Wall clock time and date at job start Mon Mar 30 2020 01:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53031 * 109.46224 * 2 1 4 4 C 1.53194 * 109.31450 * 178.62913 * 3 2 1 5 5 N 1.46923 * 108.77405 * 54.63291 * 4 3 2 6 6 C 1.37484 * 120.63086 * 126.37614 * 5 4 3 7 7 N 1.30347 * 120.00211 * 185.70295 * 6 5 4 8 8 N 1.37485 * 120.00120 * 5.69971 * 6 5 4 9 9 C 1.46499 * 120.00226 * 175.03112 * 8 6 5 10 10 C 1.52994 * 109.47158 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47371 * 300.00227 * 10 9 8 12 12 C 1.53003 * 109.47267 * 59.99732 * 10 9 8 13 13 C 1.50701 * 109.47151 * 179.97438 * 10 9 8 14 14 H 1.07998 * 119.99851 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99778 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00328 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99633 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47235 * 60.00017 * 17 15 13 19 19 H 1.48500 * 109.47141 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47182 * 299.99940 * 17 15 13 21 21 C 1.46932 * 118.73995 * 306.64528 * 5 4 3 22 22 C 1.52754 * 109.00622 * 53.31016 * 21 5 4 23 23 H 1.09002 * 109.46564 * 59.99615 * 1 2 3 24 24 H 1.08993 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46568 * 300.00403 * 1 2 3 26 26 H 1.09002 * 109.45586 * 119.97739 * 2 1 3 27 27 H 1.08997 * 109.50084 * 58.67974 * 3 2 1 28 28 H 1.08999 * 109.49921 * 298.57797 * 3 2 1 29 29 H 1.09007 * 109.58515 * 294.84898 * 4 3 2 30 30 H 1.09000 * 109.70858 * 174.49382 * 4 3 2 31 31 H 0.96996 * 119.99519 * 5.24639 * 7 6 5 32 32 H 0.97002 * 119.99550 * 355.02977 * 8 6 5 33 33 H 1.08998 * 109.46933 * 59.99887 * 9 8 6 34 34 H 1.09002 * 109.46984 * 300.00068 * 9 8 6 35 35 H 1.09000 * 109.47263 * 59.99607 * 11 10 9 36 36 H 1.08997 * 109.47232 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46552 * 299.99779 * 11 10 9 38 38 H 1.09002 * 109.46763 * 59.99901 * 12 10 9 39 39 H 1.08997 * 109.47256 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47062 * 300.00206 * 12 10 9 41 41 H 0.96995 * 120.00223 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.58619 * 173.14743 * 21 5 4 43 43 H 1.08999 * 109.58195 * 293.56719 * 21 5 4 44 44 H 1.09003 * 109.56447 * 185.55412 * 22 21 5 45 45 H 1.09001 * 109.36198 * 65.50177 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5715 1.4391 0.0346 5 7 4.0676 0.6237 -1.0824 6 6 4.9790 1.1378 -1.9742 7 7 5.3270 0.4455 -3.0224 8 7 5.5233 2.3821 -1.7605 9 6 6.5738 2.8846 -2.6494 10 6 7.0012 4.2816 -2.1950 11 6 5.7973 5.2245 -2.2440 12 6 7.5355 4.2109 -0.7630 13 6 8.0822 4.7983 -3.1090 14 1 8.4293 4.1912 -3.9320 15 6 8.6274 6.0466 -2.8951 16 7 8.2044 6.7861 -1.8933 17 14 9.9668 6.6874 -4.0286 18 1 9.4485 6.7556 -5.4185 19 1 10.3819 8.0432 -3.5874 20 1 11.1356 5.7724 -3.9805 21 6 3.5668 -0.7495 -1.2318 22 6 2.0396 -0.7230 -1.2490 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8931 -0.5135 0.8903 27 1 1.6576 1.9639 0.8777 28 1 1.6977 1.9497 -0.9023 29 1 3.9146 1.0140 0.9779 30 1 3.9439 2.4587 -0.0636 31 1 4.8879 -0.3978 -3.2142 32 1 5.2117 2.9272 -1.0211 33 1 6.1929 2.9354 -3.6694 34 1 7.4313 2.2126 -2.6148 35 1 5.0157 4.8506 -1.5826 36 1 6.1020 6.2199 -1.9206 37 1 5.4167 5.2749 -3.2641 38 1 8.3932 3.5391 -0.7280 39 1 7.8404 5.2060 -0.4394 40 1 6.7539 3.8369 -0.1016 41 1 8.5881 7.6641 -1.7426 42 1 3.9341 -1.1728 -2.1667 43 1 3.9096 -1.3566 -0.3939 44 1 1.6569 -1.7435 -1.2602 45 1 1.6973 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414359957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:52 Heat of formation + Delta-G solvation = 22.672403 kcal Electronic energy + Delta-G solvation = -21399.345699 eV Core-core repulsion = 18451.751014 eV Total energy + Delta-G solvation = -2947.594685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59565 -37.27071 -35.57325 -33.05286 -32.02637 -31.16757 -29.79014 -27.85626 -25.63382 -25.45500 -24.71557 -23.13748 -22.97305 -20.47748 -19.23959 -18.78290 -17.52203 -15.90835 -15.46884 -14.87404 -14.82752 -14.71360 -14.49536 -14.00712 -13.75564 -13.45542 -13.38212 -12.82582 -12.51642 -12.27773 -12.07945 -11.97513 -11.72855 -11.38948 -11.21646 -11.09630 -10.96239 -10.66061 -10.64764 -10.58591 -10.52525 -10.19259 -10.10964 -9.48833 -9.17733 -8.80630 -8.64721 -8.32093 -7.97231 -7.35524 -5.94337 -4.03662 3.07272 3.35376 3.39071 3.43409 3.58306 4.22215 4.46968 4.53539 4.58131 4.65266 4.97114 5.16467 5.18881 5.30383 5.32164 5.41122 5.43626 5.57885 5.59573 5.69726 5.81579 5.84110 5.92409 5.95700 6.21397 6.23452 6.42587 6.55981 6.63354 6.83333 6.91618 7.00537 7.06010 7.16463 7.34142 7.46619 7.65313 7.77540 7.98387 8.10696 8.24228 8.42919 8.49915 8.96910 9.40981 9.61514 11.07043 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.003993 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.744133 B = 7010.209927 C = 7393.701418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.660 5.660 6 C 0.638 3.362 7 N -0.835 5.835 8 N -0.717 5.717 9 C 0.164 3.836 10 C 0.054 3.946 11 C -0.127 4.127 12 C -0.128 4.128 13 C -0.502 4.502 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.128 3.872 22 C -0.130 4.130 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.325 0.675 32 H 0.396 0.604 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.003 0.997 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.083 0.917 40 H 0.003 0.997 41 H 0.259 0.741 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 -11.618 6.379 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.169 4.169 4 C -0.007 4.007 5 N -0.389 5.389 6 C 0.273 3.727 7 N -0.486 5.486 8 N -0.361 5.361 9 C 0.041 3.959 10 C 0.053 3.947 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.541 4.541 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.004 3.996 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.234 0.766 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.102 0.898 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.840 -11.249 5.671 17.988 hybrid contribution -0.202 0.011 0.226 0.303 sum -13.042 -11.237 5.897 18.197 Atomic orbital electron populations 1.21827 0.95186 1.01536 1.01813 1.21079 0.95488 0.96097 0.98186 1.21995 0.95691 0.96599 1.02573 1.21450 0.93613 0.95834 0.89849 1.47665 1.47435 1.13726 1.30048 1.19106 0.82270 0.86725 0.84558 1.69933 1.39896 1.17460 1.21288 1.44562 1.42939 1.13417 1.35204 1.21435 0.87044 0.95669 0.91750 1.18387 0.93792 0.88738 0.93806 1.21795 0.95590 1.03382 0.97748 1.21800 0.97245 1.02626 0.96873 1.20974 1.19234 1.01179 1.12706 0.92462 1.24878 0.96711 0.96664 0.95306 1.69799 1.42574 1.10969 1.29313 0.86647 0.82301 0.77801 0.81169 1.20305 1.21435 1.20322 1.21237 0.93389 0.82985 1.02015 1.21929 0.95633 1.00696 0.98569 0.92713 0.92796 0.92689 0.91223 0.91050 0.91477 0.92282 0.90508 0.85700 0.76576 0.93123 0.93411 0.97810 0.89819 0.95519 0.95546 0.89811 0.97796 0.93083 0.90223 0.92278 0.91086 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.76 2.68 -90.58 -0.24 -1.01 16 3 C -0.13 -1.26 5.36 -26.62 -0.14 -1.40 16 4 C 0.12 1.37 6.42 -3.71 -0.02 1.35 16 5 N -0.66 -9.03 3.05 -174.77 -0.53 -9.56 16 6 C 0.64 11.30 8.42 -320.08 -2.70 8.60 16 7 N -0.84 -15.91 13.21 30.15 0.40 -15.52 16 8 N -0.72 -13.54 4.97 -61.79 -0.31 -13.85 16 9 C 0.16 3.65 4.50 -4.04 -0.02 3.63 16 10 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 11 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 12 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 13 C -0.50 -13.49 8.01 -34.44 -0.28 -13.76 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 16 N -0.89 -24.07 9.35 55.43 0.52 -23.55 16 17 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.13 1.41 6.42 -3.93 -0.03 1.39 16 22 C -0.13 -1.18 5.34 -26.84 -0.14 -1.32 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.08 0.96 5.72 -51.93 -0.30 0.66 16 31 H 0.33 5.44 6.30 -40.82 -0.26 5.18 16 32 H 0.40 7.00 3.79 -40.82 -0.15 6.84 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 36 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 40 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 41 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 42 H 0.08 0.91 5.65 -51.93 -0.29 0.61 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -28.17 336.97 -10.47 -38.64 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.81 Total: 8.43 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.80 Total: -5.75 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.08 Total: -62.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.17 -10.47 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414359957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.310 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds