 15 15 C 1.50694 * 120.00400 * 184.79581 * 13 3 2 16 16 H 1.09008 * 109.46848 * 42.74508 * 15 13 3 17 17 C 1.53001 * 109.47464 * 162.74541 * 15 13 3 18 18 C 1.52996 * 109.46941 * 59.99914 * 17 15 13 19 19 H 1.08998 * 109.47318 * 299.99859 * 18 17 15 20 20 C 1.53001 * 109.46941 * 180.02562 * 18 17 15 21 21 C 1.52995 * 109.47173 * 60.00511 * 18 17 15 22 22 C 1.53009 * 109.47189 * 299.99771 * 21 18 17 23 23 H 1.08998 * 109.46645 * 300.00250 * 22 21 18 24 24 C 1.52995 * 109.47189 * 180.02562 * 22 21 18 25 25 C 1.52999 * 109.47215 * 282.74759 * 15 13 3 26 26 H 1.09002 * 109.46871 * 59.99943 * 1 2 3 27 27 H 1.09005 * 109.46718 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46871 * 299.99795 * 1 2 3 29 29 H 1.08996 * 109.47365 * 240.00396 * 2 1 3 30 30 H 1.09004 * 109.47335 * 119.99812 * 2 1 3 31 31 H 1.08994 * 109.47242 * 334.11490 * 4 3 2 32 32 H 1.08998 * 109.47349 * 214.10999 * 4 3 2 33 33 H 0.97005 * 119.99582 * 359.97438 * 8 7 5 34 34 H 1.08999 * 109.47540 * 180.02562 * 17 15 13 35 35 H 1.09005 * 109.46883 * 300.00017 * 17 15 13 36 36 H 1.09002 * 109.46781 * 60.00628 * 20 18 17 37 37 H 1.09004 * 109.47078 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.47525 * 300.00043 * 20 18 17 39 39 H 1.08998 * 109.47532 * 59.99478 * 21 18 17 40 40 H 1.08996 * 109.47599 * 179.97438 * 21 18 17 41 41 H 1.08996 * 109.47599 * 59.99924 * 24 22 21 42 42 H 1.09000 * 109.46883 * 179.97438 * 24 22 21 43 43 H 1.08998 * 109.47532 * 299.99707 * 24 22 21 44 44 H 1.08997 * 109.47094 * 59.99939 * 25 15 13 45 45 H 1.09006 * 109.46924 * 179.97438 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3453 2.0425 1.2657 5 6 3.8165 1.8823 1.5508 6 1 4.4451 1.3423 0.8582 7 6 4.3602 2.4260 2.6952 8 7 3.5948 3.0840 3.5384 9 14 6.1838 2.2281 3.0482 10 1 6.5152 2.8982 4.3313 11 1 6.5154 0.7837 3.1445 12 1 6.9703 2.8443 1.9497 13 6 2.1667 2.0436 -1.1643 14 8 1.8145 1.5283 -2.2042 15 6 2.7702 3.4244 -1.1742 16 1 3.6294 3.4502 -0.5038 17 6 3.2205 3.7741 -2.5940 18 6 2.0147 3.7378 -3.5349 19 1 1.5782 2.7391 -3.5279 20 6 2.4651 4.0869 -4.9548 21 6 0.9712 4.7538 -3.0661 22 6 0.5209 4.4042 -1.6462 23 1 0.0844 3.4055 -1.6392 24 6 -0.5230 5.4198 -1.1777 25 6 1.7268 4.4404 -0.7053 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7677 1.5902 2.0718 32 1 2.1023 3.1027 1.1952 33 1 2.6479 3.1871 3.3549 34 1 3.6574 4.7727 -2.6010 35 1 3.9640 3.0503 -2.9280 36 1 3.2083 3.3627 -5.2886 37 1 1.6061 4.0606 -5.6253 38 1 2.9019 5.0855 -4.9623 39 1 1.4077 5.7526 -3.0732 40 1 0.1123 4.7284 -3.7367 41 1 -1.3820 5.3936 -1.8481 42 1 -0.8442 5.1704 -0.1664 43 1 -0.0870 6.4187 -1.1848 44 1 1.4060 4.1913 0.3062 45 1 2.1635 5.4391 -0.7120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356808316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:39 Heat of formation + Delta-G solvation = -85.496224 kcal Electronic energy + Delta-G solvation = -22487.857573 eV Core-core repulsion = 19503.279594 eV Total energy + Delta-G solvation = -2984.577980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73387 -38.87974 -37.03959 -34.96740 -34.29571 -33.36112 -31.46696 -28.46248 -27.46774 -27.22555 -25.34573 -24.95148 -22.88440 -21.46857 -21.22255 -19.91561 -18.79218 -17.67626 -17.10714 -16.24639 -16.11664 -15.72433 -15.60840 -15.12978 -14.93575 -14.65904 -14.43943 -14.17346 -13.83952 -13.48725 -13.45525 -13.32432 -13.07476 -13.04119 -12.96278 -12.71650 -12.65312 -12.59041 -12.29489 -11.99882 -11.96909 -11.87051 -11.60367 -11.51989 -11.19544 -10.91421 -10.87377 -10.55166 -10.04012 -9.43913 -8.62803 -6.40953 1.54489 1.59414 1.77752 1.80048 2.30293 2.55282 3.13038 3.58940 3.76065 3.79961 3.96018 4.11343 4.20737 4.26732 4.30841 4.41702 4.44521 4.47614 4.58365 4.63320 4.68763 4.81165 4.81808 4.84430 4.84690 4.90182 4.94394 4.97037 5.01392 5.04003 5.08324 5.15567 5.20246 5.28346 5.33360 5.43284 5.47946 5.53829 5.71235 5.81836 5.86003 6.14334 6.49896 6.69105 7.32085 7.43130 8.71462 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.006819 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.447808 B = 4105.210266 C = 4445.697896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 N -0.600 5.600 4 C 0.233 3.767 5 C -0.619 4.619 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.926 5.926 9 Si 1.107 2.893 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.272 1.272 13 C 0.524 3.476 14 O -0.576 6.576 15 C -0.108 4.108 16 H 0.082 0.918 17 C -0.085 4.085 18 C -0.117 4.117 19 H 0.088 0.912 20 C -0.136 4.136 21 C -0.095 4.095 22 C -0.090 4.090 23 H 0.041 0.959 24 C -0.140 4.140 25 C -0.099 4.099 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 3.158 -10.450 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 N -0.330 5.330 4 C 0.112 3.888 5 C -0.657 4.657 6 H 0.059 0.941 7 C -0.217 4.217 8 N -0.563 5.563 9 Si 0.930 3.070 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.198 1.198 13 C 0.315 3.685 14 O -0.458 6.458 15 C -0.129 4.129 16 H 0.100 0.900 17 C -0.123 4.123 18 C -0.135 4.135 19 H 0.106 0.894 20 C -0.193 4.193 21 C -0.132 4.132 22 C -0.109 4.109 23 H 0.060 0.940 24 C -0.197 4.197 25 C -0.136 4.136 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.965 3.243 -9.868 11.118 hybrid contribution -1.096 -0.749 -0.526 1.428 sum -5.061 2.494 -10.393 11.826 Atomic orbital electron populations 1.21984 0.94732 1.02930 1.01123 1.21381 0.95221 0.82822 1.01884 1.48156 1.63558 1.13947 1.07345 1.19378 0.95165 0.93358 0.80911 1.22499 0.94759 1.38956 1.09526 0.94055 1.26995 1.09785 0.92568 0.92367 1.70937 1.07274 1.40028 1.38031 0.83031 0.70276 0.77115 0.76616 1.20672 1.20139 1.19762 1.20785 0.77129 0.88222 0.82403 1.90408 1.53206 1.70337 1.31897 1.21310 0.99739 0.91880 0.99976 0.89962 1.21361 0.97897 1.01139 0.91913 1.21584 0.95530 1.01781 0.94592 0.89388 1.21734 1.00966 1.01237 0.95376 1.21540 0.98321 0.98828 0.94539 1.21105 0.95170 0.98841 0.95769 0.94037 1.21768 0.98277 0.98892 1.00742 1.21590 0.95075 0.98493 0.98455 0.93622 0.89489 0.93216 0.91640 0.90976 0.97253 0.94460 0.93054 0.90322 0.93552 0.93577 0.92237 0.92056 0.91084 0.91525 0.91615 0.93532 0.91454 0.92933 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 10.21 71.98 0.74 -4.02 16 2 C 0.11 4.16 6.03 86.38 0.52 4.68 16 3 N -0.60 -25.89 2.47 -826.14 -2.04 -27.93 16 4 C 0.23 11.17 4.13 85.64 0.35 11.53 16 5 C -0.62 -32.69 8.31 25.60 0.21 -32.48 16 6 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 7 C -0.02 -0.91 5.46 84.65 0.46 -0.45 16 8 N -0.93 -52.52 13.65 21.45 0.29 -52.23 16 9 Si 1.11 47.86 29.90 68.60 2.05 49.92 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 13 C 0.52 22.01 5.55 87.66 0.49 22.49 16 14 O -0.58 -25.04 12.75 -3.04 -0.04 -25.08 16 15 C -0.11 -4.09 2.21 -11.54 -0.03 -4.12 16 16 H 0.08 3.57 6.72 -2.38 -0.02 3.55 16 17 C -0.09 -2.77 4.53 30.59 0.14 -2.63 16 18 C -0.12 -3.47 2.43 -10.80 -0.03 -3.49 16 19 H 0.09 3.21 4.98 -2.54 -0.01 3.20 16 20 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 21 C -0.09 -2.47 4.49 30.60 0.14 -2.34 16 22 C -0.09 -2.67 2.50 -10.79 -0.03 -2.69 16 23 H 0.04 1.45 7.10 -2.39 -0.02 1.43 16 24 C -0.14 -3.37 9.19 71.98 0.66 -2.71 16 25 C -0.10 -3.32 4.48 30.59 0.14 -3.18 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 2.22 8.14 -2.38 -0.02 2.21 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.49 7.62 -2.39 -0.02 2.47 16 30 H 0.07 2.72 8.04 -2.39 -0.02 2.70 16 31 H 0.01 0.47 7.91 -2.39 -0.02 0.46 16 32 H 0.04 1.81 4.38 -2.39 -0.01 1.80 16 33 H 0.26 14.70 7.22 -92.70 -0.67 14.03 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.98 5.57 -2.39 -0.01 1.97 16 45 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -59.37 340.14 5.72 -53.65 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 1.03 Total: 23.68 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.43 Total: -22.00 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.75 Total: -80.16 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.04 Total: -25.08 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.05 Total: 49.92 kcal Total: -59.37 5.72 -53.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356808316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.849 kcal (2) G-P(sol) polarization free energy of solvation -59.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds